Experiment set2IT060 for Sinorhizobium meliloti 1021

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
SMc02850 -5.3 -3.6 DNA polymerase I compare
SMc01845 -3.9 -3.0 transglycosylase transmembrane protein compare
SMc02140 -3.8 -1.6 phosphate regulon transcriptional regulatory protein compare
SMc02909 -3.7 -3.2 transglycosylase transmembrane protein compare
SMc00334 -3.4 -2.6 cytidylate kinase compare
SMc01880 -3.3 -3.2 pantoate--beta-alanine ligase compare
SMc02144 -3.3 -5.3 phosphate ABC transporter permease compare
SMc02147 -3.0 -9.3 phosphate regulon sensor histidine kinase transmembrane protein compare
SMc00726 -3.0 -0.9 thiol:disulfide interchange redox-active center transmembrane protein compare
SMc02234 -2.8 -3.6 hypothetical protein compare
SMc03850 -2.8 -1.8 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SMc02778 -2.7 -1.2 hydroxyacid aldolase compare
SMc00914 -2.6 -5.7 oxidoreductase compare
SMc00963 -2.6 -5.0 hypothetical protein compare
SMc01364 -2.5 -1.4 DNA topoisomerase I compare
SMc02115 -2.4 -1.1 hypothetical protein compare
SMc03967 -2.4 -1.5 Holliday junction resolvase compare
SMc01147 -2.4 -3.5 coproporphyrinogen III oxidase compare
SMc02484 -2.4 -8.0 amino acid efflux transmembrane protein compare
SMc04296 -2.4 -1.0 cell division protein FtsZ compare
SMc02833 -2.3 -2.7 penicillin-insensitive murein endopeptidase compare
SMc04121 -2.3 -2.1 uracil phosphoribosyltransferase compare
SMc02510 -2.2 -1.0 ferric uptake regulation protein compare
SMc01881 -2.2 -4.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc02142 -2.2 -4.9 phosphate transporter ATP-binding protein compare
SMc00580 -2.1 -4.2 4-hydroxythreonine-4-phosphate dehydrogenase compare
SMc02867 -2.1 -4.0 multidrug-efflux system transmembrane protein compare
SMc01579 -2.1 -1.3 hypothetical protein compare
SMc02232 -2.1 -3.9 hypothetical protein compare
SMc00492 -2.0 -1.1 hypothetical protein compare
SMc03182 -1.9 -6.5 pH adaptation potassium efflux system E transmembrane protein compare
SMc00579 -1.9 -6.7 dimethyladenosine transferase compare
SMc02143 -1.9 -3.7 phosphate ABC transporter permease compare
SMc04330 -1.8 -2.5 trimethylamine methyltransferase compare
SMc03180 -1.8 -5.4 monovalent cation/H+ antiporter subunit C compare
SMc01342 -1.7 -5.2 hypothetical protein compare
SMc03878 -1.7 -2.8 acetoacetyl-CoA reductase compare
SMc00067 -1.7 -7.0 outer-membranne lipoprotein compare
SMc04024 -1.7 -5.3 membrane-bound lytic murein transglycosylase compare
SMc01208 -1.7 -2.3 peptidyl-prolyl cis-trans isomerase B protein compare
SMc02753 -1.7 -1.4 PTS system transporter subunit IIA compare
SMc03763 -1.7 -3.1 cytosine-specific methyltransferase compare
SMc02435 -1.7 -2.3 methyltransferase compare
SMc02145 -1.6 -1.0 signal peptide protein compare
SMc01361 -1.6 -4.6 dihydroorotase compare
SMc02077 -1.6 -3.2 exodeoxyribonuclease III protein compare
SMc00556 -1.6 -4.4 DNA repair protein RadA compare
SMc03773 -1.6 -5.4 hypothetical protein compare
SMc02114 -1.6 -3.6 hypothetical protein compare
SMc01012 -1.5 -1.6 hypothetical protein compare
SMc02683 -1.5 -1.9 hypothetical protein compare
SM_b20452 -1.5 -3.4 hypothetical protein compare
SMa0789 -1.5 -3.6 GntR family transcriptional regulator compare
SM_b21524 -1.5 -2.2 septum formation inhibitor compare
SMc01877 -1.5 -5.9 DNA repair protein compare
SMc03181 -1.5 -5.9 monovalent cation/H+ antiporter subunit D compare
SMc00496 -1.4 -1.3 hypothetical protein compare
SMc02868 -1.4 -4.1 multidrug efflux system protein compare
SMc00331 -1.4 -2.8 hypothetical protein compare
SMc02582 -1.4 -3.5 hypothetical protein compare
SMc01716 -1.3 -5.3 sensor histidine kinase transmembrane protein compare
SMc01187 -1.3 -1.8 rare lipoprotein A compare
SMc03100 -1.3 -1.7 hypothetical protein compare
SMc02451 -1.3 -1.2 hypothetical protein compare
SMc02856 -1.3 -5.5 penicillin-binding protein compare
SMc00856 -1.3 -1.1 hypothetical protein compare
SMc00691 -1.3 -3.0 site-specific tyrosine recombinase XerD compare
SM_b20413 -1.3 -1.1 hypothetical protein compare
SMc00760 -1.3 -4.3 recombinase A compare
SMc02719 -1.3 -0.9 transposase compare
SM_b20758 -1.3 -1.0 ArsR family transcriptional regulator compare
SMc02149 -1.3 -1.6 hypothetical protein compare
SMc02102 -1.2 -3.5 hypothetical protein compare
SMc01700 -1.2 -3.9 peptidyl-prolyl cis-trans isomerase A compare
SMc02641 -1.2 -4.3 UDP-glucose 6-dehydrogenase compare
SMc03179 -1.2 -7.3 monovalent cation/H+ antiporter subunit A compare
SMc02886 -1.2 -1.6 signal peptide protein compare
SMc02338 -1.2 -1.7 periplasmic binding ABC transporter protein compare
SMc02071 -1.2 -3.4 hydrolase glycosidase compare
SMc01850 -1.2 -1.7 hypothetical protein compare
SMc03183 -1.2 -2.9 monovalent cation/H+ antiporter subunit F compare
SMc01577 -1.2 -1.5 hypothetical protein compare
SMc00976 -1.2 -1.1 enoyl-CoA hydratase compare
SMc01619 -1.2 -2.0 hypothetical protein compare
SMc00557 -1.1 -3.3 alanine racemase compare
SMc01929 -1.1 -2.2 hypothetical protein compare
SMc03993 -1.1 -2.3 hypothetical protein compare
SMc03774 -1.1 -1.8 hypothetical protein compare
SMc04233 -1.1 -2.5 hypothetical protein compare
SMc01438 -1.1 -3.0 protease precursor signal peptide protein compare
SMc00987 -1.1 -2.0 hypothetical protein compare
SMc00088 -1.1 -1.3 hypothetical protein compare
SMc00619 -1.1 -1.3 hypothetical protein compare
SMc01461 -1.1 -4.0 DNA helicase II protein compare
SMc03184 -1.1 -0.9 PH adaptation potassium efflux system G transmembrane protein compare
SMc01259 -1.1 -1.6 hypothetical protein compare
SM_b21096 -1.1 -1.0 amino acid transporter ABC transporter ATP-binding protein compare
SMc01220 -1.1 -3.1 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc03229 -1.1 -1.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc00296 -1.1 -6.3 POLY3-hydroxybutyrate polymerase compare
SMc03128 -1.1 -3.4 ABC transporter permease compare
SMa2299 -1.1 -1.4 hypothetical protein compare
SMc00812 -1.1 -2.3 hypothetical protein compare
SM_b20509 -1.0 -2.4 transcriptional regulator compare
SMc04090 -1.0 -1.7 sun protein compare
SMc04391 -1.0 -1.1 3-ketoacyl-ACP reductase compare
SMc01568 -1.0 -1.0 hypothetical protein compare
SMc00025 -1.0 -5.7 pyruvate phosphate dikinase compare
SMa0738 -1.0 -2.0 CspA6 cold shock protein transcriptional regulator compare
SMc04231 -1.0 -5.9 excinuclease ABC subunit B compare
SMc03140 -1.0 -2.3 transcriptional regulator compare
SMa1239 -1.0 -1.5 NapD component of periplasmic nitrate reductase compare
SM_b20774 -1.0 -1.8 hypothetical protein compare
SMc00451 -1.0 -4.2 processing protease compare
SMc01183 -1.0 -1.3 LexA repressor compare
SM_b20889 -1.0 -3.0 hypothetical protein compare
SMc02758 -1.0 -3.8 nucleotidyl transferase compare
SMc03051 -1.0 -2.6 flagellar biosynthesis repressor FlbT compare
SMc01853 -0.9 -2.5 hypothetical protein compare
SMa0112 -0.9 -1.9 hypothetical protein compare
SMc02280 -0.9 -1.3 hypothetical protein compare
SMc02634 -0.9 -6.3 hypothetical protein compare
SM_b21523 -0.9 -1.8 cell division inhibitor protein compare
SMc00396 -0.9 -1.7 hypothetical protein compare
SMc02505 -0.9 -1.2 hypothetical protein compare
SMc00353 -0.9 -1.4 transmembrane protein compare
SMa5031 -0.9 -1.2 hypothetical protein compare
SM_b20370 -0.9 -2.4 ATP-binding transport protein compare
SMc04169 -0.9 -5.7 transcriptional regulator compare
SMc00228 -0.9 -6.1 ATP-dependent DNA helicase RecG compare
SMc00602 -0.9 -2.9 excinuclease ABC subunit C compare
SMc02569 -0.9 -2.4 imidazole glycerol phosphate synthase subunit HisF compare
SMa0050 -0.9 -2.2 hypothetical protein compare
SMc02866 -0.9 -2.5 transcriptional regulator compare
SM_b20896 -0.9 -3.0 LysR family transcriptional regulator compare
SMc04340 -0.9 -5.6 oxidoreductase compare
SMc02978 -0.9 -2.4 hypothetical protein compare
SMc00103 -0.9 -4.3 alpha-halocarboxylic acid dehalogenase compare
SMa1118 -0.9 -1.2 HspC2 heat shock protein compare
SM_b20123 -0.9 -2.1 transcriptional regulator compare
SMc02576 -0.9 -1.2 acetyltransferase compare
SM_b20602 -0.9 -2.6 branched-chain amino acid ABC transporter ATP-binding protein compare
SMc04388 -0.9 -4.1 beta alanine--pyruvate transaminase compare
SM_b20595 -0.9 -3.3 cell division protein FtsK compare
SMc02724 -0.8 -2.0 hypothetical protein compare
SMc01039 -0.8 -1.6 hypothetical protein compare
SM_b20450 -0.8 -5.6 regulatory protein compare
SMc00527 -0.8 -6.0 anhydro-N-acetylmuramic acid kinase compare
SMc01360 -0.8 -1.7 aspartate carbamoyltransferase catalytic subunit compare
SMa0905 -0.8 -0.9 hypothetical protein compare
SM_b20987 -0.8 -1.3 siroheme synthase compare
SMc00378 -0.8 -1.5 exodeoxyribonuclease VII large subunit compare
SMc02172 -0.8 -3.6 transcriptional regulator compare
SMc03868 -0.8 -2.4 hypothetical protein compare
SMc00665 -0.8 -1.4 hypothetical protein compare
SMa0360 -0.8 -2.3 transposase compare
SMc00104 -0.8 -2.6 hypothetical protein compare
SMc01709 -0.8 -2.3 signal peptide protein compare
SMc01457 -0.8 -4.9 transport transmembrane protein compare
SMc00948 -0.8 -4.5 glutamine synthetase compare
SMc01280 -0.8 -1.2 protease compare
SMc03060 -0.8 -5.5 transcriptional regulator compare
SMc00876 -0.8 -3.2 ATP-binding MRP protein compare
SM_b20258 -0.8 -2.2 transcriptional regulator compare
SMc00675 -0.8 -5.8 hypothetical protein compare
SM_b20547 -0.8 -1.1 hypothetical protein compare
SMc03979 -0.8 -1.2 glyceraldehyde-3-phosphate dehydrogenase compare
SMc01651 -0.8 -1.8 transcriptional regulator compare
SM_b20998 -0.8 -4.4 hypothetical protein compare
SMc02979 -0.8 -2.6 hypothetical protein compare
SMc03245 -0.8 -3.2 amidase compare
SMc04168 -0.8 -2.4 hypothetical protein compare
SM_b21218 -0.8 -1.6 glucosamine-6-phosphate deaminase, isomerizing (EC 3.5.99.6) (from data) compare
SMa1770 -0.8 -0.8 hypothetical protein compare
SMc03124 -0.8 -2.2 periplasmic binding ABC transporter protein compare
SMc00970 -0.8 -1.5 exodeoxyribonuclease VII small subunit compare
SMc03227 -0.8 -2.3 hypothetical protein compare
SMc00255 -0.7 -4.0 hypothetical protein compare
SM_b20447 -0.7 -4.4 hypothetical protein compare
SMc02362 -0.7 -1.7 cytochrome c-type biogenesis protein CcmE compare
SMc01517 -0.7 -1.4 hypothetical protein compare
SM_b20822 -0.7 -3.7 cell surface polysaccharide export ABC-2 transporter permease, close relative to wzm1Y20833 compare
SM_b20563 -0.7 -1.4 hypothetical protein compare
SM_b20273 -0.7 -2.0 hypothetical protein compare
SMc04389 -0.7 -1.5 hydroxypyruvate reductase compare
SMc02319 -0.7 -1.9 hypothetical protein compare
SMa0323 -0.7 -3.2 hypothetical protein compare
SMa1153 -0.7 -1.7 hypothetical protein compare
SMc02658 -0.7 -1.3 hypothetical protein compare
SM_b20901 -0.7 -4.0 transcriptional regulator compare
SMc01347 -0.7 -1.8 hypothetical protein compare
SMc03942 -0.7 -5.1 hypothetical protein compare
SMc02495 -0.7 -0.8 translaldolase compare
SMa1576 -0.7 -2.4 CpaB2 pilus assembly protein compare
SMc00689 -0.7 -2.8 lipoprotein compare
SMc02061 -0.7 -4.2 biotin-regulated protein compare
SMa0093 -0.7 -1.4 Branched-chain amino acid aminotransferase compare
SMc00286 -0.7 -1.1 hemolysin-type calcium-binding protein compare
SMa0265 -0.7 -1.4 dehydrogenase compare
SMa1442 -0.7 -2.6 GntR family transcriptional regulator compare


Specific Phenotypes

For 12 genes in this experiment