Experiment set2IT060 for Cupriavidus basilensis FW507-4G11

Compare to:

D-Gluconic Acid sodium salt carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS16265 -8.2 -5.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS18305 -6.6 -4.5 anthranilate phosphoribosyltransferase compare
RR42_RS05860 -6.5 -4.5 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS14365 -6.1 -4.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS19005 -6.0 -4.1 3-dehydroquinate synthase compare
RR42_RS33255 -5.9 -3.8 protein-tyrosine phosphatase compare
RR42_RS16255 -5.8 -7.9 sulfate adenylyltransferase compare
RR42_RS18300 -5.7 -5.5 anthranilate synthase subunit II compare
RR42_RS06485 -5.7 -7.7 chorismate synthase compare
RR42_RS33240 -5.5 -11.2 GDP-L-fucose synthase compare
RR42_RS17060 -5.5 -17.6 histidine kinase compare
RR42_RS16250 -5.3 -8.1 sulfate adenylyltransferase compare
RR42_RS14400 -5.2 -6.2 isopropylmalate isomerase compare
RR42_RS16245 -5.2 -5.1 uroporphyrin-III methyltransferase compare
RR42_RS15415 -5.2 -5.0 membrane protein compare
RR42_RS01385 -5.1 -4.4 5,10-methylenetetrahydrofolate reductase compare
RR42_RS14390 -5.1 -4.8 3-isopropylmalate dehydratase compare
RR42_RS01160 -5.0 -10.1 homoserine O-acetyltransferase compare
RR42_RS04475 -4.9 -9.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS18295 -4.9 -11.3 anthranilate synthase component I compare
RR42_RS17055 -4.9 -9.1 LuxR family transcriptional regulator compare
RR42_RS30655 -4.8 -8.5 LysR family transcriptional regulator compare
RR42_RS04895 -4.8 -10.7 serine/threonine protein phosphatase compare
RR42_RS17565 -4.8 -14.5 LysR family transcriptional regulator compare
RR42_RS33215 -4.7 -13.5 transferase compare
RR42_RS19010 -4.7 -9.0 shikimate kinase compare
RR42_RS15890 -4.7 -9.7 heme biosynthesis protein HemY compare
RR42_RS35875 -4.6 -11.1 UDP-galactose-4-epimerase compare
RR42_RS14320 -4.5 -6.2 O-succinylhomoserine sulfhydrylase compare
RR42_RS15905 -4.5 -13.1 phosphoenolpyruvate carboxylase compare
RR42_RS33260 -4.4 -9.3 multidrug MFS transporter compare
RR42_RS12040 -4.3 -13.7 MFS transporter compare
RR42_RS37400 -4.3 -1.8 6-phosphogluconolactonase compare
RR42_RS33250 -4.2 -8.0 tyrosine protein kinase compare
RR42_RS16270 -4.2 -11.4 sulfite reductase compare
RR42_RS15410 -4.2 -6.9 membrane protein compare
RR42_RS33355 -4.1 -5.6 membrane protein compare
RR42_RS06130 -4.1 -7.0 Gluconokinase (EC 2.7.1.12) (from data) conserved
RR42_RS18990 -4.1 -18.7 glutamate synthase compare
RR42_RS01290 -4.0 -7.8 thiamine biosynthesis protein ThiC compare
RR42_RS30660 -4.0 -7.3 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS33195 -4.0 -11.7 UDP-sugar lipid carrier transferase compare
RR42_RS33210 -3.8 -5.3 teichoic acid biosynthesis protein compare
RR42_RS07365 -3.8 -3.6 pyruvate dehydrogenase compare
RR42_RS17645 -3.7 -8.1 shikimate dehydrogenase compare
RR42_RS02045 -3.7 -9.1 GTPase compare
RR42_RS33235 -3.5 -8.8 GDP-mannose 4,6-dehydratase compare
RR42_RS16280 -3.5 -6.5 transcriptional regulator compare
RR42_RS33245 -3.4 -7.4 mannose-1-phosphate guanyltransferase compare
RR42_RS14385 -3.4 -4.1 3-isopropylmalate dehydrogenase compare
RR42_RS01845 -3.3 -2.0 glycerol-3-phosphate dehydrogenase compare
RR42_RS17105 -3.2 -11.3 Clp protease ClpX compare
RR42_RS18985 -3.2 -6.4 glutamate synthase compare
RR42_RS07605 -3.2 -7.2 poly-beta-hydroxybutyrate polymerase compare
RR42_RS07555 -3.2 -3.4 potassium transporter Kup compare
RR42_RS15470 -3.2 -2.5 biopolymer transporter ExbD compare
RR42_RS14360 -3.0 -1.7 tryptophan synthase subunit alpha compare
RR42_RS14790 -2.9 -8.5 cobalamin biosynthesis protein CobD compare
RR42_RS01775 -2.8 -8.5 glutamate--cysteine ligase compare
RR42_RS05990 -2.8 -7.5 aromatic amino acid aminotransferase compare
RR42_RS04460 -2.8 -4.5 chorismate mutase compare
RR42_RS06120 -2.7 -4.7 transcriptional regulator compare
RR42_RS03095 -2.7 -3.1 succinyl-CoA synthetase subunit beta compare
RR42_RS15895 -2.7 -6.6 uroporphyrinogen III methyltransferase compare
RR42_RS19065 -2.7 -11.3 transcriptional regulator compare
RR42_RS04535 -2.7 -5.6 cysteine synthase compare
RR42_RS16240 -2.7 -1.5 cobalamin biosynthesis protein CbiX compare
RR42_RS05955 -2.6 -1.9 hypothetical protein compare
RR42_RS16260 -2.6 -1.9 phosphoadenosine phosphosulfate reductase compare
RR42_RS05420 -2.6 -3.7 membrane protein compare
RR42_RS28860 -2.5 -7.7 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45) (from data) compare
RR42_RS28835 -2.5 -8.4 gluconate:H+ symporter (gntT) (from data) conserved
RR42_RS19090 -2.3 -2.3 cytochrome C compare
RR42_RS33205 -2.3 -9.0 UDP-glucose 6-dehydrogenase compare
RR42_RS17690 -2.3 -5.2 3-dehydroquinate dehydratase compare
RR42_RS03080 -2.2 -4.7 recombinase RecA compare
RR42_RS06095 -2.2 -3.8 hypothetical protein compare
RR42_RS06125 -2.2 -4.5 phosphogluconate dehydratase compare
RR42_RS30640 -2.2 -5.8 DNA mismatch repair protein MutT compare
RR42_RS02705 -2.2 -2.8 Holliday junction DNA helicase RuvA compare
RR42_RS18850 -2.1 -3.5 preprotein translocase subunit TatC compare
RR42_RS01920 -2.1 -4.0 protoheme IX farnesyltransferase compare
RR42_RS21000 -2.1 -2.3 glycosyl transferase compare
RR42_RS26935 -2.1 -4.2 farnesyl-diphosphate farnesyltransferase compare
RR42_RS01505 -2.0 -2.3 tRNA-Cys compare
RR42_RS16275 -2.0 -3.8 membrane protein compare
RR42_RS15450 -2.0 -2.8 Tol system periplasmic component YbgF compare
RR42_RS18970 -1.9 -9.5 toluene ABC transporter ATP-binding protein compare
RR42_RS21220 -1.8 -2.9 iron transporter FeoB compare
RR42_RS12550 -1.8 -5.1 hypothetical protein compare
RR42_RS07380 -1.7 -4.7 dihydrolipoamide dehydrogenase compare
RR42_RS26900 -1.7 -2.8 enoyl-CoA hydratase compare
RR42_RS18310 -1.7 -1.3 indole-3-glycerol-phosphate synthase compare
RR42_RS20205 -1.7 -2.5 chromosome partitioning protein compare
RR42_RS19885 -1.6 -1.4 aminoglycoside transporter compare
RR42_RS01380 -1.6 -1.6 membrane protein compare
RR42_RS15455 -1.6 -6.4 membrane protein compare
RR42_RS28840 -1.5 -2.4 hypothetical protein compare
RR42_RS15475 -1.5 -6.1 protein tolQ compare
RR42_RS18960 -1.5 -9.6 ABC transporter substrate-binding protein compare
RR42_RS21435 -1.5 -3.5 hypothetical protein compare
RR42_RS02060 -1.5 -6.6 nucleotide-binding protein compare
RR42_RS02500 -1.5 -2.0 TetR family transcriptional regulator compare
RR42_RS18965 -1.5 -9.5 ABC transporter permease compare
RR42_RS13800 -1.5 -6.7 formyltetrahydrofolate deformylase compare
RR42_RS07565 -1.5 -6.2 transcription accessory protein compare
RR42_RS24605 -1.5 -6.3 TetR family transcriptional regulator compare
RR42_RS15785 -1.5 -7.5 glycosyl transferase family 28 compare
RR42_RS11885 -1.4 -7.8 (protein-PII) uridylyltransferase compare
RR42_RS17390 -1.4 -5.4 ATP-dependent DNA helicase RecG compare
RR42_RS13040 -1.4 -3.5 iron transporter compare
RR42_RS28290 -1.4 -4.7 DNA-binding protein compare
RR42_RS15420 -1.4 -1.5 hypothetical protein compare
RR42_RS11785 -1.4 -1.8 NfeD-like family protein 1 compare
RR42_RS13910 -1.4 -6.5 glutamate racemase compare
RR42_RS08350 -1.4 -1.7 hypothetical protein compare
RR42_RS32235 -1.4 -5.0 hopanoid biosynthesis associated radical SAM protein HpnH compare
RR42_RS18855 -1.3 -2.6 preprotein translocase compare
RR42_RS04470 -1.3 -3.1 prephenate dehydrogenase compare
RR42_RS18815 -1.3 -5.6 cytochrome C compare
RR42_RS21095 -1.3 -3.2 GntR family transcriptional regulator compare
RR42_RS05425 -1.3 -4.4 membrane protein compare
RR42_RS25200 -1.3 -4.3 TetR family transcriptional regulator compare
RR42_RS20440 -1.3 -1.4 histidine kinase compare
RR42_RS28845 -1.3 -3.8 D-aminoacylase compare
RR42_RS30410 -1.2 -1.7 hypothetical protein compare
RR42_RS20210 -1.2 -2.8 16S rRNA methyltransferase compare
RR42_RS29610 -1.2 -0.9 cytochrome C2 compare
RR42_RS06580 -1.2 -4.1 aminoacrylate peracid reductase compare
RR42_RS00115 -1.2 -1.1 hypothetical protein compare
RR42_RS00790 -1.2 -6.7 chemotaxis protein CheY compare
RR42_RS12615 -1.2 -2.2 LexA family transcriptional regulator compare
RR42_RS15710 -1.2 -6.2 LPS biosynthesis protein compare
RR42_RS11770 -1.1 -2.1 cyclase compare
RR42_RS26925 -1.1 -2.0 membrane protein compare
RR42_RS00955 -1.1 -3.6 hydroxymethylglutaryl-CoA lyase compare
RR42_RS29785 -1.1 -2.7 hypothetical protein compare
RR42_RS04765 -1.1 -2.4 3-oxoacyl-ACP reductase compare
RR42_RS12980 -1.1 -4.2 chemotaxis protein CheY compare
RR42_RS02775 -1.1 -2.1 molecular chaperone SurA compare
RR42_RS36485 -1.1 -7.7 serine/threonine protein kinase compare
RR42_RS10310 -1.1 -2.0 NADPH:quinone reductase compare
RR42_RS34215 -1.1 -1.2 ferredoxin compare
RR42_RS15460 -1.1 -3.3 translocation protein TolB compare
RR42_RS26540 -1.1 -1.1 3-phosphoglycerate dehydrogenase compare
RR42_RS36475 -1.1 -5.8 SpoVR family protein compare
RR42_RS18825 -1.1 -2.4 ubiquinol-cytochrome C reductase compare
RR42_RS07615 -1.1 -1.5 3-ketoacyl-ACP reductase compare
RR42_RS14080 -1.1 -5.7 RNA polymerase sigma factor RpoE compare
RR42_RS05485 -1.1 -2.3 polynucleotide phosphorylase/polyadenylase compare
RR42_RS14540 -1.1 -3.1 DNA glycosylase compare
RR42_RS19445 -1.1 -3.9 TetR family transcriptional regulator compare
RR42_RS25785 -1.1 -2.6 TetR family transcriptional regulator compare
RR42_RS17720 -1.0 -2.0 sugar kinase compare
RR42_RS15525 -1.0 -0.9 hypothetical protein compare
RR42_RS09580 -1.0 -1.1 hypothetical protein compare
RR42_RS04700 -1.0 -0.8 ribonuclease G compare
RR42_RS18270 -1.0 -3.4 murein transglycosylase compare
RR42_RS14055 -1.0 -1.4 elongation factor 4 compare
RR42_RS02310 -1.0 -1.8 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
RR42_RS15745 -1.0 -6.2 group1 glycosyl transferase compare
RR42_RS25470 -1.0 -1.9 alpha/beta hydrolase compare
RR42_RS33575 -1.0 -1.9 hypothetical protein compare
RR42_RS06585 -1.0 -7.5 GTP pyrophosphokinase compare
RR42_RS36415 -1.0 -1.9 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
RR42_RS05920 -1.0 -3.2 HrcA family transcriptional regulator compare
RR42_RS07245 -1.0 -1.8 hypothetical protein compare
RR42_RS09630 -1.0 -2.3 hypothetical protein compare
RR42_RS06870 -1.0 -3.2 hypothetical protein compare
RR42_RS18945 -1.0 -2.8 toluene tolerance protein compare
RR42_RS35295 -1.0 -1.7 diguanylate cyclase compare
RR42_RS12050 -1.0 -4.0 DNA polymerase compare
RR42_RS36480 -0.9 -6.1 hypothetical protein compare
RR42_RS14965 -0.9 -2.6 hypothetical protein compare
RR42_RS11840 -0.9 -3.0 zinc metalloprotease compare
RR42_RS02270 -0.9 -1.4 hypothetical protein compare
RR42_RS07225 -0.9 -1.2 hypothetical protein compare
RR42_RS33180 -0.9 -5.4 hypothetical protein compare
RR42_RS18930 -0.9 -2.9 BolA family transcriptional regulator compare
RR42_RS18820 -0.9 -3.6 cytochrome B compare
RR42_RS06810 -0.9 -2.4 hypothetical protein compare
RR42_RS18995 -0.9 -3.8 transposase compare
RR42_RS17050 -0.9 -2.8 phosphoribosylglycinamide formyltransferase compare
RR42_RS08365 -0.9 -4.1 hypothetical protein compare
RR42_RS12015 -0.9 -1.2 dihydrolipoamide acyltransferase compare
RR42_RS36305 -0.9 -1.9 TetR family transcriptional regulator compare
RR42_RS14200 -0.9 -2.5 membrane protein compare
RR42_RS06875 -0.9 -0.9 hypothetical protein compare
RR42_RS12305 -0.9 -1.0 hypothetical protein compare
RR42_RS32600 -0.9 -1.9 cytochrome O ubiquinol oxidase subunit II compare
RR42_RS04060 -0.9 -2.2 hypothetical protein compare
RR42_RS27950 -0.9 -2.5 peptidylprolyl isomerase compare
RR42_RS19795 -0.9 -1.9 GntR family transcriptional regulator compare
RR42_RS36400 -0.9 -1.0 hypothetical protein compare
RR42_RS26895 -0.9 -4.1 3-methylcrotonyl-CoA carboxylase compare
RR42_RS07125 -0.9 -1.5 hypothetical protein compare
RR42_RS32670 -0.9 -1.1 phenol hydroxylase compare
RR42_RS26580 -0.9 -1.3 hypothetical protein compare
RR42_RS21720 -0.8 -1.6 acetoin catabolism protein X compare
RR42_RS14500 -0.8 -3.9 SAM-dependent methyltransferase compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source D-Gluconic Acid sodium salt in Cupriavidus basilensis FW507-4G11

For carbon source D-Gluconic Acid sodium salt across organisms