Experiment set2IT060 for Bifidobacterium breve UCC2003

Compare to:

CDM1 without Proline

200 most important genes:

  gene name fitness t score description  
BBR_RS10660 -7.3 -32.8 esterase compare
BBR_RS18735 -7.2 -19.4 hypothetical protein compare
BBR_RS13040 -6.9 -4.7 CHAP domain-containing protein compare
BBR_RS13030 -6.8 -4.7 cell division ATP-binding protein FtsE compare
BBR_RS10445 -6.7 -14.3 HlyC/CorC family transporter compare
BBR_RS19700 -6.5 -25.1 ATP-dependent chaperone ClpB compare
BBR_RS19240 -6.4 -17.2 LacI family transcriptional regulator compare
BBR_RS11025 -6.4 -19.4 aspartate-semialdehyde dehydrogenase compare
BBR_RS11020 -6.4 -14.3 ACT domain-containing protein compare
BBR_RS18570 -6.4 -10.6 phosphoserine transaminase compare
BBR_RS18955 -6.2 -13.3 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
BBR_RS19475 -6.2 -18.4 AEC family transporter compare
BBR_RS17990 -6.1 -11.8 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase compare
BBR_RS19445 -6.1 -25.9 glutamate 5-kinase compare
BBR_RS17375 -6.1 -5.9 amino acid ABC transporter ATP-binding protein compare
BBR_RS13035 -6.1 -3.6 ABC transporter permease compare
BBR_RS11015 -6.1 -15.2 aspartate kinase compare
BBR_RS16750 -6.1 -9.0 ParA family protein compare
BBR_RS18690 -6.0 -4.2 diacylglycerol kinase compare
BBR_RS11720 -6.0 -8.3 DUF2469 domain-containing protein compare
BBR_RS14365 -5.9 -7.0 hypothetical protein compare
BBR_RS19535 -5.8 -14.1 homoserine kinase (EC 2.7.1.39) (from data) compare
BBR_RS17370 -5.7 -7.8 ABC transporter substrate-binding protein compare
BBR_RS14210 -5.7 -3.3 hypothetical protein compare
BBR_RS11205 -5.6 -3.7 HPr family phosphocarrier protein compare
BBR_RS14075 -5.6 -6.6 glutamate-5-semialdehyde dehydrogenase compare
BBR_RS17615 -5.5 -11.2 phosphoserine phosphatase SerB compare
BBR_RS17365 -5.5 -6.5 ABC transporter permease compare
BBR_RS12235 -5.5 -1.5 hypothetical protein compare
BBR_RS19355 -5.5 -2.5 tRNA-Gly compare
BBR_RS15675 -5.4 -6.5 ADP-forming succinate--CoA ligase subunit beta compare
BBR_RS11505 -5.4 -23.4 TetR/AcrR family transcriptional regulator compare
BBR_RS18695 -5.4 -3.7 PRD domain-containing protein compare
BBR_RS16970 -5.4 -7.4 phosphoglycerate dehydrogenase compare
BBR_RS10900 -5.4 -3.7 molecular chaperone DnaK compare
BBR_RS12460 -5.4 -7.4 LacI family DNA-binding transcriptional regulator compare
BBR_RS15680 -5.3 -6.3 succinate--CoA ligase subunit alpha compare
BBR_RS14215 -5.2 -5.2 peptidase compare
BBR_RS14625 -5.2 -3.6 pyrroline-5-carboxylate reductase compare
BBR_RS13735 -5.2 -1.4 Lon protease compare
BBR_RS15170 -5.2 -7.1 HlyC/CorC family transporter compare
BBR_RS20930 -5.2 -2.3 hypothetical protein compare
BBR_RS17460 -5.1 -11.3 TPM domain-containing protein compare
BBR_RS16820 -5.0 -4.2 RNA polymerase sigma factor RpoE compare
BBR_RS11210 -5.0 -4.9 phosphoenolpyruvate--protein phosphotransferase compare
BBR_RS16610 -5.0 -4.8 hypothetical protein compare
BBR_RS11540 -4.9 -3.5 DUF1727 domain-containing protein compare
BBR_RS16675 -4.8 -3.3 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS19905 -4.8 -1.3 methionine--tRNA ligase compare
BBR_RS19270 -4.8 -1.3 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase compare
BBR_RS14070 -4.8 -3.3 threonine synthase (EC 4.2.3.1) (from data) compare
BBR_RS19740 -4.7 -20.8 DUF2142 domain-containing protein compare
BBR_RS17135 -4.7 -2.5 RluA family pseudouridine synthase compare
BBR_RS10625 -4.6 -2.5 FHA domain-containing protein compare
BBR_RS19945 -4.6 -12.1 MarR family transcriptional regulator compare
BBR_RS12995 -4.6 -10.3 4-hydroxy-tetrahydrodipicolinate synthase compare
BBR_RS20910 -4.6 -2.1 DUF1829 domain-containing protein compare
BBR_RS12770 -4.6 -4.4 hypothetical protein compare
BBR_RS10555 -4.5 -2.4 DUF3073 domain-containing protein compare
BBR_RS16600 -4.4 -12.9 aconitate hydratase AcnA compare
BBR_RS16155 -4.4 -11.6 isocitrate dehydrogenase (NADP(+)) compare
BBR_RS16425 -4.4 -3.8 DUF3071 domain-containing protein compare
BBR_RS18725 -4.3 -5.4 ribonuclease HI compare
BBR_RS20465 -4.3 -14.1 chromosome partitioning protein compare
BBR_RS15085 -4.3 -2.0 3-dehydroquinate synthase compare
BBR_RS19165 -4.3 -3.7 phosphate ABC transporter substrate-binding protein PstS compare
BBR_RS12900 -4.3 -2.9 DeoR/GlpR transcriptional regulator compare
BBR_RS19265 -4.2 -14.7 pyrrolidone-carboxylate peptidase compare
BBR_RS19760 -4.2 -3.0 polysaccharide ABC transporter ATPase compare
BBR_RS15070 -4.2 -2.9 endolytic transglycosylase MltG compare
BBR_RS19470 -4.1 -24.5 succinyl-diaminopimelate desuccinylase compare
BBR_RS12905 -4.1 -3.4 galactose-1-phosphate uridylyltransferase compare
BBR_RS19190 -4.1 -7.9 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS12660 -4.1 -11.5 EpsG family protein compare
BBR_RS15180 -4.1 -8.7 long-chain fatty acid--CoA ligase compare
BBR_RS13820 -4.1 -1.1 ATP-binding protein compare
BBR_RS20795 -4.1 -1.6 cystathionine gamma-lyase compare
BBR_RS20430 -4.0 -7.7 hypothetical protein compare
BBR_RS16965 -4.0 -2.8 ATP-dependent DNA helicase compare
BBR_RS11595 -4.0 -6.3 50S ribosomal protein L9 compare
BBR_RS17290 -4.0 -8.9 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS19555 -4.0 -27.2 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
BBR_RS11515 -3.9 -19.4 ammonium transporter compare
BBR_RS15080 -3.9 -2.7 chorismate synthase compare
BBR_RS18700 -3.8 -9.4 PTS beta-glucoside transporter subunit EIIBCA compare
BBR_RS19120 -3.8 -12.7 helicase compare
BBR_RS12760 -3.8 -9.8 hypothetical protein compare
BBR_RS14260 -3.7 -1.4 ABC transporter ATP-binding protein compare
BBR_RS19160 -3.7 -1.4 phosphate ABC transporter permease subunit PstC compare
BBR_RS10620 -3.7 -6.1 phosphoprotein phosphatase compare
BBR_RS15300 -3.6 -7.0 peroxiredoxin compare
BBR_RS12545 -3.6 -3.5 DUF4012 domain-containing protein compare
BBR_RS13700 -3.6 -11.6 diaminopimelate epimerase compare
BBR_RS15520 -3.6 -2.5 shikimate 5-dehydrogenase compare
BBR_RS14655 -3.6 -7.4 AraC family transcriptional regulator compare
BBR_RS17905 -3.6 -23.5 2-hydroxyglutaryl-CoA dehydratase activator compare
BBR_RS10910 -3.6 -15.1 molecular chaperone DnaJ compare
BBR_RS16540 -3.5 -4.5 XRE family transcriptional regulator compare
BBR_RS13740 -3.5 -5.4 DUF3052 domain-containing protein compare
BBR_RS16605 -3.4 -9.7 hypothetical protein compare
BBR_RS18745 -3.4 -1.8 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS14370 -3.4 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS17360 -3.4 -6.3 amino acid ABC transporter permease compare
BBR_RS19540 -3.4 -2.3 homoserine dehydrogenase compare
BBR_RS13420 -3.4 -3.3 DUF4230 domain-containing protein compare
BBR_RS11355 -3.4 -7.6 hypothetical protein compare
BBR_RS11220 -3.3 -14.5 YbhB/YbcL family Raf kinase inhibitor-like protein compare
BBR_RS19055 -3.3 -1.9 ferredoxin family protein compare
BBR_RS11680 -3.3 -14.8 23S rRNA methyltransferase compare
BBR_RS16940 -3.3 -3.8 hypothetical protein compare
BBR_RS19125 -3.2 -12.6 hypothetical protein compare
BBR_RS11500 -3.2 -10.5 glycosyltransferase family 2 protein compare
BBR_RS14205 -3.2 -3.8 hypothetical protein compare
BBR_RS19375 -3.1 -1.7 acyl-CoA carboxylase subunit beta compare
BBR_RS16430 -3.1 -2.9 nucleotide pyrophosphatase compare
BBR_RS12635 -3.1 -15.7 polysaccharide biosynthesis protein compare
BBR_RS12640 -3.1 -13.8 glycosyl transferase compare
BBR_RS12705 -3.1 -11.9 hypothetical protein compare
BBR_RS14230 -3.1 -8.9 HAMP domain-containing histidine kinase compare
BBR_RS15330 -3.0 -3.7 hypothetical protein compare
BBR_RS19755 -3.0 -13.3 glycosyl transferase compare
BBR_RS20920 -3.0 -4.6 hypothetical protein compare
BBR_RS19155 -3.0 -8.8 phosphate ABC transporter, permease protein PstA compare
BBR_RS20450 -3.0 -16.6 murein biosynthesis integral membrane protein MurJ compare
BBR_RS16275 -3.0 -1.1 leucine--tRNA ligase compare
BBR_RS14280 -3.0 -1.5 dephospho-CoA kinase compare
BBR_RS10720 -2.9 -14.4 PDZ domain-containing protein compare
BBR_RS19370 -2.9 -3.5 type I polyketide synthase compare
BBR_RS12810 -2.9 -9.7 hypothetical protein compare
BBR_RS14265 -2.9 -5.8 Solute-binding protein of ABC transporter system for metals compare
BBR_RS15090 -2.8 -1.1 type II 3-dehydroquinate dehydratase compare
BBR_RS12700 -2.8 -7.8 hypothetical protein compare
BBR_RS13455 -2.8 -3.5 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS16975 -2.7 -5.6 transcriptional repressor NrdR compare
BBR_RS14330 -2.7 -1.9 glycogen debranching enzyme GlgX compare
BBR_RS20800 -2.7 -1.3 hypothetical protein compare
BBR_RS16905 -2.7 -3.9 hypothetical protein compare
BBR_RS15845 -2.6 -1.0 hypothetical protein compare
BBR_RS20935 -2.6 -2.5 hypothetical protein compare
BBR_RS12645 -2.6 -6.7 acyltransferase compare
BBR_RS12630 -2.6 -13.4 glycosyltransferase family 1 protein compare
BBR_RS18550 -2.6 -9.7 universal stress protein compare
BBR_RS18565 -2.6 -2.1 CHAP domain-containing protein compare
BBR_RS13370 -2.6 -3.0 phosphoribosylamine--glycine ligase compare
BBR_RS14665 -2.6 -7.6 MATE family efflux transporter compare
BBR_RS12375 -2.5 -1.6 pantetheine-phosphate adenylyltransferase compare
BBR_RS19645 -2.5 -9.2 RNA degradosome polyphosphate kinase compare
BBR_RS13750 -2.5 -2.4 DivIVA domain-containing protein compare
BBR_RS18215 -2.5 -8.2 AI-2E family transporter compare
BBR_RS13215 -2.5 -1.7 hypothetical protein compare
BBR_RS16445 -2.4 -4.6 hypothetical protein compare
BBR_RS17455 -2.4 -5.8 DNA-binding response regulator compare
BBR_RS13450 -2.4 -2.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS20455 -2.3 -8.7 thioredoxin-disulfide reductase compare
BBR_RS12980 -2.3 -12.4 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS20925 -2.3 -1.2 amino acid permease compare
BBR_RS15455 -2.3 -1.4 orotate phosphoribosyltransferase compare
BBR_RS20420 -2.3 -9.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
BBR_RS13125 -2.3 -1.7 ABC transporter permease compare
BBR_RS13835 -2.3 -6.9 FAD-dependent oxidoreductase compare
BBR_RS17510 -2.3 -7.0 VWA domain-containing protein compare
BBR_RS16035 -2.2 -3.3 hypothetical protein compare
BBR_RS15860 -2.2 -0.9 DUF2316 domain-containing protein compare
BBR_RS12775 -2.2 -5.8 hypothetical protein compare
BBR_RS17720 -2.2 -9.4 CRISPR-associated helicase/endonuclease Cas3 compare
BBR_RS13805 -2.2 -2.2 hypothetical protein compare
BBR_RS17495 -2.2 -9.0 DUF58 domain-containing protein compare
BBR_RS13070 -2.2 -1.4 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS11770 -2.2 -4.4 chorismate mutase compare
BBR_RS15805 -2.2 -5.4 prolipoprotein diacylglyceryl transferase compare
BBR_RS14885 -2.2 -4.0 cyclomaltodextrinase compare
BBR_RS16240 -2.2 -4.0 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD compare
BBR_RS16670 -2.1 -3.4 hypothetical protein compare
BBR_RS18050 -2.1 -2.3 threonylcarbamoyl-AMP synthase compare
BBR_RS19050 -2.1 -14.1 succinyldiaminopimelate transaminase compare
BBR_RS18375 -2.1 -9.2 ATP-dependent helicase compare
BBR_RS10905 -2.0 -2.9 nucleotide exchange factor GrpE compare
BBR_RS20775 -2.0 -1.5 DUF4230 domain-containing protein compare
BBR_RS19260 -2.0 -13.2 hypothetical protein compare
BBR_RS12835 -2.0 -4.3 thioredoxin compare
BBR_RS20725 -2.0 -4.0 hypothetical protein compare
BBR_RS19095 -2.0 -8.3 magnesium transporter compare
BBR_RS12355 -2.0 -4.1 ribonuclease III compare
BBR_RS16555 -2.0 -0.8 DNA translocase FtsK compare
BBR_RS12365 -2.0 -6.4 DUF177 domain-containing protein compare
BBR_RS12650 -2.0 -8.2 polysaccharide pyruvyl transferase family protein compare
BBR_RS16245 -2.0 -2.0 ribosomal-protein-alanine N-acetyltransferase compare
BBR_RS12175 -2.0 -6.7 TetR/AcrR family transcriptional regulator compare
BBR_RS12855 -2.0 -3.8 glycine cleavage system protein H compare
BBR_RS13375 -1.9 -5.7 phosphoribosylformylglycinamidine cyclo-ligase compare
BBR_RS10755 -1.9 -5.5 adenylosuccinate synthase compare
BBR_RS14190 -1.9 -8.0 transcriptional regulator compare
BBR_RS19105 -1.9 -6.1 FmdB family transcriptional regulator compare
BBR_RS12655 -1.9 -7.7 glycosyltransferase family 2 protein compare
BBR_RS17505 -1.9 -9.2 VWA domain-containing protein compare
BBR_RS15850 -1.9 -2.7 ASCH domain-containing protein compare
BBR_RS15130 -1.9 -1.3 metal-sulfur cluster assembly factor compare
BBR_RS19745 -1.9 -12.3 LTA synthase family protein compare
BBR_RS13770 -1.8 -2.6 DNA repair protein RecO compare
BBR_RS16255 -1.8 -2.5 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in nutrient dropout experiments

For nutrient dropout no Proline across organisms