Experiment set2IT059 for Sinorhizobium meliloti 1021

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
SMc02115 -3.9 -1.3 hypothetical protein compare
SMc00334 -3.6 -2.7 cytidylate kinase compare
SMc03967 -3.6 -2.0 Holliday junction resolvase compare
SMc01845 -3.5 -3.2 transglycosylase transmembrane protein compare
SMc02858 -3.5 -1.1 chaperone protein DnaJ compare
SMc02144 -3.5 -6.0 phosphate ABC transporter permease compare
SMc02114 -3.4 -5.4 hypothetical protein compare
SMc01880 -3.2 -3.7 pantoate--beta-alanine ligase compare
SMc02753 -3.1 -1.7 PTS system transporter subunit IIA compare
SMc02451 -3.1 -1.7 hypothetical protein compare
SMc02142 -3.0 -6.5 phosphate transporter ATP-binding protein compare
SMc02833 -2.9 -2.1 penicillin-insensitive murein endopeptidase compare
SMc02147 -2.9 -6.2 phosphate regulon sensor histidine kinase transmembrane protein compare
SMc00492 -2.9 -1.3 hypothetical protein compare
SMc02505 -2.9 -1.7 hypothetical protein compare
SMc02850 -2.8 -5.4 DNA polymerase I compare
SMc01881 -2.8 -4.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc03763 -2.8 -3.7 cytosine-specific methyltransferase compare
SMc02232 -2.7 -3.3 hypothetical protein compare
SMc02867 -2.7 -4.4 multidrug-efflux system transmembrane protein compare
SMc02909 -2.7 -2.3 transglycosylase transmembrane protein compare
SMa0789 -2.7 -5.2 GntR family transcriptional regulator compare
SMc00619 -2.6 -2.7 hypothetical protein compare
SMc02140 -2.5 -1.9 phosphate regulon transcriptional regulatory protein compare
SMc01208 -2.5 -3.9 peptidyl-prolyl cis-trans isomerase B protein compare
SMc02145 -2.4 -1.1 signal peptide protein compare
SMc01187 -2.4 -2.7 rare lipoprotein A compare
SMc02510 -2.4 -1.1 ferric uptake regulation protein compare
SMc01147 -2.3 -4.2 coproporphyrinogen III oxidase compare
SMc02683 -2.2 -2.5 hypothetical protein compare
SMc02102 -2.2 -5.2 hypothetical protein compare
SMc00963 -2.1 -6.8 hypothetical protein compare
SMc02107 -2.1 -1.5 hypothetical protein compare
SMc02234 -2.0 -2.7 hypothetical protein compare
SMc01438 -2.0 -6.4 protease precursor signal peptide protein compare
SMc02778 -1.9 -1.2 hydroxyacid aldolase compare
SMc03181 -1.9 -9.5 monovalent cation/H+ antiporter subunit D compare
SMc04330 -1.9 -2.5 trimethylamine methyltransferase compare
SMc01579 -1.9 -1.3 hypothetical protein compare
SMc00914 -1.9 -4.5 oxidoreductase compare
SMc00802 -1.9 -1.0 hypothetical protein compare
SMc02901 -1.8 -1.0 hypothetical protein compare
SMc04121 -1.8 -2.3 uracil phosphoribosyltransferase compare
SMc00580 -1.8 -3.3 4-hydroxythreonine-4-phosphate dehydrogenase compare
SMc01850 -1.8 -2.8 hypothetical protein compare
SMc00053 -1.8 -1.1 monovalent cation/H+ antiporter subunit C compare
SMc00067 -1.8 -6.9 outer-membranne lipoprotein compare
SMc02484 -1.8 -3.9 amino acid efflux transmembrane protein compare
SMc00013 -1.8 -2.1 cytochrome C oxidase subunit III transmembrane protein compare
SMc02435 -1.7 -2.6 methyltransferase compare
SMa0144 -1.7 -1.1 hypothetical protein compare
SMc02485 -1.7 -2.1 signal peptide protein compare
SMc02143 -1.7 -2.7 phosphate ABC transporter permease compare
SMc02363 -1.7 -3.3 cytochrome C-type biogenesis transmembrane protein compare
SM_b20758 -1.6 -2.8 ArsR family transcriptional regulator compare
SMc02077 -1.6 -3.3 exodeoxyribonuclease III protein compare
SMc01929 -1.6 -3.0 hypothetical protein compare
SMc03179 -1.5 -9.2 monovalent cation/H+ antiporter subunit A compare
SMc01361 -1.5 -4.8 dihydroorotase compare
SMc02149 -1.5 -1.4 hypothetical protein compare
SMc00650 -1.5 -1.9 hypothetical protein compare
SMc02495 -1.5 -1.5 translaldolase compare
SMc02827 -1.4 -2.9 hypothetical protein compare
SMc03773 -1.4 -5.0 hypothetical protein compare
SMc01183 -1.4 -0.8 LexA repressor compare
SMc02582 -1.4 -3.4 hypothetical protein compare
SMc01342 -1.4 -4.6 hypothetical protein compare
SM_b22005 -1.4 -1.5 hypothetical protein compare
SMc02707 -1.4 -2.9 hypothetical protein compare
SMc00088 -1.4 -1.5 hypothetical protein compare
SMc02071 -1.4 -3.2 hydrolase glycosidase compare
SMc00987 -1.3 -2.5 hypothetical protein compare
SMc02266 -1.3 -1.7 hypothetical protein compare
SMc03182 -1.3 -4.7 pH adaptation potassium efflux system E transmembrane protein compare
SM_b21523 -1.3 -2.6 cell division inhibitor protein compare
SMc01974 -1.3 -2.1 transcriptional regulator compare
SMc00579 -1.3 -4.3 dimethyladenosine transferase compare
SMc03180 -1.3 -4.7 monovalent cation/H+ antiporter subunit C compare
SMc03746 -1.3 -2.1 hypothetical protein compare
SMa0112 -1.3 -3.1 hypothetical protein compare
SMc02856 -1.3 -5.2 penicillin-binding protein compare
SMc01716 -1.2 -6.8 sensor histidine kinase transmembrane protein compare
SMc04296 -1.2 -0.9 cell division protein FtsZ compare
SM_b20897 -1.2 -1.5 hypothetical protein compare
SMc04174 -1.2 -1.5 signal peptide protein compare
SMc03140 -1.2 -3.7 transcriptional regulator compare
SMc00555 -1.2 -1.1 colicin V production transmembrane protein compare
SMc03774 -1.2 -2.4 hypothetical protein compare
SM_b20450 -1.2 -8.6 regulatory protein compare
SMc02685 -1.2 -2.1 hypothetical protein compare
SMc01461 -1.2 -3.6 DNA helicase II protein compare
SMc00928 -1.2 -1.3 signal peptide protein compare
SMc02739 -1.2 -3.7 glycine betaine transport ATP-binding ABC transporter protein compare
SMa0211 -1.2 -1.3 hypothetical protein compare
SMc01969 -1.2 -6.0 hypothetical protein compare
SMa5033 -1.2 -0.9 hypothetical protein compare
SMa1413 -1.2 -2.0 hypothetical protein compare
SMa1323 -1.2 -1.5 Transcription regulator compare
SMc03889 -1.2 -2.6 transporter compare
SMc01877 -1.1 -3.8 DNA repair protein compare
SMc00667 -1.1 -2.0 hypothetical protein compare
SMc00760 -1.1 -3.6 recombinase A compare
SMc04220 -1.1 -1.2 transcriptional regulator compare
SMc00369 -1.1 -1.1 oxidoreductase compare
SMc03993 -1.1 -3.2 hypothetical protein compare
SMc03876 -1.1 -2.9 HEAT shock-like protein compare
SMc01178 -1.1 -1.2 multidrug transmembrane resistance signal peptide protein compare
SMc02861 -1.1 -1.9 phosphate transporter compare
SMc00726 -1.0 -0.6 thiol:disulfide interchange redox-active center transmembrane protein compare
SMc03878 -1.0 -2.4 acetoacetyl-CoA reductase compare
SMc03124 -1.0 -2.9 periplasmic binding ABC transporter protein compare
SMc03785 -1.0 -3.0 dinucleoside polyphosphate hydrolase compare
SMc00511 -1.0 -3.4 D-ribulose-5-phosphate 3-epimerase compare
SMc03091 -1.0 -3.9 arginase compare
SM_b21580 -1.0 -1.4 hypothetical protein compare
SMc04024 -1.0 -4.2 membrane-bound lytic murein transglycosylase compare
SMc01700 -1.0 -3.7 peptidyl-prolyl cis-trans isomerase A compare
SMc02039 -1.0 -4.0 oxidoreductase compare
SMc03184 -1.0 -1.1 PH adaptation potassium efflux system G transmembrane protein compare
SMc04168 -1.0 -1.9 hypothetical protein compare
SMc00296 -1.0 -5.1 POLY3-hydroxybutyrate polymerase compare
SMc02657 -1.0 -2.6 hypothetical protein compare
SMc01568 -1.0 -0.7 hypothetical protein compare
SMc02543 -1.0 -2.1 hypothetical protein compare
SMc01200 -1.0 -4.4 hypothetical protein compare
SMc01347 -0.9 -2.7 hypothetical protein compare
SMa0343 -0.9 -2.0 hypothetical protein compare
SMc02941 -0.9 -3.6 hypothetical protein compare
SMa0450 -0.9 -1.3 hypothetical protein compare
SMc00025 -0.9 -3.8 pyruvate phosphate dikinase compare
SMc00557 -0.9 -3.6 alanine racemase compare
SM_b22001 -0.9 -1.1 hypothetical protein compare
SM_b20595 -0.9 -2.8 cell division protein FtsK compare
SMc03060 -0.9 -4.1 transcriptional regulator compare
SMc00451 -0.9 -3.9 processing protease compare
SMc00812 -0.9 -1.5 hypothetical protein compare
SMc00556 -0.9 -3.1 DNA repair protein RadA compare
SMc00331 -0.9 -1.5 hypothetical protein compare
SMc02894 -0.9 -1.6 hypothetical protein compare
SMc00496 -0.9 -1.0 hypothetical protein compare
SMc03242 -0.9 -2.5 GTP-binding protein compare
SMc03100 -0.9 -1.4 hypothetical protein compare
SMc02474 -0.9 -2.2 ABC transporter ATP-binding protein compare
SMc00941 -0.9 -1.0 hypothetical protein compare
SMc04090 -0.8 -2.8 sun protein compare
SMc04404 -0.8 -1.1 amino acid efflux transmembrane protein compare
SM_b20876 -0.8 -2.7 hypothetical protein compare
SMc02172 -0.8 -3.5 transcriptional regulator compare
SMc01368 -0.8 -2.8 transport transmembrane protein compare
SM_b20258 -0.8 -2.5 transcriptional regulator compare
SMc02866 -0.8 -2.2 transcriptional regulator compare
SMc02069 -0.8 -3.0 hypothetical protein compare
SMa1697 -0.8 -1.3 hypothetical protein compare
SMc00689 -0.8 -2.8 lipoprotein compare
SMa1002 -0.8 -0.8 hypothetical protein compare
SM_b20823 -0.8 -4.5 cell surface saccharide synthesis protein compare
SMc01364 -0.8 -0.8 DNA topoisomerase I compare
SM_b22023 -0.8 -1.3 molecular chaperone GroES compare
SMa0736 -0.8 -2.0 hypothetical protein compare
SMc01220 -0.8 -2.3 lipopolysaccharide core biosynthesis glycosyl transferase compare
SM_b21175 -0.8 -1.7 phosphate uptake ABC transporter permease compare
SMc02978 -0.8 -2.7 hypothetical protein compare
SM_b21365 -0.8 -2.1 hypothetical protein compare
SMc01235 -0.8 -5.0 excinuclease ABC subunit A compare
SMc01260 -0.8 -2.6 transcriptional regulator compare
SM_b20822 -0.8 -3.3 cell surface polysaccharide export ABC-2 transporter permease, close relative to wzm1Y20833 compare
SMc00255 -0.8 -4.4 hypothetical protein compare
SMc01606 -0.8 -3.9 permease compare
SMc04311 -0.8 -4.2 hypothetical protein compare
SMc03046 -0.8 -2.0 transcriptional regulator compare
SMc02787 -0.7 -2.0 hypothetical protein compare
SMc03810 -0.7 -2.5 hypothetical protein compare
SM_b20509 -0.7 -1.7 transcriptional regulator compare
SM_b20998 -0.7 -4.9 hypothetical protein compare
SMa5010 -0.7 -0.8 hypothetical protein compare
SM_b20181 -0.7 -3.5 ABC transporter substrate-binding protein compare
SMc02388 -0.7 -1.5 hypothetical protein compare
SM_b20811 -0.7 -1.7 hypothetical protein compare
SM_b21480 -0.7 -0.7 hypothetical protein compare
SMc02280 -0.7 -1.2 hypothetical protein compare
SMc01337 -0.7 -0.8 hypothetical protein compare
SMc02822 -0.7 -2.0 hypothetical protein compare
SMc01360 -0.7 -1.4 aspartate carbamoyltransferase catalytic subunit compare
SMc01457 -0.7 -4.2 transport transmembrane protein compare
SMc02636 -0.7 -1.8 hypothetical protein compare
SMc00228 -0.7 -4.3 ATP-dependent DNA helicase RecG compare
SMa0638 -0.7 -1.5 hypothetical protein compare
SMc01204 -0.7 -3.6 transmembrane oxidoreductase compare
SMc04169 -0.7 -4.6 transcriptional regulator compare
SMc02425 -0.7 -1.1 transcriptional regulator compare
SMc03879 -0.7 -1.9 Acetyl-CoA acetyltransferase (EC 2.3.1.9) (from data) compare
SMc02221 -0.7 -2.2 hypothetical protein compare
SMc02979 -0.7 -2.1 hypothetical protein compare
SM_b20677 -0.7 -4.2 ureidoglycolate hydrolase compare
SMc00691 -0.7 -1.6 site-specific tyrosine recombinase XerD compare
SMc03864 -0.7 -3.3 amino acid-binding periplasmic (signal peptide) ABC transporter protein compare
SMa0349 -0.7 -0.9 hypothetical protein compare
SMc02785 -0.7 -3.1 lytic murein transglycosylase A protein compare
SMc02862 -0.7 -2.5 Pit accessory protein compare
SMc00948 -0.7 -3.8 glutamine synthetase compare


Specific Phenotypes

For 8 genes in this experiment