Experiment set2IT061 for Bifidobacterium breve UCC2003
CDM1 without Serine
Group: nutrient dropoutMedia: CDM1 + no Serine, pH=7
Culturing: Bifido_ML2, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 37 (C), shaken=0 rpm
By: Anthony Shiver on 12/10/2019
Growth plate: CDM1_nutrientdrop F1
Specific Phenotypes
For 2 genes in this experiment
For nutrient dropout no Serine in Bifidobacterium breve UCC2003
For nutrient dropout no Serine across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Ammonia assimilation | 1 |
| Branched-Chain Amino Acid Biosynthesis | 1 |
| Leucine Biosynthesis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Valine, leucine and isoleucine biosynthesis
- C5-Branched dibasic acid metabolism
- Biosynthesis of alkaloids derived from histidine and purine
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-leucine biosynthesis | 6 | 6 | 2 |
| 3-methylbutanol biosynthesis (engineered) | 7 | 6 | 2 |
| L-isoleucine biosynthesis II | 8 | 6 | 1 |
| superpathway of branched chain amino acid biosynthesis | 17 | 17 | 2 |
| 2,5-xylenol and 3,5-xylenol degradation | 13 | 1 | 1 |