Experiment set2IT061 for Burkholderia phytofirmans PsJN

Compare to:

LB, pH6

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS28535 +1.3 2.0 response regulator receiver compare
BPHYT_RS25075 +1.3 2.6 AraC family transcriptional regulator compare
BPHYT_RS07425 +1.2 1.7 hypothetical protein compare
BPHYT_RS13320 +1.2 1.9 allantoate amidohydrolase compare
BPHYT_RS06335 +1.0 1.8 CopG family transcriptional regulator compare
BPHYT_RS10475 +1.0 2.1 mammalian cell entry protein compare
BPHYT_RS06105 +1.0 1.2 hypothetical protein compare
BPHYT_RS29605 +1.0 1.3 hypothetical protein compare
BPHYT_RS01985 +0.9 2.1 hypothetical protein compare
BPHYT_RS16065 +0.9 1.1 LacI family transcriptional regulator compare
BPHYT_RS01795 +0.9 6.0 histidine kinase compare
BPHYT_RS34505 +0.9 2.1 hypothetical protein compare
BPHYT_RS28690 +0.9 2.7 diguanylate phosphodiesterase compare
BPHYT_RS30610 +0.9 1.9 major facilitator transporter compare
BPHYT_RS18780 +0.9 5.0 flagellar motor switch protein FliG compare
BPHYT_RS32210 +0.9 0.6 hypothetical protein compare
BPHYT_RS22835 +0.8 1.5 flagellar motor protein MotA compare
BPHYT_RS00380 +0.8 2.5 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS20880 +0.8 1.2 polyketide cyclase compare
BPHYT_RS21725 +0.8 1.8 taurine ABC transporter substrate-binding protein compare
BPHYT_RS01790 +0.8 6.4 LuxR family transcriptional regulator compare
BPHYT_RS25875 +0.8 1.3 type III secretion protein compare
BPHYT_RS19985 +0.8 1.2 CoA-transferase compare
BPHYT_RS18835 +0.8 1.1 flagellar biosynthesis protein FliR compare
BPHYT_RS10670 +0.8 1.6 catechol 1,2-dioxygenase compare
BPHYT_RS29855 +0.8 1.1 protein-tyrosine-phosphatase compare
BPHYT_RS31675 +0.8 1.8 hypothetical protein compare
BPHYT_RS10400 +0.8 1.2 taurine ABC transporter permease compare
BPHYT_RS32365 +0.7 2.4 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS11825 +0.7 1.2 cytosine deaminase compare
BPHYT_RS20630 +0.7 1.3 patatin compare
BPHYT_RS18420 +0.7 1.7 hypothetical protein compare
BPHYT_RS19890 +0.7 1.4 hypothetical protein compare
BPHYT_RS08335 +0.7 1.1 hypothetical protein compare
BPHYT_RS03925 +0.7 2.4 LysR family transcriptional regulator compare
BPHYT_RS11930 +0.7 1.5 3-hydroxybutyrate dehydrogenase compare
BPHYT_RS33035 +0.7 1.1 murein transglycosylase compare
BPHYT_RS36150 +0.7 2.2 hypothetical protein compare
BPHYT_RS33870 +0.7 3.0 DNA methylase N-4 compare
BPHYT_RS04400 +0.7 1.0 Crp/Fnr family transcriptional regulator compare
BPHYT_RS02010 +0.7 1.1 copper homeostasis protein CutC compare
BPHYT_RS20115 +0.7 1.9 transcriptional regulator compare
BPHYT_RS34665 +0.7 1.5 hypothetical protein compare
BPHYT_RS08190 +0.6 1.1 type II secretion system protein compare
BPHYT_RS31440 +0.6 1.2 hypothetical protein compare
BPHYT_RS31205 +0.6 1.3 peptide ABC transporter ATP-binding protein compare
BPHYT_RS26910 +0.6 1.4 hypothetical protein compare
BPHYT_RS21235 +0.6 1.8 hypothetical protein compare
BPHYT_RS20430 +0.6 1.5 3-dehydroquinate dehydratase compare
BPHYT_RS33360 +0.6 1.4 formyl-CoA transferase compare
BPHYT_RS11970 +0.6 1.1 cupin compare
BPHYT_RS16195 +0.6 1.7 carbon monoxide dehydrogenase subunit G compare
BPHYT_RS22250 +0.6 1.2 D-amino acid dehydrogenase compare
BPHYT_RS18775 +0.6 4.7 flagellar M-ring protein FliF compare
BPHYT_RS22470 +0.6 1.1 hydrolase compare
BPHYT_RS27545 +0.6 1.4 histidine kinase compare
BPHYT_RS08595 +0.6 1.8 multidrug transporter compare
BPHYT_RS19025 +0.6 3.9 transcriptional regulator compare
BPHYT_RS25515 +0.6 1.9 glutathione S-transferase compare
BPHYT_RS33030 +0.6 1.0 hypothetical protein compare
BPHYT_RS36385 +0.6 0.8 TetR family transcriptional regulator compare
BPHYT_RS18860 +0.6 2.7 flagellar P-ring protein FlgI compare
BPHYT_RS18940 +0.6 4.4 flagellar biosynthesis protein FlhA compare
BPHYT_RS05385 +0.6 2.1 short-chain dehydrogenase compare
BPHYT_RS26920 +0.6 2.9 major facilitator transporter compare
BPHYT_RS30760 +0.6 2.4 MmgE/PrpD family protein compare
BPHYT_RS27455 +0.6 1.0 rod shape-determining protein MreB compare
BPHYT_RS00920 +0.6 1.6 transposase compare
BPHYT_RS23350 +0.6 1.3 NAD-dependent epimerase/dehydratase compare
BPHYT_RS32750 +0.6 1.1 lipoprotein compare
BPHYT_RS25095 +0.6 1.2 AraC family transcriptional regulator compare
BPHYT_RS22730 +0.6 2.3 serine/threonine kinase compare
BPHYT_RS31460 +0.6 1.2 hypothetical protein compare
BPHYT_RS13470 +0.6 0.7 arylsulfate sulfotransferase compare
BPHYT_RS30185 +0.6 1.2 DNA-directed RNA polymerase subunit alpha compare
BPHYT_RS04215 +0.6 1.4 hypothetical protein compare
BPHYT_RS33825 +0.6 1.5 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS36090 +0.6 1.2 hypothetical protein compare
BPHYT_RS01115 +0.6 1.5 hypothetical protein compare
BPHYT_RS23030 +0.6 1.1 gluconate 2-dehydrogenase compare
BPHYT_RS04710 +0.5 1.6 hypothetical protein compare
BPHYT_RS33070 +0.5 2.3 haloacid dehalogenase compare
BPHYT_RS35640 +0.5 3.2 hypothetical protein compare
BPHYT_RS10165 +0.5 1.0 transcriptional regulator compare
BPHYT_RS27270 +0.5 1.9 photosystem reaction center subunit H compare
BPHYT_RS17825 +0.5 2.1 transcriptional regulator compare
BPHYT_RS13170 +0.5 1.8 ATPase compare
BPHYT_RS09815 +0.5 1.6 malate synthase compare
BPHYT_RS30450 +0.5 0.7 ABC transporter permease compare
BPHYT_RS32845 +0.5 2.2 ABC transporter substrate-binding protein compare
BPHYT_RS03830 +0.5 1.6 hypothetical protein compare
BPHYT_RS14255 +0.5 4.4 ABC transporter compare
BPHYT_RS35645 +0.5 2.2 porin compare
BPHYT_RS32340 +0.5 1.6 LrgA family protein compare
BPHYT_RS26975 +0.5 1.1 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS33460 +0.5 0.8 protocatechuate 3,4-dioxygenase subunit alpha compare
BPHYT_RS20070 +0.5 1.3 hypothetical protein compare
BPHYT_RS06455 +0.5 2.0 potassium-transporting ATPase C chain compare
BPHYT_RS21330 +0.5 1.1 hypothetical protein compare
BPHYT_RS20665 +0.5 0.7 LysR family transcriptional regulator compare
BPHYT_RS21790 +0.5 1.3 hypothetical protein compare
BPHYT_RS02035 +0.5 1.4 hypothetical protein compare
BPHYT_RS10265 +0.5 2.3 aminotransferase compare
BPHYT_RS14070 +0.5 1.2 hypothetical protein compare
BPHYT_RS18790 +0.5 3.9 ATP synthase compare
BPHYT_RS23395 +0.5 1.0 glycosyl transferase compare
BPHYT_RS11095 +0.5 2.0 glycosyl transferase compare
BPHYT_RS32240 +0.5 1.0 chromosome replication initiation inhibitor protein compare
BPHYT_RS35660 +0.5 2.8 membrane protein compare
BPHYT_RS08645 +0.5 1.5 sulfonate ABC transporter compare
BPHYT_RS18785 +0.5 1.2 flagellar assembly protein FliH compare
BPHYT_RS09245 +0.5 2.1 ABC transporter ATP-binding protein compare
BPHYT_RS07165 +0.5 1.1 peptide ABC transporter permease compare
BPHYT_RS20280 +0.5 1.1 hypothetical protein compare
BPHYT_RS13835 +0.5 0.8 S-adenosylhomocysteine nucleosidase compare
BPHYT_RS30995 +0.5 0.6 glucose-1-phosphate thymidylyltransferase compare
BPHYT_RS01815 +0.5 1.6 sugar ABC transporter permease compare
BPHYT_RS02660 +0.5 0.8 membrane protein compare
BPHYT_RS26490 +0.5 0.8 hypothetical protein compare
BPHYT_RS29720 +0.5 0.7 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
BPHYT_RS02395 +0.5 2.7 ABC transporter compare
BPHYT_RS00740 +0.5 1.6 hypothetical protein compare
BPHYT_RS20465 +0.5 1.3 LysR family transcriptional regulator compare
BPHYT_RS03965 +0.5 1.6 GDP-mannose mannosyl hydrolase compare
BPHYT_RS18830 +0.5 2.8 flagellar biosynthesis protein FliQ compare
BPHYT_RS05190 +0.5 2.4 ADP-heptose--LPS heptosyltransferase compare
BPHYT_RS34040 +0.5 2.0 hypothetical protein compare
BPHYT_RS34530 +0.5 1.1 LysR family transcriptional regulator compare
BPHYT_RS24730 +0.5 1.6 AraC family transcriptional regulator compare
BPHYT_RS14790 +0.5 1.9 D-amino acid dehydrogenase compare
BPHYT_RS31970 +0.5 1.2 cupin compare
BPHYT_RS27345 +0.5 1.0 aldehyde dehydrogenase compare
BPHYT_RS00955 +0.5 1.2 DNA polymerase compare
BPHYT_RS14005 +0.5 1.7 ABC transporter compare
BPHYT_RS08200 +0.5 2.8 pilus assembly protein compare
BPHYT_RS07335 +0.5 2.0 nitrate ABC transporter permease compare
BPHYT_RS28900 +0.5 1.2 2-oxo-hepta-3-ene-1,7-dioic acid hydratase compare
BPHYT_RS05585 +0.5 1.3 hypothetical protein compare
BPHYT_RS33245 +0.5 1.9 hypothetical protein compare
BPHYT_RS28260 +0.5 2.2 oxidoreductase compare
BPHYT_RS13310 +0.5 1.2 dihydropyrimidine dehydrogenase subunit B compare
BPHYT_RS16390 +0.5 1.7 MarR family transcriptional regulator compare
BPHYT_RS21070 +0.5 1.5 ferredoxin compare
BPHYT_RS25640 +0.5 1.5 MFS transporter compare
BPHYT_RS11710 +0.5 2.2 diguanylate cyclase compare
BPHYT_RS36240 +0.5 1.7 hypothetical protein compare
BPHYT_RS02985 +0.5 1.3 MaoC family dehydratase compare
BPHYT_RS29800 +0.5 1.2 hypothetical protein compare
BPHYT_RS05570 +0.5 1.1 hypothetical protein compare
BPHYT_RS30375 +0.5 2.1 hypothetical protein compare
BPHYT_RS32915 +0.5 1.8 LysR family transcriptional regulator compare
BPHYT_RS03285 +0.5 1.9 aminoglycoside phosphotransferase compare
BPHYT_RS18945 +0.5 2.5 flagellar biosynthesis protein FlhB compare
BPHYT_RS28995 +0.5 1.8 histidine kinase compare
BPHYT_RS09390 +0.5 1.3 ABC transporter permease compare
BPHYT_RS26025 +0.5 0.7 hypothetical protein compare
BPHYT_RS05085 +0.5 1.5 LysR family transcriptional regulator compare
BPHYT_RS33540 +0.4 1.8 hypothetical protein compare
BPHYT_RS18895 +0.4 1.7 flagellar basal body rod protein FlgB compare
BPHYT_RS16505 +0.4 1.4 HAD family hydrolase compare
BPHYT_RS26670 +0.4 1.9 Cobalt-precorrin-5B C(1)-methyltransferase compare
BPHYT_RS31690 +0.4 1.3 hypothetical protein compare
BPHYT_RS18795 +0.4 2.8 flagellar export protein FliJ compare
BPHYT_RS30810 +0.4 1.1 transcriptional regulator compare
BPHYT_RS14150 +0.4 1.6 transposase compare
BPHYT_RS36245 +0.4 1.4 hypothetical protein compare
BPHYT_RS06150 +0.4 3.1 aldehyde dehydrogenase compare
BPHYT_RS26955 +0.4 0.6 succinylglutamate desuccinylase compare
BPHYT_RS35615 +0.4 0.8 hypothetical protein compare
BPHYT_RS21205 +0.4 1.7 high-affinity nickel-transporter compare
BPHYT_RS25285 +0.4 1.4 AraC family transcriptional regulator compare
BPHYT_RS28620 +0.4 1.4 enoyl-CoA hydratase compare
BPHYT_RS30265 +0.4 0.7 hypothetical protein compare
BPHYT_RS36145 +0.4 1.3 hypothetical protein compare
BPHYT_RS26915 +0.4 1.9 Fis family transcriptional regulator compare
BPHYT_RS18890 +0.4 1.9 flagellar basal body rod protein FlgC compare
BPHYT_RS23020 +0.4 1.2 alcohol dehydrogenase compare
BPHYT_RS10410 +0.4 1.5 monooxygenase compare
BPHYT_RS12820 +0.4 1.7 D-alanyl-D-alanine carboxypeptidase compare
BPHYT_RS05395 +0.4 0.8 hypothetical protein compare
BPHYT_RS01275 +0.4 2.5 DNA-directed DNA polymerase compare
BPHYT_RS26040 +0.4 1.0 cysteine hydrolase compare
BPHYT_RS26515 +0.4 1.6 HAD family hydrolase compare
BPHYT_RS26930 +0.4 2.5 mechanosensitive ion channel protein compare
BPHYT_RS31600 +0.4 1.7 hypothetical protein compare
BPHYT_RS33700 +0.4 1.4 ModE family transcriptional regulator compare
BPHYT_RS15800 +0.4 1.8 GntR family transcriptional regulator compare
BPHYT_RS23465 +0.4 1.8 aliphatic nitrilase compare
BPHYT_RS24965 +0.4 0.9 hypothetical protein compare
BPHYT_RS31040 +0.4 1.3 sugar transporter compare
BPHYT_RS25770 +0.4 0.9 hypothetical protein compare
BPHYT_RS35735 +0.4 0.9 nitroreductase compare
BPHYT_RS09850 +0.4 0.9 molybdopterin oxidoreductase compare
BPHYT_RS10205 +0.4 1.4 D-lactate dehydrogenase compare
BPHYT_RS18900 +0.4 3.5 flagella basal body P-ring formation protein FlgA compare
BPHYT_RS18745 +0.4 2.1 coniferyl aldehyde dehydrogenase compare
BPHYT_RS29550 +0.4 1.1 RND transporter compare
BPHYT_RS00710 +0.4 1.2 branched-chain amino acid ABC transporter ATPase compare
BPHYT_RS27175 +0.4 0.6 DNA-binding protein compare
BPHYT_RS21050 +0.4 1.6 aldehyde-activating protein compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in pH experiments