Experiment set2IT060 for Cupriavidus basilensis FW507-4G11

Compare to:

D-Gluconic Acid sodium salt carbon source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS17805 +1.6 2.2 hypothetical protein compare
RR42_RS23140 +1.5 2.0 peptidylprolyl isomerase compare
RR42_RS25650 +1.4 2.8 hypothetical protein compare
RR42_RS19485 +1.3 1.9 general secretion pathway protein GspH compare
RR42_RS35725 +1.3 2.6 flagellar biosynthesis protein FlgB compare
RR42_RS08030 +1.3 1.9 hypothetical protein compare
RR42_RS23595 +1.1 2.6 dTDP-4-dehydrorhamnose 3,5-epimerase compare
RR42_RS07140 +1.1 2.2 hypothetical protein compare
RR42_RS32710 +1.0 2.3 hypothetical protein compare
RR42_RS25510 +1.0 2.3 short-chain dehydrogenase compare
RR42_RS12240 +1.0 1.9 hypothetical protein compare
RR42_RS33695 +1.0 2.6 membrane protein compare
RR42_RS08185 +1.0 1.7 hypothetical protein compare
RR42_RS13730 +1.0 2.7 TetR family transcriptional regulator compare
RR42_RS33485 +1.0 2.8 Fe-S oxidoreductase compare
RR42_RS27120 +1.0 1.5 amino acid ABC transporter permease compare
RR42_RS34535 +0.9 1.6 membrane protein compare
RR42_RS03525 +0.9 1.8 type VI secretion system effector compare
RR42_RS09085 +0.9 1.3 C4-dicarboxylate ABC transporter permease compare
RR42_RS33690 +0.9 1.7 phosphate acetyltransferase compare
RR42_RS21765 +0.9 3.5 3-oxoacyl-ACP reductase compare
RR42_RS13685 +0.9 2.3 cupin compare
RR42_RS06250 +0.8 1.9 dihydrodipicolinate synthase compare
RR42_RS15245 +0.8 2.4 alpha/beta hydrolase compare
RR42_RS21175 +0.8 2.5 transporter compare
RR42_RS08470 +0.8 1.4 hypothetical protein compare
RR42_RS19045 +0.8 1.3 frataxin compare
RR42_RS24550 +0.8 1.6 hypothetical protein compare
RR42_RS10855 +0.8 1.0 diguanylate phosphodiesterase compare
RR42_RS27470 +0.8 1.1 peroxiredoxin OsmC compare
RR42_RS07200 +0.8 2.0 hypothetical protein compare
RR42_RS03980 +0.8 2.4 Fis family transcriptional regulator compare
RR42_RS16565 +0.8 1.3 hypothetical protein compare
RR42_RS10675 +0.8 2.3 hypothetical protein compare
RR42_RS31995 +0.7 2.5 flavin reductase compare
RR42_RS06720 +0.7 2.3 hypothetical protein compare
RR42_RS24500 +0.7 4.5 hypothetical protein compare
RR42_RS16460 +0.7 1.6 cupin compare
RR42_RS16360 +0.7 1.5 transposase compare
RR42_RS36795 +0.7 2.2 fumarate hydratase compare
RR42_RS04180 +0.7 1.5 methyltransferase compare
RR42_RS21605 +0.7 1.5 S-adenosylhomocysteine hydrolase compare
RR42_RS07150 +0.7 1.0 hypothetical protein compare
RR42_RS06445 +0.7 2.3 NAD(P)H-quinone oxidoreductase compare
RR42_RS10490 +0.7 2.1 DNA-binding protein compare
RR42_RS21470 +0.7 0.7 hypothetical protein compare
RR42_RS36245 +0.7 2.3 excisionase compare
RR42_RS21325 +0.7 2.7 ethanolamine ammonia-lyase compare
RR42_RS03635 +0.7 1.9 trypsin-like serine protease compare
RR42_RS32945 +0.7 3.8 hypothetical protein compare
RR42_RS35190 +0.7 4.2 LacI family transcriptional regulator compare
RR42_RS34610 +0.7 2.0 hydroxyacid dehydrogenase compare
RR42_RS04735 +0.7 1.2 hypothetical protein compare
RR42_RS28400 +0.7 1.4 CoA-transferase compare
RR42_RS28005 +0.7 0.6 phosphonate/organophosphate ester transporter subunit compare
RR42_RS07920 +0.7 1.3 cyclophilin-like superfamily protein compare
RR42_RS05905 +0.7 1.5 hypothetical protein compare
RR42_RS05750 +0.7 1.1 fructose 2,6-bisphosphatase compare
RR42_RS17595 +0.7 0.8 hypothetical protein compare
RR42_RS23110 +0.6 1.2 isochorismatase compare
RR42_RS23220 +0.6 2.4 MarR family transcriptional regulator compare
RR42_RS27705 +0.6 2.0 NAD-dependent deacetylase compare
RR42_RS15845 +0.6 1.9 biotin transporter BioY compare
RR42_RS35900 +0.6 2.6 hypothetical protein compare
RR42_RS05030 +0.6 2.4 hypothetical protein compare
RR42_RS04050 +0.6 2.4 Crp/Fnr family transcriptional regulator compare
RR42_RS37110 +0.6 1.8 hypothetical protein compare
RR42_RS11655 +0.6 1.3 heat-shock protein Hsp20 compare
RR42_RS01705 +0.6 1.5 Fis family transcriptional regulator compare
RR42_RS23250 +0.6 2.0 glyoxalase compare
RR42_RS00975 +0.6 2.2 MBL fold metallo-hydrolase compare
RR42_RS06740 +0.6 2.2 hypothetical protein compare
RR42_RS02545 +0.6 1.7 nitrate ABC transporter ATP-binding protein compare
RR42_RS05755 +0.6 1.1 enoyl-CoA hydratase compare
RR42_RS09310 +0.6 1.0 IclR family transcriptional regulator compare
RR42_RS26265 +0.6 0.9 hypothetical protein compare
RR42_RS22965 +0.6 2.1 3-oxoadipate CoA-transferase compare
RR42_RS26080 +0.6 0.7 hypothetical protein compare
RR42_RS02225 +0.6 2.5 ABC transporter substrate-binding protein compare
RR42_RS00990 +0.6 2.5 GntR family transcriptional regulator compare
RR42_RS01320 +0.6 2.5 ATPase AAA compare
RR42_RS26950 +0.6 2.0 bacterioferritin compare
RR42_RS12020 +0.6 1.3 GCN5 family acetyltransferase compare
RR42_RS18395 +0.6 1.7 hypothetical protein compare
RR42_RS20630 +0.6 2.3 transcriptional regulator compare
RR42_RS25225 +0.6 1.2 NAD(P) transhydrogenase compare
RR42_RS05220 +0.6 3.4 aromatic-ring-hydroxylating dioxygenase compare
RR42_RS06415 +0.6 2.0 glyoxalase compare
RR42_RS08220 +0.6 1.2 hypothetical protein compare
RR42_RS11200 +0.6 3.1 XRE family transcriptional regulator compare
RR42_RS27320 +0.6 1.3 ferredoxin compare
RR42_RS00960 +0.6 1.8 prolyl-tRNA synthetase compare
RR42_RS12085 +0.6 1.7 glyoxalase compare
RR42_RS28190 +0.6 2.3 MerR family transcriptional regulator compare
RR42_RS31425 +0.6 0.7 chloroperoxidase compare
RR42_RS27765 +0.6 2.6 haloacid dehalogenase compare
RR42_RS26455 +0.6 0.8 amino acid ABC transporter ATP-binding protein compare
RR42_RS33825 +0.6 1.6 LysR family transcriptional regulator compare
RR42_RS08620 +0.6 2.0 membrane protein compare
RR42_RS03545 +0.6 1.9 hypothetical protein compare
RR42_RS32775 +0.6 1.4 hypothetical protein compare
RR42_RS14395 +0.6 0.8 entericidin compare
RR42_RS34565 +0.6 1.5 GDP-mannose mannosyl hydrolase compare
RR42_RS04000 +0.6 1.8 (2Fe-2S)-binding protein compare
RR42_RS00440 +0.6 1.0 hypothetical protein compare
RR42_RS05700 +0.5 3.3 hypothetical protein compare
RR42_RS15985 +0.5 1.7 formate dehydrogenase compare
RR42_RS17990 +0.5 3.1 methyltransferase compare
RR42_RS33035 +0.5 1.9 type IV secretion protein Rhs compare
RR42_RS14985 +0.5 1.0 30S ribosomal protein S21 compare
RR42_RS13420 +0.5 1.6 phosphohistidine phosphatase compare
RR42_RS21955 +0.5 1.0 hypothetical protein compare
RR42_RS29630 +0.5 2.1 hypothetical protein compare
RR42_RS33175 +0.5 2.6 membrane protein compare
RR42_RS16470 +0.5 3.1 transcriptional regulator compare
RR42_RS03035 +0.5 0.6 membrane protein compare
RR42_RS12430 +0.5 1.1 LysR family transcriptional regulator compare
RR42_RS22570 +0.5 1.4 SAM-dependent methyltransferase compare
RR42_RS07825 +0.5 1.8 D-amino acid oxidase compare
RR42_RS08260 +0.5 1.0 hypothetical protein compare
RR42_RS33970 +0.5 2.4 LysR family transcriptional regulator compare
RR42_RS25640 +0.5 1.1 3-hydroxyisobutyrate dehydrogenase compare
RR42_RS36010 +0.5 1.5 peptidase compare
RR42_RS14820 +0.5 1.6 hypothetical protein compare
RR42_RS07295 +0.5 1.2 LysR family transcriptional regulator compare
RR42_RS19480 +0.5 2.6 secretion system protein G compare
RR42_RS24795 +0.5 1.5 butyryl-CoA dehydrogenase compare
RR42_RS16710 +0.5 3.5 endoribonuclease L-PSP compare
RR42_RS19490 +0.5 1.6 general secretion pathway protein GspI compare
RR42_RS07040 +0.5 2.0 hypothetical protein compare
RR42_RS05945 +0.5 0.9 thioredoxin compare
RR42_RS09075 +0.5 2.6 amino acid dehydrogenase compare
RR42_RS15080 +0.5 1.1 GntR family transcriptional regulator compare
RR42_RS34525 +0.5 1.8 type VI secretion protein VasK compare
RR42_RS37055 +0.5 1.6 hypothetical protein compare
RR42_RS01100 +0.5 1.2 LysR family transcriptional regulator compare
RR42_RS06880 +0.5 0.8 hypothetical protein compare
RR42_RS28970 +0.5 1.9 3-oxoacyl-ACP reductase compare
RR42_RS23690 +0.5 1.2 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase compare
RR42_RS17340 +0.5 1.8 glutathione peroxidase compare
RR42_RS15225 +0.5 0.9 RNA-binding protein compare
RR42_RS09375 +0.5 0.7 taurine dioxygenase compare
RR42_RS13825 +0.5 1.8 hypothetical protein compare
RR42_RS02120 +0.5 2.2 glutamine amidotransferase compare
RR42_RS36770 +0.5 2.7 hypothetical protein compare
RR42_RS23305 +0.5 0.8 hypothetical protein compare
RR42_RS27125 +0.5 1.7 polar amino acid ABC transporter permease compare
RR42_RS33160 +0.5 2.3 nitrogen fixation protein NifQ compare
RR42_RS17260 +0.5 2.8 ABC transporter ATP-binding protein compare
RR42_RS27440 +0.5 1.6 hypothetical protein compare
RR42_RS31135 +0.5 1.8 hypothetical protein compare
RR42_RS27825 +0.5 2.1 4-hydroxyphenylacetate isomerase compare
RR42_RS13465 +0.5 1.7 phosphate transporter permease subunit PstC compare
RR42_RS25400 +0.5 1.9 MarR family transcriptional regulator compare
RR42_RS08865 +0.5 1.4 hydroxylase compare
RR42_RS25970 +0.5 2.3 acyl-CoA dehydrogenase compare
RR42_RS31830 +0.5 0.9 short-chain dehydrogenase compare
RR42_RS20370 +0.5 0.7 pterin-4-alpha-carbinolamine dehydratase compare
RR42_RS11635 +0.5 1.5 signal transduction protein compare
RR42_RS34685 +0.5 1.7 catechol 1,2-dioxygenase compare
RR42_RS15600 +0.5 2.4 glutathione S-transferase compare
RR42_RS12880 +0.5 1.5 membrane protein compare
RR42_RS20040 +0.5 3.0 transcriptional regulator compare
RR42_RS32960 +0.5 0.9 2-dehydropantoate 2-reductase compare
RR42_RS28610 +0.5 2.2 acyl-CoA dehydrogenase compare
RR42_RS01535 +0.5 1.8 3-isopropylmalate dehydratase compare
RR42_RS17830 +0.5 2.8 ABC transporter substrate-binding protein compare
RR42_RS18505 +0.5 2.4 saccharopine dehydrogenase compare
RR42_RS03840 +0.5 2.1 molybdate ABC transporter substrate-binding protein compare
RR42_RS34945 +0.5 1.1 bb3-type cytochrome oxidase subunit III compare
RR42_RS25115 +0.5 2.0 IclR family transcriptional regulator compare
RR42_RS36405 +0.5 1.6 LuxR family transcriptional regulator compare
RR42_RS05885 +0.5 2.7 hypothetical protein compare
RR42_RS16185 +0.5 1.8 malonyl-CoA decarboxylase compare
RR42_RS12570 +0.5 2.9 peptidase P60 compare
RR42_RS34570 +0.5 1.0 hypothetical protein compare
RR42_RS27850 +0.5 2.1 2-oxo-hepta-3-ene-1,7-dioate hydratase compare
RR42_RS36495 +0.5 1.8 enoyl-CoA hydratase compare
RR42_RS25755 +0.5 1.4 IclR family transcriptional regulator compare
RR42_RS07515 +0.5 2.0 transcriptional regulator compare
RR42_RS29505 +0.5 1.8 hypothetical protein compare
RR42_RS36025 +0.5 1.5 hemagglutinin compare
RR42_RS29090 +0.5 2.9 galactarate dehydrogenase compare
RR42_RS26340 +0.5 1.5 metallophosphoesterase compare
RR42_RS22070 +0.5 1.1 type IV secretion protein Rhs compare
RR42_RS33540 +0.5 1.6 adenylylsulfate kinase compare
RR42_RS36610 +0.5 1.1 host specificity protein compare
RR42_RS08550 +0.5 1.2 tail fiber protein compare
RR42_RS06890 +0.5 0.7 hypothetical protein compare
RR42_RS19840 +0.4 1.7 amidohydrolase compare
RR42_RS24950 +0.4 1.3 TetR family transcriptional regulator compare
RR42_RS27755 +0.4 1.7 rhombosortase compare
RR42_RS05115 +0.4 1.1 LysR family transcriptional regulator compare
RR42_RS25965 +0.4 2.1 LuxR family transcriptional regulator compare
RR42_RS20115 +0.4 2.0 antitoxin compare
RR42_RS08130 +0.4 1.7 hypothetical protein compare
RR42_RS12450 +0.4 1.1 hypothetical protein compare
RR42_RS09300 +0.4 0.7 aromatic ring-opening dioxygenase LigB compare
RR42_RS18045 +0.4 2.0 peroxiredoxin compare
RR42_RS17425 +0.4 3.2 chemotaxis protein CheY compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source D-Gluconic Acid sodium salt in Cupriavidus basilensis FW507-4G11

For carbon source D-Gluconic Acid sodium salt across organisms