Experiment set2IT059 for Ralstonia sp. UNC404CL21Col

Compare to:

Protocatechuic Acid carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS08630 -8.1 -11.1 dihydroorotase compare
ABZR87_RS15775 -8.0 -5.5 4-carboxymuconolactone decarboxylase compare
ABZR87_RS14540 -7.3 -7.1 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS14505 -7.2 -4.9 phosphoribosylanthranilate isomerase compare
ABZR87_RS01810 -6.9 -4.7 glutamate 5-kinase compare
ABZR87_RS07360 -6.6 -12.8 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS15790 -6.5 -6.3 3-oxoadipyl-CoA thiolase compare
ABZR87_RS02640 -6.3 -18.5 diaminopimelate decarboxylase compare
ABZR87_RS02160 -6.3 -7.5 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS15785 -6.2 -10.3 3-carboxy-cis,cis-muconate cycloisomerase conserved
ABZR87_RS12090 -6.2 -8.4 protocatechuate 3,4-dioxygenase subunit alpha compare
ABZR87_RS13250 -6.1 -5.7 phosphoserine phosphatase SerB compare
ABZR87_RS12085 -6.1 -15.3 protocatechuate 3,4-dioxygenase subunit beta conserved
ABZR87_RS02565 -6.0 -5.9 glutamate synthase subunit beta compare
ABZR87_RS14535 -6.0 -5.8 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS09450 -5.8 -9.7 prephenate dehydratase compare
ABZR87_RS02570 -5.8 -25.1 glutamate synthase-related protein compare
ABZR87_RS15800 -5.8 -13.5 3-oxoacid CoA-transferase subunit A compare
ABZR87_RS06770 -5.8 -11.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS09445 -5.7 -16.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS09465 -5.7 -7.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS02155 -5.7 -10.2 anthranilate phosphoribosyltransferase compare
ABZR87_RS05200 -5.6 -20.5 homoserine O-acetyltransferase compare
ABZR87_RS02145 -5.6 -3.8 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS00190 -5.5 -12.3 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS14490 -5.4 -10.5 tryptophan synthase subunit alpha compare
ABZR87_RS01645 -5.4 -7.4 type II 3-dehydroquinate dehydratase compare
ABZR87_RS01110 -5.3 -12.4 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS16170 -5.3 -7.6 argininosuccinate lyase compare
ABZR87_RS14950 -5.3 -3.7 acetolactate synthase small subunit compare
ABZR87_RS02595 -5.3 -10.6 shikimate kinase compare
ABZR87_RS14500 -5.1 -15.7 tryptophan synthase subunit beta compare
ABZR87_RS00210 -5.1 -9.2 nitrite/sulfite reductase compare
ABZR87_RS02140 -5.1 -20.7 anthranilate synthase component I compare
ABZR87_RS14530 -5.1 -9.8 3-isopropylmalate dehydrogenase compare
ABZR87_RS22970 -5.1 -12.0 cystathionine gamma-synthase family protein compare
ABZR87_RS07380 -5.1 -15.9 FAD/FMN-binding oxidoreductase compare
ABZR87_RS13790 -4.9 -13.8 chorismate synthase compare
ABZR87_RS15780 -4.9 -9.9 3-oxoadipate enol-lactonase conserved
ABZR87_RS08625 -4.7 -5.6 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS00835 -4.6 -7.7 argininosuccinate synthase compare
ABZR87_RS02590 -4.6 -12.6 3-dehydroquinate synthase compare
ABZR87_RS05170 -4.6 -3.2 acetylglutamate kinase compare
ABZR87_RS07050 -4.5 -3.1 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS12080 -4.4 -6.9 pca operon transcription factor PcaQ compare
ABZR87_RS00185 -4.4 -4.3 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS15795 -4.4 -7.2 CoA transferase subunit B compare
ABZR87_RS04865 -4.4 -6.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS00200 -4.3 -5.5 phosphoadenylyl-sulfate reductase compare
ABZR87_RS05590 -4.3 -5.4 orotate phosphoribosyltransferase compare
ABZR87_RS11440 -4.3 -9.2 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS09935 -4.0 -7.2 amino acid aminotransferase compare
ABZR87_RS00195 -3.8 -4.6 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS00285 -3.4 -2.3 acetylornithine transaminase compare
ABZR87_RS14955 -3.4 -4.0 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS05010 -3.3 -4.5 rod shape-determining protein RodA compare
ABZR87_RS00220 -3.2 -10.2 CysB family HTH-type transcriptional regulator compare
ABZR87_RS01605 -2.9 -10.3 shikimate dehydrogenase compare
ABZR87_RS05025 -2.8 -3.3 rod shape-determining protein MreC compare
ABZR87_RS12790 -2.8 -7.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS00325 -2.7 -3.3 peptidylprolyl isomerase compare
ABZR87_RS10785 -2.7 -6.6 exodeoxyribonuclease V subunit beta compare
ABZR87_RS00205 -2.7 -3.5 DUF934 domain-containing protein compare
ABZR87_RS16180 -2.6 -3.6 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS09515 -2.6 -2.6 cysteine synthase CysM compare
ABZR87_RS07635 -2.5 -3.3 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS04785 -2.5 -9.0 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS10120 -2.4 -3.2 YceD family protein compare
ABZR87_RS06705 -2.4 -13.4 glutamate--cysteine ligase compare
ABZR87_RS10820 -2.4 -6.4 LysR substrate-binding domain-containing protein compare
ABZR87_RS05015 -2.3 -6.5 penicillin-binding protein 2 compare
ABZR87_RS08695 -2.3 -13.3 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS08655 -2.3 -7.1 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS06645 -2.3 -3.5 TlpA disulfide reductase family protein compare
ABZR87_RS10240 -2.2 -3.3 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS07705 -2.2 -4.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS11125 -2.1 -7.5 cell division protein ZapE compare
ABZR87_RS02480 -2.0 -2.4 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS01565 -2.0 -10.8 NADP-dependent malic enzyme compare
ABZR87_RS11940 -2.0 -3.8 SsrA-binding protein SmpB compare
ABZR87_RS13300 -2.0 -9.3 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS11065 -1.9 -6.1 nitrogen regulation protein NR(II) compare
ABZR87_RS00435 -1.9 -9.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS12795 -1.8 -5.6 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS05100 -1.8 -7.3 RNA polymerase-binding protein DksA compare
ABZR87_RS09460 -1.8 -5.2 prephenate dehydrogenase compare
ABZR87_RS13705 -1.7 -2.1 integration host factor subunit alpha compare
ABZR87_RS10780 -1.7 -4.3 PD-(D/E)XK nuclease family protein compare
ABZR87_RS02575 -1.7 -5.5 transposase compare
ABZR87_RS11070 -1.6 -7.9 nitrogen regulation protein NR(I) compare
ABZR87_RS08700 -1.6 -8.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS06715 -1.6 -2.7 PTS sugar transporter subunit IIA compare
ABZR87_RS01225 -1.5 -4.3 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS12785 -1.5 -5.3 endopeptidase La compare
ABZR87_RS15705 -1.5 -3.3 UvrD-helicase domain-containing protein compare
ABZR87_RS07625 -1.4 -2.1 Holliday junction branch migration protein RuvA compare
ABZR87_RS09500 -1.4 -4.4 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
ABZR87_RS11015 -1.4 -5.4 amino-acid N-acetyltransferase compare
ABZR87_RS20140 -1.4 -2.3 PAAR domain-containing protein compare
ABZR87_RS01425 -1.4 -3.4 ferric iron uptake transcriptional regulator compare
ABZR87_RS00745 -1.4 -1.4 3-hydroxyacyl-CoA dehydrogenase compare
ABZR87_RS11925 -1.3 -8.8 phosphoenolpyruvate synthase compare
ABZR87_RS23095 -1.3 -1.4 MarR family transcriptional regulator compare
ABZR87_RS06710 -1.3 -10.0 glutathione synthase compare
ABZR87_RS06495 -1.3 -2.6 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS05065 -1.3 -3.8 tyrosine recombinase XerC compare
ABZR87_RS20500 -1.3 -1.6 hypothetical protein compare
ABZR87_RS21095 -1.3 -1.2 TRAP transporter small permease compare
ABZR87_RS14495 -1.2 -2.7 site-specific DNA-methyltransferase compare
ABZR87_RS00275 -1.2 -6.0 NAD-dependent epimerase/dehydratase family protein compare
ABZR87_RS08040 -1.2 -5.6 lipopolysaccharide heptosyltransferase II compare
ABZR87_RS00215 -1.2 -2.9 sulfite exporter TauE/SafE family protein compare
ABZR87_RS05580 -1.2 -3.3 diaminopimelate epimerase compare
ABZR87_RS01270 -1.2 -6.3 ATP-dependent DNA helicase RecG compare
ABZR87_RS09635 -1.2 -1.8 ribosome small subunit-dependent GTPase A compare
ABZR87_RS10620 -1.2 -1.7 serine O-acetyltransferase compare
ABZR87_RS14675 -1.1 -1.2 glyoxalase compare
ABZR87_RS02150 -1.1 -2.8 lysozyme inhibitor LprI family protein compare
ABZR87_RS18170 -1.1 -1.7 hypothetical protein compare
ABZR87_RS08750 -1.1 -4.7 lipopolysaccharide heptosyltransferase I compare
ABZR87_RS08670 -1.1 -7.3 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
ABZR87_RS07965 -1.1 -4.1 recombinase RecA compare
ABZR87_RS07700 -1.1 -1.6 peptidylprolyl isomerase compare
ABZR87_RS21940 -1.1 -1.1 hypothetical protein compare
ABZR87_RS11815 -1.1 -6.4 [protein-PII] uridylyltransferase compare
ABZR87_RS13475 -1.0 -5.4 PAS domain S-box protein compare
ABZR87_RS14965 -1.0 -2.7 DUF3619 family protein compare
ABZR87_RS15755 -1.0 -4.0 ABC transporter ATP-binding protein conserved
ABZR87_RS15765 -1.0 -6.0 branched-chain amino acid ABC transporter permease conserved
ABZR87_RS10980 -1.0 -1.7 tRNA-Leu compare
ABZR87_RS15770 -1.0 -5.7 branched-chain amino acid ABC transporter permease conserved
ABZR87_RS11970 -1.0 -2.2 hypothetical protein compare
ABZR87_RS15405 -0.9 -2.5 YebC/PmpR family DNA-binding transcriptional regulator compare
ABZR87_RS13290 -0.9 -4.6 3-ketoacyl-ACP reductase compare
ABZR87_RS01430 -0.9 -7.5 LysR family transcriptional regulator compare
ABZR87_RS01980 -0.9 -2.5 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS16225 -0.9 -1.4 twin-arginine translocation signal domain-containing protein compare
ABZR87_RS15505 -0.8 -1.2 DNA polymerase III subunit alpha compare
ABZR87_RS11770 -0.8 -4.1 succinyldiaminopimelate transaminase compare
ABZR87_RS03075 -0.8 -4.6 AGE family epimerase/isomerase compare
ABZR87_RS04995 -0.8 -1.6 DNA topoisomerase III compare
ABZR87_RS22300 -0.8 -1.0 flagellar biosynthesis anti-sigma factor FlgM compare
ABZR87_RS09505 -0.8 -4.9 ADP-glyceromanno-heptose 6-epimerase compare
ABZR87_RS13645 -0.8 -1.0 hypothetical protein compare
ABZR87_RS11435 -0.8 -2.2 Mth938-like domain-containing protein compare
ABZR87_RS13050 -0.8 -1.3 GpE family phage tail protein compare
ABZR87_RS08680 -0.8 -4.3 glycosyltransferase compare
ABZR87_RS08645 -0.8 -0.9 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS00830 -0.8 -1.6 pyrimidine/purine nucleoside phosphorylase compare
ABZR87_RS13495 -0.7 -3.0 exodeoxyribonuclease III compare
ABZR87_RS06295 -0.7 -1.7 acyl-CoA dehydrogenase family protein compare
ABZR87_RS09615 -0.7 -1.4 50S ribosomal protein L19 compare
ABZR87_RS16185 -0.7 -1.1 dCTP deaminase compare
ABZR87_RS02320 -0.7 -1.6 cytochrome o ubiquinol oxidase subunit IV compare
ABZR87_RS11265 -0.7 -1.9 amino acid ABC transporter ATP-binding protein compare
ABZR87_RS01555 -0.7 -0.6 barstar family protein compare
ABZR87_RS10170 -0.7 -3.5 RseA family anti-sigma factor compare
ABZR87_RS15275 -0.7 -1.4 hypothetical protein compare
ABZR87_RS08235 -0.7 -1.0 hypothetical protein compare
ABZR87_RS15485 -0.7 -4.0 glycosyltransferase family 2 protein compare
ABZR87_RS11375 -0.7 -4.3 inorganic phosphate transporter compare
ABZR87_RS21795 -0.7 -3.0 NUDIX domain-containing protein compare
ABZR87_RS15645 -0.7 -3.0 exodeoxyribonuclease VII small subunit compare
ABZR87_RS18165 -0.7 -1.2 hypothetical protein compare
ABZR87_RS10195 -0.7 -1.9 signal peptidase I compare
ABZR87_RS09700 -0.7 -1.7 DEAD/DEAH box helicase compare
ABZR87_RS08980 -0.6 -2.1 cell envelope integrity protein TolA compare
ABZR87_RS03180 -0.6 -1.5 hypothetical protein compare
ABZR87_RS19185 -0.6 -2.9 response regulator compare
ABZR87_RS08640 -0.6 -2.3 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS15240 -0.6 -1.1 YicC/YloC family endoribonuclease compare
ABZR87_RS21175 -0.6 -2.2 acyl-CoA dehydrogenase family protein compare
ABZR87_RS03420 -0.6 -1.0 type II secretion system minor pseudopilin GspI compare
ABZR87_RS16960 -0.6 -1.5 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS00795 -0.6 -1.7 site-specific tyrosine recombinase XerD compare
ABZR87_RS14375 -0.6 -1.5 fumarate hydratase compare
ABZR87_RS20245 -0.6 -1.8 hypothetical protein compare
ABZR87_RS15605 -0.6 -1.4 hypothetical protein compare
ABZR87_RS15440 -0.6 -1.3 ribonuclease G compare
ABZR87_RS07665 -0.6 -3.6 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS05205 -0.6 -2.1 methionine biosynthesis protein MetW compare
ABZR87_RS05470 -0.6 -1.2 amino acid ABC transporter ATP-binding protein compare
ABZR87_RS08705 -0.6 -5.3 glycosyltransferase family 4 protein compare
ABZR87_RS15490 -0.6 -4.3 glycosyltransferase family 2 protein compare
ABZR87_RS08710 -0.6 -4.8 sugar transferase compare
ABZR87_RS14470 -0.5 -1.8 CvpA family protein compare
ABZR87_RS16130 -0.5 -3.0 fused uroporphyrinogen-III synthase HemD/membrane protein HemX compare
ABZR87_RS06845 -0.5 -3.1 heme o synthase compare
ABZR87_RS10610 -0.5 -1.1 inositol monophosphatase family protein compare
ABZR87_RS15750 -0.5 -3.2 ABC transporter substrate-binding protein conserved
ABZR87_RS07620 -0.5 -1.5 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS16210 -0.5 -2.9 hypothetical protein compare
ABZR87_RS00600 -0.5 -1.6 hypothetical protein compare
ABZR87_RS16270 -0.5 -1.3 cold-shock protein compare
ABZR87_RS15500 -0.5 -3.3 glycosyltransferase compare
ABZR87_RS10550 -0.5 -1.1 outer membrane protein assembly factor BamC compare
ABZR87_RS08665 -0.5 -3.5 GNAT family N-acetyltransferase compare
ABZR87_RS17650 -0.5 -3.0 TetR/AcrR family transcriptional regulator compare
ABZR87_RS08610 -0.5 -1.9 YqgE/AlgH family protein compare
ABZR87_RS20690 -0.5 -1.2 recombinase-like helix-turn-helix domain-containing protein compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Protocatechuic Acid in Ralstonia sp. UNC404CL21Col

For carbon source Protocatechuic Acid across organisms