Experiment set2IT061 for Burkholderia phytofirmans PsJN

Compare to:

LB, pH6

200 most important genes:

  gene name fitness t score description  
BPHYT_RS23840 -4.0 -4.6 methyltransferase compare
BPHYT_RS02610 -3.1 -7.4 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS16710 -3.1 -2.5 LysR family transcriptional regulator compare
BPHYT_RS14855 -2.9 -3.5 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS16255 -2.8 -7.9 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS16270 -2.4 -5.8 phosphoglycerate kinase compare
BPHYT_RS15415 -2.1 -15.3 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS14865 -2.0 -4.4 UDP-glucose 6-dehydrogenase compare
BPHYT_RS16835 -2.0 -6.7 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS12465 -1.9 -4.2 inositol monophosphatase compare
BPHYT_RS05320 -1.9 -2.6 beta-lactamase compare
BPHYT_RS17530 -1.9 -8.3 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS08960 -1.9 -2.5 threonine synthase compare
BPHYT_RS01625 -1.8 -3.5 chemotaxis protein CheY compare
BPHYT_RS36275 -1.8 -2.4 hypothetical protein compare
BPHYT_RS16245 -1.8 -7.1 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS17520 -1.8 -5.7 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS06610 -1.7 -2.9 triosephosphate isomerase compare
BPHYT_RS09515 -1.7 -3.6 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS08765 -1.7 -1.5 ABC transporter ATP-binding protein compare
BPHYT_RS16675 -1.6 -2.8 dihydroorotase compare
BPHYT_RS17920 -1.5 -2.0 protein CyaY compare
BPHYT_RS17240 -1.5 -1.6 cell division protein FtsW compare
BPHYT_RS02590 -1.5 -9.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS32260 -1.5 -2.2 hypothetical protein compare
BPHYT_RS02865 -1.4 -2.9 hypothetical protein compare
BPHYT_RS33580 -1.4 -5.5 geranyltranstransferase compare
BPHYT_RS17095 -1.4 -2.4 proline--tRNA ligase compare
BPHYT_RS33920 -1.4 -7.6 type II citrate synthase compare
BPHYT_RS08850 -1.4 -1.8 transcriptional regulator compare
BPHYT_RS23270 -1.4 -1.9 enoyl-CoA hydratase compare
BPHYT_RS04965 -1.4 -7.0 ATP-binding protein compare
BPHYT_RS02860 -1.4 -1.5 membrane protein compare
BPHYT_RS12845 -1.3 -10.3 ATPase compare
BPHYT_RS04335 -1.3 -1.6 membrane protein compare
BPHYT_RS12990 -1.3 -3.4 iron transporter compare
BPHYT_RS19435 -1.3 -3.4 16S rRNA methyltransferase compare
BPHYT_RS15615 -1.3 -2.9 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS14550 -1.3 -1.4 tRNA-Asn compare
BPHYT_RS16840 -1.3 -3.2 transketolase compare
BPHYT_RS10540 -1.3 -1.7 secretion protein compare
BPHYT_RS08565 -1.3 -2.1 dihydroorotate dehydrogenase compare
BPHYT_RS30795 -1.2 -1.9 short-chain dehydrogenase compare
BPHYT_RS03645 -1.2 -1.6 tRNA dimethylallyltransferase compare
BPHYT_RS03400 -1.2 -1.5 ATP-dependent DNA helicase RecG compare
BPHYT_RS15620 -1.2 -3.1 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS29110 -1.2 -2.6 DNA-directed DNA polymerase compare
BPHYT_RS32880 -1.2 -1.7 alanine acetyltransferase compare
BPHYT_RS04290 -1.2 -1.8 glycosyl transferase family 2 compare
BPHYT_RS06405 -1.2 -6.0 phosphoribosylamine--glycine ligase compare
BPHYT_RS09585 -1.2 -2.3 hypothetical protein compare
BPHYT_RS16175 -1.2 -2.3 hemolysin D compare
BPHYT_RS18590 -1.2 -1.1 hypothetical protein compare
BPHYT_RS14450 -1.1 -4.4 hypothetical protein compare
BPHYT_RS02285 -1.1 -4.7 cell division protein compare
BPHYT_RS06600 -1.1 -2.0 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS04370 -1.1 -1.9 glycosyl transferase compare
BPHYT_RS06175 -1.1 -4.7 LPS biosynthesis compare
BPHYT_RS03015 -1.1 -1.0 aldolase compare
BPHYT_RS06375 -1.1 -3.7 ribonuclease compare
BPHYT_RS14845 -1.0 -2.6 cysteine synthase compare
BPHYT_RS12840 -1.0 -4.1 pyruvate dehydrogenase compare
BPHYT_RS12785 -1.0 -3.1 Rrf2 family transcriptional regulator compare
BPHYT_RS15545 -1.0 -2.4 isoaspartyl peptidase compare
BPHYT_RS12060 -1.0 -2.2 hypothetical protein compare
BPHYT_RS06975 -1.0 -2.2 glutamate racemase compare
BPHYT_RS10005 -1.0 -1.6 hypothetical protein compare
BPHYT_RS34805 -1.0 -4.7 ABC transporter compare
BPHYT_RS02760 -1.0 -2.8 cytochrome BD oxidase subunit II compare
BPHYT_RS14755 -1.0 -2.7 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS19305 -1.0 -5.0 ATP-dependent DNA helicase Rep compare
BPHYT_RS33765 -1.0 -1.2 membrane protein compare
BPHYT_RS33060 -1.0 -1.4 hypothetical protein compare
BPHYT_RS34320 -1.0 -2.6 DNA-binding protein compare
BPHYT_RS06900 -0.9 -3.8 aspartate aminotransferase compare
BPHYT_RS22870 -0.9 -1.6 copper transporter compare
BPHYT_RS10135 -0.9 -1.2 hypothetical protein compare
BPHYT_RS17445 -0.9 -3.7 GTP-binding protein YchF compare
BPHYT_RS16880 -0.9 -1.7 malic enzyme compare
BPHYT_RS02005 -0.9 -1.4 diguanylate phosphodiesterase compare
BPHYT_RS11310 -0.9 -1.4 LysR family transcriptional regulator compare
BPHYT_RS09765 -0.9 -2.1 G-D-S-L family lipolytic protein compare
BPHYT_RS09315 -0.9 -1.0 chemotaxis protein CheY compare
BPHYT_RS29545 -0.9 -1.4 osmotically inducible protein C compare
BPHYT_RS01455 -0.9 -0.8 peptide deformylase compare
BPHYT_RS19920 -0.9 -1.2 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS21385 -0.9 -1.9 short-chain dehydrogenase compare
BPHYT_RS16340 -0.9 -4.0 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS16290 -0.9 -1.1 hypothetical protein compare
BPHYT_RS15890 -0.9 -1.2 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
BPHYT_RS14400 -0.9 -2.8 anti-sigma factor compare
BPHYT_RS03640 -0.8 -2.3 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS21350 -0.8 -2.3 ADP-glucose pyrophosphorylase compare
BPHYT_RS21595 -0.8 -1.5 TetR family transcriptional regulator compare
BPHYT_RS14380 -0.8 -3.6 elongation factor 4 compare
BPHYT_RS07705 -0.8 -2.0 arginine succinyltransferase compare
BPHYT_RS29320 -0.8 -2.0 histidine kinase compare
BPHYT_RS19335 -0.8 -3.3 hypothetical protein compare
BPHYT_RS12925 -0.8 -1.0 exodeoxyribonuclease III compare
BPHYT_RS20220 -0.8 -1.3 antibiotic synthesis protein MbtH compare
BPHYT_RS13975 -0.8 -3.3 LysR family transcriptional regulator compare
BPHYT_RS24550 -0.8 -1.8 hypothetical protein compare
BPHYT_RS09650 -0.8 -1.3 hypothetical protein compare
BPHYT_RS15075 -0.8 -1.9 dihydrokaempferol 4-reductase compare
BPHYT_RS13885 -0.8 -1.6 myo-inositol 2-dehydrogenase compare
BPHYT_RS10765 -0.8 -2.0 amidase compare
BPHYT_RS13565 -0.8 -1.3 bacterioferritin compare
BPHYT_RS29750 -0.8 -4.1 phosphoenolpyruvate phosphomutase compare
BPHYT_RS00790 -0.8 -2.1 conjugal transfer protein TraF compare
BPHYT_RS01620 -0.8 -4.6 sensor histidine kinase compare
BPHYT_RS24315 -0.8 -1.7 phosphoribosyltransferase compare
BPHYT_RS08060 -0.8 -3.4 ribosome maturation factor RimP compare
BPHYT_RS12725 -0.8 -5.9 regulator compare
BPHYT_RS22295 -0.8 -1.1 LysR family transcriptional regulator compare
BPHYT_RS33645 -0.7 -2.7 homoserine kinase compare
BPHYT_RS26855 -0.7 -2.4 carboxyvinyl-carboxyphosphonate phosphorylmutase compare
BPHYT_RS20095 -0.7 -0.9 transcriptional regulator compare
BPHYT_RS12510 -0.7 -1.6 RNA-binding protein compare
BPHYT_RS29805 -0.7 -2.6 lysine transporter LysE compare
BPHYT_RS34780 -0.7 -2.5 phytoene synthase compare
BPHYT_RS36220 -0.7 -1.0 hypothetical protein compare
BPHYT_RS05730 -0.7 -2.5 hypothetical protein compare
BPHYT_RS02300 -0.7 -1.2 acid shock protein compare
BPHYT_RS09330 -0.7 -5.2 phytoene synthase compare
BPHYT_RS25970 -0.7 -0.9 urea amidolyase compare
BPHYT_RS14195 -0.7 -2.2 carbamoyl phosphate synthase small subunit compare
BPHYT_RS03725 -0.7 -1.0 serine hydroxymethyltransferase compare
BPHYT_RS01485 -0.7 -0.7 histidine kinase compare
BPHYT_RS23910 -0.7 -1.6 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS13645 -0.7 -6.2 threonine--tRNA ligase compare
BPHYT_RS23540 -0.7 -1.5 RND transporter compare
BPHYT_RS06685 -0.7 -1.6 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS26005 -0.7 -1.7 MarR family transcriptional regulator compare
BPHYT_RS14185 -0.7 -1.8 transcription elongation factor GreA compare
BPHYT_RS02070 -0.7 -1.8 hypothetical protein compare
BPHYT_RS28860 -0.7 -0.9 haloacid dehalogenase compare
BPHYT_RS18630 -0.7 -2.7 allophanate hydrolase compare
BPHYT_RS17035 -0.7 -2.0 sugar kinase compare
BPHYT_RS29920 -0.7 -0.9 hypothetical protein compare
BPHYT_RS06075 -0.7 -3.6 hypothetical protein compare
BPHYT_RS30825 -0.7 -1.0 extradiol dioxygenase compare
BPHYT_RS18320 -0.7 -4.5 orotate phosphoribosyltransferase compare
BPHYT_RS12055 -0.7 -5.7 phosphoenolpyruvate synthase compare
BPHYT_RS11535 -0.7 -1.7 membrane protein compare
BPHYT_RS04385 -0.7 -2.5 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS21700 -0.7 -1.6 phosphotransacetylase compare
BPHYT_RS35750 -0.7 -1.1 hypothetical protein compare
BPHYT_RS09260 -0.7 -3.1 histidine kinase compare
BPHYT_RS05580 -0.7 -2.0 hypothetical protein compare
BPHYT_RS10260 -0.7 -1.1 hypothetical protein compare
BPHYT_RS13390 -0.6 -0.8 IclR family transcriptional regulator compare
BPHYT_RS30340 -0.6 -1.2 AraC family transcriptional regulator compare
BPHYT_RS22355 -0.6 -1.4 HAD family hydrolase compare
BPHYT_RS10240 -0.6 -0.7 translation initiation inhibitor compare
BPHYT_RS06400 -0.6 -1.9 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS26355 -0.6 -1.3 hypothetical protein compare
BPHYT_RS30900 -0.6 -2.3 transcriptional regulator compare
BPHYT_RS11020 -0.6 -1.9 transporter compare
BPHYT_RS21460 -0.6 -1.6 UDP-N-acetylglucosamine 2-epimerase compare
BPHYT_RS13200 -0.6 -1.2 molybdopterin binding oxidoreductase compare
BPHYT_RS31755 -0.6 -1.2 amino acid ABC transporter ATPase compare
BPHYT_RS13605 -0.6 -0.7 tRNA-Pro compare
BPHYT_RS28910 -0.6 -0.8 diguanylate phosphodiesterase compare
BPHYT_RS33610 -0.6 -1.0 DNA polymerase I compare
BPHYT_RS22710 -0.6 -2.2 XRE family transcriptional regulator compare
BPHYT_RS06190 -0.6 -2.1 heptosyltransferase compare
BPHYT_RS06985 -0.6 -2.9 fumarate hydratase compare
BPHYT_RS09160 -0.6 -2.1 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS34815 -0.6 -1.2 ABC transporter compare
BPHYT_RS03280 -0.6 -1.1 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS15290 -0.6 -1.6 tRNA-Arg compare
BPHYT_RS05010 -0.6 -2.6 RpiR family transcriptional regulator compare
BPHYT_RS11685 -0.6 -0.9 phasin family protein compare
BPHYT_RS33950 -0.6 -4.5 GntR family transcriptional regulator compare
BPHYT_RS04115 -0.6 -2.7 glycosyhydrolase compare
BPHYT_RS30130 -0.6 -1.1 AraC family transcriptional regulator compare
BPHYT_RS31770 -0.6 -1.7 TetR family transcriptional regulator compare
BPHYT_RS22940 -0.6 -0.9 pilus assembly protein TadE compare
BPHYT_RS12590 -0.6 -1.1 dual-specificity RNA methyltransferase RlmN compare
BPHYT_RS08125 -0.6 -4.5 ATPase compare
BPHYT_RS18705 -0.6 -1.2 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS24500 -0.6 -0.8 histidine kinase compare
BPHYT_RS26285 -0.6 -2.3 glycogen debranching protein compare
BPHYT_RS24585 -0.6 -0.7 NUDIX hydrolase compare
BPHYT_RS17075 -0.6 -2.3 ABC transporter permease compare
BPHYT_RS02130 -0.6 -2.4 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS14190 -0.6 -3.9 carbamoyl phosphate synthase large subunit compare
BPHYT_RS35885 -0.6 -3.0 hypothetical protein compare
BPHYT_RS28255 -0.6 -1.1 hypothetical protein compare
BPHYT_RS01425 -0.6 -2.4 3-phosphoglycerate dehydrogenase compare
BPHYT_RS11480 -0.6 -2.4 heme ABC transporter ATP-binding protein compare
BPHYT_RS06500 -0.6 -1.5 LOG family protein compare
BPHYT_RS03100 -0.6 -1.5 peptidase compare
BPHYT_RS17900 -0.6 -1.3 hypothetical protein compare
BPHYT_RS30845 -0.6 -1.4 polyketide cyclase compare
BPHYT_RS34560 -0.6 -2.4 hypothetical protein compare
BPHYT_RS06990 -0.6 -1.0 membrane protein compare
BPHYT_RS29865 -0.6 -1.0 sugar transferase compare
BPHYT_RS11920 -0.6 -1.9 membrane protein compare
BPHYT_RS05455 -0.6 -2.1 AraC family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in pH experiments