Experiment set2IT059 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

L-Arabinose carbon source

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS20350 +2.5 17.5 gliding motility lipoprotein GldH compare
CA265_RS08320 +2.5 17.8 DNA mismatch repair protein MutT compare
CA265_RS08325 +1.7 6.4 haloacid dehalogenase compare
CA265_RS18125 +1.7 10.5 gliding motility protein GldL compare
CA265_RS22800 +1.7 12.4 glycosyl transferase compare
CA265_RS03295 +1.5 12.0 gliding motility-associated ABC transporter substrate-binding protein GldG compare
CA265_RS22985 +1.5 13.0 helicase SNF2 compare
CA265_RS18120 +1.5 12.0 gliding motility protein GldM compare
CA265_RS18115 +1.5 11.0 gliding motility protein GldN compare
CA265_RS23155 +1.5 10.7 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
CA265_RS15070 +1.5 10.1 hypothetical protein compare
CA265_RS19030 +1.4 8.6 hypothetical protein compare
CA265_RS18225 +1.4 9.4 DNA-binding response regulator compare
CA265_RS22805 +1.4 10.6 glycosyl transferase compare
CA265_RS19940 +1.4 11.8 hypothetical protein compare
CA265_RS03260 +1.4 10.2 multidrug ABC transporter ATP-binding protein compare
CA265_RS18130 +1.4 11.6 gliding motility-associated lipoprotein compare
CA265_RS19945 +1.4 8.7 hypothetical protein compare
CA265_RS23635 +1.3 11.3 gliding motility lipoprotein GldJ compare
CA265_RS06585 +1.3 7.6 hypothetical protein compare
CA265_RS03290 +1.3 8.6 gliding motility-associated ABC transporter permease subunit GldF compare
CA265_RS15085 +1.3 9.3 hypothetical protein compare
CA265_RS18990 +1.3 11.9 cell surface protein SprA compare
CA265_RS24790 +1.3 9.9 peptidylprolyl isomerase compare
CA265_RS23985 +1.2 8.8 gliding motility lipoprotein GldB compare
CA265_RS23510 +1.2 6.8 energy transducer TonB compare
CA265_RS03115 +1.2 3.9 peroxiredoxin compare
CA265_RS20525 +1.2 2.2 hypothetical protein compare
CA265_RS13695 +1.1 5.1 hypothetical protein compare
CA265_RS23515 +1.1 6.1 hypothetical protein compare
CA265_RS00665 +1.1 3.8 lysine transporter LysE compare
CA265_RS19740 +1.1 7.1 gliding motility lipoprotein GldD compare
CA265_RS12940 +1.1 5.2 peptidase dimerization domain protein compare
CA265_RS19380 +1.1 7.4 beta-carotene 15,15'-monooxygenase compare
CA265_RS02965 +1.1 7.9 hypothetical protein compare
CA265_RS24720 +1.1 9.1 multidrug transporter compare
CA265_RS02760 +1.1 3.3 hypothetical protein compare
CA265_RS21905 +1.0 5.9 hypothetical protein compare
CA265_RS23640 +1.0 7.8 hypothetical protein compare
CA265_RS15115 +1.0 6.0 porin compare
CA265_RS18090 +1.0 8.8 gliding motility protein compare
CA265_RS23520 +1.0 6.8 phosphate ABC transporter substrate-binding protein compare
CA265_RS21060 +1.0 2.5 hypothetical protein compare
CA265_RS00655 +1.0 6.4 RNA polymerase subunit sigma-24 compare
CA265_RS09720 +1.0 6.7 transglycosylase compare
CA265_RS23525 +1.0 7.6 hypothetical protein compare
CA265_RS01165 +1.0 2.0 hypothetical protein compare
CA265_RS02765 +1.0 2.5 cell division protein ZapA compare
CA265_RS10600 +0.9 4.5 RNA polymerase subunit sigma-24 compare
CA265_RS09840 +0.9 2.5 YajQ family cyclic di-GMP-binding protein compare
CA265_RS20315 +0.9 8.1 hypothetical protein compare
CA265_RS20320 +0.9 8.5 hypothetical protein compare
CA265_RS14825 +0.9 2.1 outer membrane protein assembly factor BamD compare
CA265_RS23505 +0.9 3.7 biopolymer transporter ExbD compare
CA265_RS04330 +0.9 3.8 transcriptional regulator compare
CA265_RS22690 +0.9 6.4 hypothetical protein compare
CA265_RS08085 +0.9 5.9 aminodeoxychorismate lyase compare
CA265_RS17555 +0.9 6.2 hypothetical protein compare
CA265_RS08630 +0.9 3.6 esterase compare
CA265_RS21130 +0.8 5.3 Co2+/Mg2+ efflux protein ApaG compare
CA265_RS22620 +0.8 1.9 hypothetical protein compare
CA265_RS24025 +0.8 3.5 hypothetical protein compare
CA265_RS15200 +0.8 2.1 hypothetical protein compare
CA265_RS23675 +0.8 2.9 hypothetical protein compare
CA265_RS21365 +0.8 2.9 thiol reductase thioredoxin compare
CA265_RS17455 +0.8 3.3 hypothetical protein compare
CA265_RS23145 +0.8 3.1 hypothetical protein compare
CA265_RS21865 +0.8 5.3 two-component sensor histidine kinase compare
CA265_RS24230 +0.8 5.4 RNA polymerase sigma factor compare
CA265_RS01975 +0.8 2.4 cell division protein compare
CA265_RS04640 +0.8 4.4 efflux transporter periplasmic adaptor subunit compare
CA265_RS19140 +0.8 2.1 tRNA-Ile compare
CA265_RS18140 +0.8 4.2 DUF4271 domain-containing protein compare
CA265_RS21565 +0.7 1.1 cold-shock protein compare
CA265_RS21000 +0.7 3.1 ribosome silencing factor compare
CA265_RS20070 +0.7 3.5 NadR compare
CA265_RS08905 +0.7 2.7 DNA helicase RecQ compare
CA265_RS21870 +0.7 3.8 DNA-binding response regulator compare
CA265_RS17720 +0.7 5.9 hypothetical protein compare
CA265_RS08880 +0.7 5.5 chromate transporter compare
CA265_RS21900 +0.7 5.7 two-component sensor histidine kinase compare
CA265_RS03495 +0.7 1.9 cytochrome c biogenesis protein compare
CA265_RS00490 +0.7 0.8 hypothetical protein compare
CA265_RS13225 +0.7 4.7 exonuclease compare
CA265_RS07595 +0.7 3.7 MerR family transcriptional regulator compare
CA265_RS21255 +0.7 5.0 hypothetical protein compare
CA265_RS19535 +0.7 4.7 hypothetical protein compare
CA265_RS09140 +0.7 2.7 MerR family transcriptional regulator compare
CA265_RS16005 +0.7 3.0 hypothetical protein compare
CA265_RS10040 +0.7 2.0 hypothetical protein compare
CA265_RS15615 +0.7 3.5 malate dehydrogenase compare
CA265_RS19980 +0.7 3.2 hypothetical protein compare
CA265_RS17115 +0.7 2.8 arsenate reductase compare
CA265_RS13660 +0.6 4.4 oxidoreductase compare
CA265_RS24605 +0.6 1.1 hypothetical protein compare
CA265_RS13655 +0.6 4.1 hypothetical protein compare
CA265_RS23305 +0.6 1.1 hypothetical protein compare
CA265_RS11610 +0.6 0.6 RNA-binding protein S4 compare
CA265_RS03255 +0.6 4.5 glycerophosphodiester phosphodiesterase compare
CA265_RS23545 +0.6 1.1 NADH dehydrogenase subunit D compare
CA265_RS12665 +0.6 1.3 cold-shock protein compare
CA265_RS09035 +0.6 3.1 anti-anti-sigma factor compare
CA265_RS11670 +0.6 3.9 hypothetical protein compare
CA265_RS02045 +0.6 1.0 hypothetical protein compare
CA265_RS17560 +0.6 3.8 peptidylprolyl isomerase compare
CA265_RS18855 +0.6 2.0 hypothetical protein compare
CA265_RS25435 +0.6 2.2 hypothetical protein compare
CA265_RS20365 +0.6 1.6 hypothetical protein compare
CA265_RS23120 +0.6 1.7 hypothetical protein compare
CA265_RS15210 +0.5 2.4 DNA-binding response regulator compare
CA265_RS04635 +0.5 4.7 CusA/CzcA family heavy metal efflux RND transporter compare
CA265_RS06525 +0.5 2.3 hypothetical protein compare
CA265_RS12945 +0.5 4.2 hypothetical protein compare
CA265_RS12330 +0.5 0.9 response regulator compare
CA265_RS23905 +0.5 3.4 hypothetical protein compare
CA265_RS25295 +0.5 3.3 DoxX family protein compare
CA265_RS16785 +0.5 1.0 50S ribosomal protein L17 compare
CA265_RS00265 +0.5 2.7 RNA polymerase sigma-70 factor compare
CA265_RS21620 +0.5 3.4 hybrid sensor histidine kinase/response regulator compare
CA265_RS19955 +0.5 1.9 hypothetical protein compare
CA265_RS10475 +0.5 2.7 amidinotransferase compare
CA265_RS13735 +0.5 1.9 AsnC family transcriptional regulator compare
CA265_RS20335 +0.5 4.6 SusC/RagA family TonB-linked outer membrane protein compare
CA265_RS07735 +0.5 1.1 transcriptional regulator compare
CA265_RS19330 +0.5 3.0 dTDP-4-dehydrorhamnose reductase compare
CA265_RS20640 +0.5 3.3 hypothetical protein compare
CA265_RS01680 +0.5 3.5 hypothetical protein compare
CA265_RS14840 +0.5 3.5 DUF4835 domain-containing protein compare
CA265_RS06775 +0.5 2.4 competence protein TfoX compare
CA265_RS21260 +0.5 3.7 hypothetical protein compare
CA265_RS20280 +0.5 1.7 DoxX family protein compare
CA265_RS09415 +0.5 1.6 hypothetical protein compare
CA265_RS04275 +0.5 3.5 ATP-dependent protease ATP-binding subunit ClpX compare
CA265_RS16140 +0.5 0.7 hypothetical protein compare
CA265_RS11605 +0.5 3.5 Proline dehydrogenase (EC 1.5.5.2) (from data) compare
CA265_RS01205 +0.5 2.8 import component protein compare
CA265_RS00380 +0.5 2.5 hypothetical protein compare
CA265_RS21360 +0.5 1.9 hypothetical protein compare
CA265_RS22710 +0.5 3.7 hypothetical protein compare
CA265_RS18230 +0.5 1.8 two-component sensor histidine kinase compare
CA265_RS12890 +0.5 3.3 hypothetical protein compare
CA265_RS13740 +0.5 2.9 cysteine synthase compare
CA265_RS20570 +0.5 2.6 hypothetical protein compare
CA265_RS01220 +0.5 1.7 hypothetical protein compare
CA265_RS17710 +0.5 2.9 hypothetical protein compare
CA265_RS20310 +0.5 4.1 SusC/RagA family TonB-linked outer membrane protein compare
CA265_RS15335 +0.5 3.2 NAD-dependent epimerase compare
CA265_RS02240 +0.5 2.6 hypothetical protein compare
CA265_RS23230 +0.5 1.7 hypothetical protein compare
CA265_RS22530 +0.5 2.8 RDD family protein compare
CA265_RS21740 +0.5 2.1 RNA polymerase sigma factor compare
CA265_RS21395 +0.5 1.2 hypothetical protein compare
CA265_RS02605 +0.5 3.5 hypothetical protein compare
CA265_RS01795 +0.5 2.8 ABC transporter compare
CA265_RS22355 +0.4 2.7 translation initiation factor compare
CA265_RS04645 +0.4 3.2 cation transporter compare
CA265_RS21265 +0.4 2.7 hypothetical protein compare
CA265_RS13205 +0.4 3.0 zinc/iron permease compare
CA265_RS18415 +0.4 2.5 hypothetical protein compare
CA265_RS06250 +0.4 1.1 RNA polymerase subunit sigma-70 compare
CA265_RS01790 +0.4 3.1 hypothetical protein compare
CA265_RS21625 +0.4 3.4 histidine kinase compare
CA265_RS01725 +0.4 3.3 hypothetical protein compare
CA265_RS06930 +0.4 1.8 hypothetical protein compare
CA265_RS17735 +0.4 2.4 TIGR02453 family protein compare
CA265_RS19540 +0.4 3.4 tail-specific protease compare
CA265_RS20330 +0.4 3.6 SusD/RagB family nutrient-binding outer membrane lipoprotein compare
CA265_RS16940 +0.4 2.4 plasmid stabilization system protein compare
CA265_RS05945 +0.4 1.5 polysaccharide biosynthesis protein GtrA compare
CA265_RS01200 +0.4 2.6 hypothetical protein compare
CA265_RS15910 +0.4 3.5 hypothetical protein compare
CA265_RS19685 +0.4 2.3 hypothetical protein compare
CA265_RS00805 +0.4 2.3 hypothetical protein compare
CA265_RS21370 +0.4 2.0 peroxiredoxin compare
CA265_RS16325 +0.4 0.6 CsbD family protein compare
CA265_RS03375 +0.4 2.4 tRNA hydroxylase compare
CA265_RS19455 +0.4 3.3 hypothetical protein compare
CA265_RS18240 +0.4 2.8 hypothetical protein compare
CA265_RS24195 +0.4 2.5 TetR family transcriptional regulator compare
CA265_RS04655 +0.4 2.6 DNA-binding response regulator compare
CA265_RS21075 +0.4 2.8 ATPase compare
CA265_RS16225 +0.4 1.1 hypothetical protein compare
CA265_RS14935 +0.4 3.5 hypothetical protein compare
CA265_RS20375 +0.4 1.7 methyltransferase compare
CA265_RS21670 +0.4 0.9 hypothetical protein compare
CA265_RS15270 +0.4 2.1 hypothetical protein compare
CA265_RS06025 +0.4 1.4 hypothetical protein compare
CA265_RS04780 +0.4 1.2 polyketide cyclase compare
CA265_RS04865 +0.4 1.7 DUF4440 domain-containing protein compare
CA265_RS12280 +0.4 1.2 hypothetical protein compare
CA265_RS15215 +0.4 3.1 two-component sensor histidine kinase compare
CA265_RS20305 +0.4 3.2 RagB/SusD family nutrient uptake outer membrane protein compare
CA265_RS14595 +0.4 3.0 signal peptidase I compare
CA265_RS01955 +0.4 1.9 VapC toxin family PIN domain ribonuclease compare
CA265_RS20940 +0.4 2.6 hypothetical protein compare
CA265_RS04240 +0.4 2.4 cobalamin-binding protein compare
CA265_RS20925 +0.4 2.7 hypothetical protein compare
CA265_RS03000 +0.4 2.1 RNA-binding protein compare
CA265_RS01755 +0.4 2.9 hypothetical protein compare
CA265_RS23250 +0.4 2.0 hypothetical protein compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source L-Arabinose in Pedobacter sp. GW460-11-11-14-LB5

For carbon source L-Arabinose across organisms