Experiment set2IT059 for Cupriavidus basilensis FW507-4G11

Compare to:

a-Ketoglutaric acid disodium salt hydrate carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS14390 -6.3 -4.4 3-isopropylmalate dehydratase compare
RR42_RS16250 -6.0 -5.8 sulfate adenylyltransferase compare
RR42_RS19005 -6.0 -4.1 3-dehydroquinate synthase compare
RR42_RS06485 -6.0 -7.1 chorismate synthase compare
RR42_RS33255 -5.9 -3.7 protein-tyrosine phosphatase compare
RR42_RS16255 -5.9 -8.1 sulfate adenylyltransferase compare
RR42_RS16275 -5.6 -3.9 membrane protein compare
RR42_RS04475 -5.3 -9.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS30655 -5.1 -7.7 LysR family transcriptional regulator compare
RR42_RS01160 -5.1 -10.5 homoserine O-acetyltransferase compare
RR42_RS18300 -5.0 -6.4 anthranilate synthase subunit II compare
RR42_RS16270 -5.0 -9.6 sulfite reductase compare
RR42_RS07555 -4.9 -3.4 potassium transporter Kup compare
RR42_RS14365 -4.9 -3.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS18305 -4.8 -3.2 anthranilate phosphoribosyltransferase compare
RR42_RS16265 -4.8 -4.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS05860 -4.7 -5.6 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS33260 -4.7 -8.4 multidrug MFS transporter compare
RR42_RS14400 -4.5 -6.2 isopropylmalate isomerase compare
RR42_RS07425 -4.3 -7.0 IclR family transcriptional regulator compare
RR42_RS30660 -4.3 -9.0 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS01385 -4.3 -3.8 5,10-methylenetetrahydrofolate reductase compare
RR42_RS16245 -4.3 -6.2 uroporphyrin-III methyltransferase compare
RR42_RS18855 -4.2 -2.9 preprotein translocase compare
RR42_RS18295 -4.2 -11.6 anthranilate synthase component I compare
RR42_RS12175 -4.2 -12.7 malate synthase compare
RR42_RS14385 -4.2 -5.9 3-isopropylmalate dehydrogenase compare
RR42_RS33240 -4.1 -17.4 GDP-L-fucose synthase compare
RR42_RS19010 -4.1 -7.2 shikimate kinase compare
RR42_RS33210 -4.1 -6.1 teichoic acid biosynthesis protein compare
RR42_RS16280 -3.8 -5.8 transcriptional regulator compare
RR42_RS33250 -3.7 -8.7 tyrosine protein kinase compare
RR42_RS01290 -3.5 -6.3 thiamine biosynthesis protein ThiC compare
RR42_RS18990 -3.4 -16.7 glutamate synthase compare
RR42_RS12040 -3.4 -11.2 MFS transporter compare
RR42_RS15890 -3.3 -9.0 heme biosynthesis protein HemY compare
RR42_RS01845 -3.3 -1.9 glycerol-3-phosphate dehydrogenase compare
RR42_RS14320 -3.2 -4.3 O-succinylhomoserine sulfhydrylase compare
RR42_RS13880 -3.2 -13.8 AMP-dependent synthetase compare
RR42_RS17645 -3.1 -7.2 shikimate dehydrogenase compare
RR42_RS17055 -3.1 -10.3 LuxR family transcriptional regulator compare
RR42_RS19090 -3.0 -2.6 cytochrome C compare
RR42_RS33245 -3.0 -8.3 mannose-1-phosphate guanyltransferase compare
RR42_RS04460 -2.9 -5.0 chorismate mutase compare
RR42_RS15415 -2.8 -2.7 membrane protein compare
RR42_RS18985 -2.8 -5.9 glutamate synthase compare
RR42_RS12925 -2.7 -4.0 ATPase compare
RR42_RS03095 -2.7 -3.1 succinyl-CoA synthetase subunit beta compare
RR42_RS17060 -2.7 -13.9 histidine kinase compare
RR42_RS16240 -2.6 -1.4 cobalamin biosynthesis protein CbiX compare
RR42_RS04895 -2.6 -12.2 serine/threonine protein phosphatase compare
RR42_RS02045 -2.5 -11.2 GTPase compare
RR42_RS26900 -2.5 -3.6 enoyl-CoA hydratase compare
RR42_RS33235 -2.5 -6.6 GDP-mannose 4,6-dehydratase compare
RR42_RS21220 -2.5 -1.6 iron transporter FeoB compare
RR42_RS04700 -2.4 -1.7 ribonuclease G compare
RR42_RS11795 -2.4 -3.8 PEP synthetase regulatory protein compare
RR42_RS15410 -2.4 -5.7 membrane protein compare
RR42_RS34255 -2.4 -8.6 aldehyde dehydrogenase compare
RR42_RS24605 -2.4 -5.6 TetR family transcriptional regulator compare
RR42_RS18850 -2.3 -2.7 preprotein translocase subunit TatC compare
RR42_RS04535 -2.3 -4.0 cysteine synthase compare
RR42_RS00380 -2.3 -8.1 GntR family transcriptional regulator compare
RR42_RS02705 -2.2 -2.8 Holliday junction DNA helicase RuvA compare
RR42_RS01380 -2.2 -2.3 membrane protein compare
RR42_RS15895 -2.2 -6.7 uroporphyrinogen III methyltransferase compare
RR42_RS20375 -2.1 -3.4 transcriptional regulator compare
RR42_RS14360 -2.1 -1.3 tryptophan synthase subunit alpha compare
RR42_RS18815 -2.1 -8.0 cytochrome C compare
RR42_RS33215 -2.0 -11.4 transferase compare
RR42_RS18820 -2.0 -7.5 cytochrome B compare
RR42_RS26905 -2.0 -7.0 methylcrotonoyl-CoA carboxylase compare
RR42_RS20205 -2.0 -2.1 chromosome partitioning protein compare
RR42_RS35875 -2.0 -9.7 UDP-galactose-4-epimerase compare
RR42_RS17390 -1.9 -6.0 ATP-dependent DNA helicase RecG compare
RR42_RS06095 -1.8 -4.6 hypothetical protein compare
RR42_RS30320 -1.8 -2.5 hypothetical protein compare
RR42_RS12550 -1.8 -5.8 hypothetical protein compare
RR42_RS33575 -1.8 -2.8 hypothetical protein compare
RR42_RS17105 -1.8 -7.8 Clp protease ClpX compare
RR42_RS07605 -1.7 -6.8 poly-beta-hydroxybutyrate polymerase compare
RR42_RS18270 -1.7 -3.6 murein transglycosylase compare
RR42_RS00715 -1.7 -4.0 ferritin compare
RR42_RS17555 -1.7 -1.7 hypothetical protein compare
RR42_RS00115 -1.7 -1.8 hypothetical protein compare
RR42_RS01255 -1.7 -7.4 lauroyl acyltransferase compare
RR42_RS04470 -1.6 -3.6 prephenate dehydrogenase compare
RR42_RS20380 -1.6 -5.1 histidine kinase compare
RR42_RS05420 -1.6 -4.1 membrane protein compare
RR42_RS12015 -1.6 -1.8 dihydrolipoamide acyltransferase compare
RR42_RS12050 -1.6 -7.3 DNA polymerase compare
RR42_RS03080 -1.6 -4.0 recombinase RecA compare
RR42_RS01885 -1.6 -3.9 cytochrome C oxidase assembly protein compare
RR42_RS18930 -1.6 -3.2 BolA family transcriptional regulator compare
RR42_RS17930 -1.5 -4.3 RNA pyrophosphohydrolase compare
RR42_RS07615 -1.5 -2.2 3-ketoacyl-ACP reductase compare
RR42_RS15740 -1.5 -2.1 hypothetical protein compare
RR42_RS13910 -1.5 -6.1 glutamate racemase compare
RR42_RS22495 -1.5 -3.4 hypothetical protein compare
RR42_RS14965 -1.5 -3.3 hypothetical protein compare
RR42_RS13800 -1.5 -4.5 formyltetrahydrofolate deformylase compare
RR42_RS16260 -1.5 -0.8 phosphoadenosine phosphosulfate reductase compare
RR42_RS21820 -1.4 -4.3 GntR family transcriptional regulator compare
RR42_RS08330 -1.4 -1.4 hypothetical protein compare
RR42_RS00875 -1.4 -9.1 isocitrate dehydrogenase compare
RR42_RS02085 -1.4 -5.0 RNA polymerase subunit sigma-54 compare
RR42_RS16740 -1.4 -2.2 hypothetical protein compare
RR42_RS01720 -1.4 -1.7 membrane protein compare
RR42_RS26935 -1.4 -3.5 farnesyl-diphosphate farnesyltransferase compare
RR42_RS05955 -1.4 -1.4 hypothetical protein compare
RR42_RS19065 -1.3 -7.0 transcriptional regulator compare
RR42_RS33650 -1.3 -1.8 IclR family transcriptional regulator compare
RR42_RS01915 -1.3 -4.3 cytochrome C oxidase subunit I compare
RR42_RS17685 -1.3 -7.4 alkyl hydroperoxide reductase compare
RR42_RS07360 -1.3 -2.6 ATPase compare
RR42_RS17590 -1.3 -1.9 16S rRNA methyltransferase compare
RR42_RS17620 -1.3 -3.7 phosphatidylglycerophosphatase compare
RR42_RS14790 -1.3 -6.8 cobalamin biosynthesis protein CobD compare
RR42_RS15745 -1.3 -6.1 group1 glycosyl transferase compare
RR42_RS15460 -1.3 -4.7 translocation protein TolB compare
RR42_RS12180 -1.2 -2.5 haloacid dehalogenase compare
RR42_RS07620 -1.2 -2.7 polyhydroxyalkanoate synthesis repressor PhaR compare
RR42_RS26200 -1.2 -2.0 hypothetical protein compare
RR42_RS03415 -1.2 -5.7 N-acetylmuramoyl-L-alanine amidase compare
RR42_RS04320 -1.2 -4.0 cell division protein FtsK compare
RR42_RS25785 -1.2 -2.1 TetR family transcriptional regulator compare
RR42_RS05965 -1.2 -1.9 malonic semialdehyde reductase compare
RR42_RS18825 -1.2 -2.9 ubiquinol-cytochrome C reductase compare
RR42_RS29785 -1.2 -4.0 hypothetical protein compare
RR42_RS08000 -1.2 -1.3 hypothetical protein compare
RR42_RS03925 -1.2 -2.5 hypothetical protein compare
RR42_RS05990 -1.2 -5.9 aromatic amino acid aminotransferase compare
RR42_RS30640 -1.2 -5.0 DNA mismatch repair protein MutT compare
RR42_RS18730 -1.2 -2.1 hypothetical protein compare
RR42_RS32050 -1.2 -1.9 AraC family transcriptional regulator compare
RR42_RS33195 -1.1 -7.0 UDP-sugar lipid carrier transferase compare
RR42_RS00790 -1.1 -5.0 chemotaxis protein CheY compare
RR42_RS07565 -1.1 -6.0 transcription accessory protein compare
RR42_RS05485 -1.1 -2.4 polynucleotide phosphorylase/polyadenylase compare
RR42_RS13190 -1.1 -4.1 outer membrane metallopeptidase lipoprotein nlpD compare
RR42_RS08945 -1.1 -1.4 hypothetical protein compare
RR42_RS06810 -1.1 -2.6 hypothetical protein compare
RR42_RS15475 -1.1 -4.1 protein tolQ compare
RR42_RS36700 -1.1 -3.9 multidrug transporter compare
RR42_RS11220 -1.1 -4.8 peptide ABC transporter compare
RR42_RS25455 -1.0 -1.2 acetyl-CoA acetyltransferase compare
RR42_RS28885 -1.0 -2.9 membrane protein compare
RR42_RS37240 -1.0 -1.0 hypothetical protein compare
RR42_RS14495 -1.0 -5.2 hypothetical protein compare
RR42_RS31530 -1.0 -2.6 histidine kinase compare
RR42_RS34870 -1.0 -4.4 hypothetical protein compare
RR42_RS16220 -1.0 -1.1 DNA polymerase III subunit chi compare
RR42_RS15035 -1.0 -3.6 ZIP zinc transporter compare
RR42_RS02775 -1.0 -2.0 molecular chaperone SurA compare
RR42_RS06020 -1.0 -0.8 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS19635 -1.0 -1.4 hypothetical protein compare
RR42_RS09100 -1.0 -5.8 transcriptional regulator compare
RR42_RS29865 -0.9 -1.6 hypothetical protein compare
RR42_RS20310 -0.9 -0.9 copper-binding protein compare
RR42_RS06430 -0.9 -1.7 hypothetical protein compare
RR42_RS08365 -0.9 -4.3 hypothetical protein compare
RR42_RS00760 -0.9 -2.2 hypothetical protein compare
RR42_RS31495 -0.9 -1.3 Cro/Cl family transcriptional regulator compare
RR42_RS16510 -0.9 -1.8 hypothetical protein compare
RR42_RS03670 -0.9 -1.9 isochorismatase compare
RR42_RS11180 -0.9 -3.0 peptidylprolyl isomerase compare
RR42_RS06250 -0.9 -1.7 dihydrodipicolinate synthase compare
RR42_RS17400 -0.9 -4.5 queuine tRNA-ribosyltransferase compare
RR42_RS28290 -0.9 -3.1 DNA-binding protein compare
RR42_RS18670 -0.9 -2.7 metal-dependent hydrolase compare
RR42_RS31285 -0.9 -1.5 XRE family transcriptional regulator compare
RR42_RS04765 -0.9 -2.1 3-oxoacyl-ACP reductase compare
RR42_RS14235 -0.9 -0.9 hypothetical protein compare
RR42_RS32235 -0.9 -3.1 hopanoid biosynthesis associated radical SAM protein HpnH compare
RR42_RS14775 -0.9 -3.8 peptidase M48 compare
RR42_RS15750 -0.8 -3.6 hypothetical protein compare
RR42_RS34260 -0.8 -3.8 Alcohol dehydrogenase (EC 1.1.1.1) (from data) compare
RR42_RS32520 -0.8 -2.4 cytochrome C compare
RR42_RS05425 -0.8 -3.5 membrane protein compare
RR42_RS21095 -0.8 -2.0 GntR family transcriptional regulator compare
RR42_RS20570 -0.8 -1.2 biopolymer transporter ExbD compare
RR42_RS19445 -0.8 -3.2 TetR family transcriptional regulator compare
RR42_RS21790 -0.8 -1.8 short-chain dehydrogenase compare
RR42_RS34395 -0.8 -1.3 hypothetical protein compare
RR42_RS20350 -0.8 -1.3 hypothetical protein compare
RR42_RS00955 -0.8 -3.6 hydroxymethylglutaryl-CoA lyase compare
RR42_RS00610 -0.8 -2.8 hypothetical protein compare
RR42_RS02500 -0.8 -1.8 TetR family transcriptional regulator compare
RR42_RS01875 -0.8 -3.3 cytochrome C oxidase subunit II compare
RR42_RS13015 -0.8 -3.8 fatty acid hydroxylase compare
RR42_RS25625 -0.8 -1.8 LysR family transcriptional regulator compare
RR42_RS01880 -0.8 -3.0 cytochrome oxidase subunit I compare
RR42_RS03390 -0.8 -3.4 ABC transporter substrate-binding protein compare
RR42_RS15090 -0.8 -2.4 DNA helicase compare
RR42_RS06875 -0.8 -1.3 hypothetical protein compare
RR42_RS32600 -0.8 -2.9 cytochrome O ubiquinol oxidase subunit II compare
RR42_RS25200 -0.8 -2.5 TetR family transcriptional regulator compare
RR42_RS24215 -0.8 -3.0 hypothetical protein compare
RR42_RS32460 -0.8 -2.1 LysR family transcriptional regulator compare
RR42_RS01820 -0.8 -3.4 peptidase S41 compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source a-Ketoglutaric acid disodium salt hydrate in Cupriavidus basilensis FW507-4G11

For carbon source a-Ketoglutaric acid disodium salt hydrate across organisms