Experiment set2IT059 for Burkholderia phytofirmans PsJN

Compare to:

LB, pH5

200 most important genes:

  gene name fitness t score description  
BPHYT_RS36275 -4.4 -3.1 hypothetical protein compare
BPHYT_RS15620 -3.5 -6.8 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS23840 -3.4 -8.2 methyltransferase compare
BPHYT_RS15415 -3.3 -16.9 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS14855 -3.2 -3.2 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS17700 -3.1 -5.8 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS17685 -2.9 -13.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS17680 -2.8 -6.5 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS17690 -2.7 -12.3 imidazole glycerol phosphate synthase compare
BPHYT_RS02610 -2.6 -6.0 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS17530 -2.5 -6.9 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS14845 -2.5 -3.1 cysteine synthase compare
BPHYT_RS12465 -2.4 -4.3 inositol monophosphatase compare
BPHYT_RS12530 -2.4 -7.8 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS17520 -2.3 -7.3 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS17670 -2.3 -6.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS17675 -2.3 -4.2 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS16710 -2.2 -2.4 LysR family transcriptional regulator compare
BPHYT_RS17715 -2.2 -8.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS06610 -2.1 -2.6 triosephosphate isomerase compare
BPHYT_RS17095 -2.1 -5.3 proline--tRNA ligase compare
BPHYT_RS06990 -2.0 -2.3 membrane protein compare
BPHYT_RS02865 -2.0 -4.5 hypothetical protein compare
BPHYT_RS12925 -2.0 -1.9 exodeoxyribonuclease III compare
BPHYT_RS17265 -1.9 -1.9 cell division protein compare
BPHYT_RS02135 -1.9 -2.8 glyoxylate reductase compare
BPHYT_RS34815 -1.8 -3.5 ABC transporter compare
BPHYT_RS04290 -1.8 -2.2 glycosyl transferase family 2 compare
BPHYT_RS16270 -1.7 -4.3 phosphoglycerate kinase compare
BPHYT_RS02590 -1.7 -6.8 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS14195 -1.7 -3.7 carbamoyl phosphate synthase small subunit compare
BPHYT_RS16835 -1.6 -6.8 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS06900 -1.6 -6.4 aspartate aminotransferase compare
BPHYT_RS08960 -1.6 -2.0 threonine synthase compare
BPHYT_RS06985 -1.6 -8.6 fumarate hydratase compare
BPHYT_RS14865 -1.6 -3.5 UDP-glucose 6-dehydrogenase compare
BPHYT_RS06685 -1.5 -2.6 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS33580 -1.5 -4.6 geranyltranstransferase compare
BPHYT_RS08565 -1.5 -2.4 dihydroorotate dehydrogenase compare
BPHYT_RS12845 -1.5 -11.2 ATPase compare
BPHYT_RS02285 -1.5 -4.6 cell division protein compare
BPHYT_RS02860 -1.4 -1.5 membrane protein compare
BPHYT_RS34780 -1.4 -4.8 phytoene synthase compare
BPHYT_RS29620 -1.4 -1.3 hypothetical protein compare
BPHYT_RS16255 -1.4 -5.3 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS25875 -1.4 -1.8 type III secretion protein compare
BPHYT_RS12840 -1.4 -5.0 pyruvate dehydrogenase compare
BPHYT_RS08825 -1.3 -1.5 tartronate semialdehyde reductase compare
BPHYT_RS02595 -1.3 -1.7 sulfurtransferase compare
BPHYT_RS13605 -1.3 -1.2 tRNA-Pro compare
BPHYT_RS05320 -1.3 -2.1 beta-lactamase compare
BPHYT_RS03400 -1.3 -1.6 ATP-dependent DNA helicase RecG compare
BPHYT_RS04965 -1.3 -6.9 ATP-binding protein compare
BPHYT_RS14755 -1.2 -2.8 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS16175 -1.2 -3.0 hemolysin D compare
BPHYT_RS16880 -1.2 -1.3 malic enzyme compare
BPHYT_RS09480 -1.2 -1.8 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS08850 -1.2 -1.6 transcriptional regulator compare
BPHYT_RS31060 -1.2 -1.9 capsular polysaccharide biosynthesis protein compare
BPHYT_RS33610 -1.2 -1.7 DNA polymerase I compare
BPHYT_RS26355 -1.2 -2.1 hypothetical protein compare
BPHYT_RS01485 -1.2 -1.0 histidine kinase compare
BPHYT_RS34810 -1.2 -4.4 RND transporter compare
BPHYT_RS14450 -1.1 -2.9 hypothetical protein compare
BPHYT_RS09515 -1.1 -3.8 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS12785 -1.1 -3.8 Rrf2 family transcriptional regulator compare
BPHYT_RS28930 -1.1 -1.2 chromosome partitioning protein ParA compare
BPHYT_RS13645 -1.1 -9.2 threonine--tRNA ligase compare
BPHYT_RS29920 -1.1 -1.3 hypothetical protein compare
BPHYT_RS16840 -1.1 -2.9 transketolase compare
BPHYT_RS33920 -1.1 -6.7 type II citrate synthase compare
BPHYT_RS08125 -1.1 -6.3 ATPase compare
BPHYT_RS17525 -1.1 -1.1 glutaredoxin compare
BPHYT_RS14380 -1.1 -5.8 elongation factor 4 compare
BPHYT_RS04370 -1.1 -2.0 glycosyl transferase compare
BPHYT_RS01625 -1.1 -2.3 chemotaxis protein CheY compare
BPHYT_RS12990 -1.1 -1.8 iron transporter compare
BPHYT_RS23540 -1.1 -1.5 RND transporter compare
BPHYT_RS02690 -1.0 -6.5 protoheme IX farnesyltransferase compare
BPHYT_RS26025 -1.0 -1.1 hypothetical protein compare
BPHYT_RS15615 -1.0 -2.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS34805 -1.0 -5.0 ABC transporter compare
BPHYT_RS12725 -1.0 -7.4 regulator compare
BPHYT_RS04095 -1.0 -1.4 SAM-dependent methyltransferase PhcB compare
BPHYT_RS16675 -1.0 -1.5 dihydroorotase compare
BPHYT_RS03645 -1.0 -1.8 tRNA dimethylallyltransferase compare
BPHYT_RS17890 -1.0 -1.3 shikimate kinase compare
BPHYT_RS05290 -1.0 -1.4 hypothetical protein compare
BPHYT_RS09330 -1.0 -6.1 phytoene synthase compare
BPHYT_RS09445 -1.0 -3.8 trigger factor compare
BPHYT_RS17760 -0.9 -4.1 ABC transporter permease compare
BPHYT_RS13200 -0.9 -2.1 molybdopterin binding oxidoreductase compare
BPHYT_RS18320 -0.9 -5.4 orotate phosphoribosyltransferase compare
BPHYT_RS15290 -0.9 -2.3 tRNA-Arg compare
BPHYT_RS01960 -0.9 -2.6 cytochrome C compare
BPHYT_RS12055 -0.9 -7.3 phosphoenolpyruvate synthase compare
BPHYT_RS11480 -0.9 -3.0 heme ABC transporter ATP-binding protein compare
BPHYT_RS14190 -0.9 -5.4 carbamoyl phosphate synthase large subunit compare
BPHYT_RS17445 -0.9 -3.0 GTP-binding protein YchF compare
BPHYT_RS26300 -0.9 -2.0 ATP-dependent DNA ligase compare
BPHYT_RS34270 -0.9 -2.9 LysR family transcriptional regulator compare
BPHYT_RS17920 -0.9 -1.4 protein CyaY compare
BPHYT_RS23875 -0.9 -1.2 sugar ABC transporter ATP-binding protein compare
BPHYT_RS18590 -0.9 -0.9 hypothetical protein compare
BPHYT_RS06530 -0.9 -1.7 membrane protein compare
BPHYT_RS06175 -0.8 -2.8 LPS biosynthesis compare
BPHYT_RS01115 -0.8 -1.6 hypothetical protein compare
BPHYT_RS10345 -0.8 -1.0 flagellar motor protein MotB compare
BPHYT_RS28625 -0.8 -1.6 major facilitator transporter compare
BPHYT_RS06350 -0.8 -1.2 chemotaxis protein CheY compare
BPHYT_RS35885 -0.8 -3.6 hypothetical protein compare
BPHYT_RS04920 -0.8 -2.2 aspartate 1-decarboxylase compare
BPHYT_RS12510 -0.8 -1.4 RNA-binding protein compare
BPHYT_RS08060 -0.8 -3.4 ribosome maturation factor RimP compare
BPHYT_RS15950 -0.8 -4.7 tyrosine recombinase XerD compare
BPHYT_RS04335 -0.8 -1.6 membrane protein compare
BPHYT_RS17745 -0.8 -3.2 toluene tolerance family protein compare
BPHYT_RS19305 -0.8 -4.3 ATP-dependent DNA helicase Rep compare
BPHYT_RS01455 -0.8 -0.8 peptide deformylase compare
BPHYT_RS30590 -0.8 -2.4 transcriptional regulator compare
BPHYT_RS08235 -0.8 -0.9 nucleoprotein, Hfg, host factor I compare
BPHYT_RS01955 -0.8 -2.2 hypothetical protein compare
BPHYT_RS06375 -0.8 -2.7 ribonuclease compare
BPHYT_RS06600 -0.8 -1.5 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS09810 -0.8 -1.8 hypothetical protein compare
BPHYT_RS14400 -0.8 -2.7 anti-sigma factor compare
BPHYT_RS05300 -0.8 -2.3 polyketide cyclase compare
BPHYT_RS17380 -0.8 -4.4 ribulose-phosphate 3-epimerase compare
BPHYT_RS03640 -0.8 -2.4 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS17945 -0.8 -1.5 cytochrome C biogenesis protein compare
BPHYT_RS21340 -0.7 -2.8 2OG-Fe(II) oxygenase compare
BPHYT_RS21370 -0.7 -2.2 glyoxalase compare
BPHYT_RS06405 -0.7 -3.6 phosphoribosylamine--glycine ligase compare
BPHYT_RS18340 -0.7 -1.1 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS14135 -0.7 -1.8 phosphate transporter permease subunit PtsA compare
BPHYT_RS33950 -0.7 -4.6 GntR family transcriptional regulator compare
BPHYT_RS20590 -0.7 -1.6 methionine sulfoxide reductase A compare
BPHYT_RS22530 -0.7 -1.1 N5,N10-methylene tetrahydromethanopterin reductase compare
BPHYT_RS22265 -0.7 -1.2 hypothetical protein compare
BPHYT_RS00055 -0.7 -1.2 hypothetical protein compare
BPHYT_RS08615 -0.7 -1.1 hypothetical protein compare
BPHYT_RS21460 -0.7 -1.8 UDP-N-acetylglucosamine 2-epimerase compare
BPHYT_RS20780 -0.7 -2.3 acyl-CoA dehydrogenase compare
BPHYT_RS17755 -0.7 -3.1 ABC transporter substrate-binding protein compare
BPHYT_RS30845 -0.7 -1.7 polyketide cyclase compare
BPHYT_RS02525 -0.7 -4.9 membrane protein compare
BPHYT_RS34605 -0.7 -2.0 transcriptional regulator compare
BPHYT_RS33990 -0.7 -0.7 ATPase compare
BPHYT_RS16435 -0.7 -5.0 alcohol dehydrogenase compare
BPHYT_RS10760 -0.7 -1.8 major facilitator transporter compare
BPHYT_RS16245 -0.7 -1.9 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS04285 -0.7 -1.4 rhamnosyltransferase compare
BPHYT_RS00770 -0.7 -0.9 conjugal transfer protein TraC compare
BPHYT_RS03365 -0.7 -2.0 NUDIX hydrolase compare
BPHYT_RS10685 -0.7 -1.9 LysR family transcriptional regulator compare
BPHYT_RS25820 -0.7 -1.4 sugar ABC transporter compare
BPHYT_RS31040 -0.7 -2.1 sugar transporter compare
BPHYT_RS33130 -0.7 -1.6 transcriptional regulator compare
BPHYT_RS09500 -0.7 -2.8 glucose-6-phosphate isomerase compare
BPHYT_RS35405 -0.6 -1.9 hypothetical protein compare
BPHYT_RS33125 -0.6 -1.4 hypothetical protein compare
BPHYT_RS10540 -0.6 -1.0 secretion protein compare
BPHYT_RS07475 -0.6 -1.3 nitrate reductase compare
BPHYT_RS35080 -0.6 -2.2 short-chain dehydrogenase compare
BPHYT_RS10185 -0.6 -2.2 MarR family transcriptional regulator compare
BPHYT_RS29345 -0.6 -1.5 lipoyl synthase compare
BPHYT_RS19260 -0.6 -0.8 hypothetical protein compare
BPHYT_RS33515 -0.6 -3.1 porin compare
BPHYT_RS07255 -0.6 -1.5 4-oxalocrotonate decarboxylase compare
BPHYT_RS02680 -0.6 -4.1 cytochrome C oxidase subunit I compare
BPHYT_RS17630 -0.6 -2.9 ubiquinol-cytochrome C reductase compare
BPHYT_RS30485 -0.6 -0.9 ABC transporter ATP-binding protein compare
BPHYT_RS00685 -0.6 -1.2 transcriptional regulator compare
BPHYT_RS25095 -0.6 -1.8 AraC family transcriptional regulator compare
BPHYT_RS21495 -0.6 -0.8 ABC transporter compare
BPHYT_RS33620 -0.6 -2.1 transcriptional regulator compare
BPHYT_RS02685 -0.6 -3.1 cytochrome C oxidase subunit I compare
BPHYT_RS14140 -0.6 -1.4 phosphate transporter permease subunit PstC compare
BPHYT_RS32395 -0.6 -0.8 hypothetical protein compare
BPHYT_RS10765 -0.6 -2.2 amidase compare
BPHYT_RS31305 -0.6 -0.9 alcohol dehydrogenase compare
BPHYT_RS16430 -0.6 -5.0 cytochrome C compare
BPHYT_RS12535 -0.6 -0.9 membrane protein compare
BPHYT_RS09435 -0.6 -1.7 MarR family transcriptional regulator compare
BPHYT_RS32880 -0.6 -0.7 alanine acetyltransferase compare
BPHYT_RS29320 -0.6 -1.0 histidine kinase compare
BPHYT_RS12985 -0.6 -0.8 amino acid acetyltransferase compare
BPHYT_RS04340 -0.6 -1.9 hypothetical protein compare
BPHYT_RS20185 -0.6 -1.0 sugar transferase compare
BPHYT_RS15710 -0.6 -1.0 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS15325 -0.6 -1.9 ribonuclease PH compare
BPHYT_RS16905 -0.6 -3.1 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS06400 -0.6 -3.4 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS23430 -0.6 -1.4 bifunctional D-altronate/D-mannonate dehydratase compare
BPHYT_RS20100 -0.6 -3.2 sensor histidine kinase compare
BPHYT_RS34545 -0.6 -1.2 transcriptional regulator compare
BPHYT_RS24745 -0.6 -2.0 transcriptional regulator compare
BPHYT_RS06410 -0.6 -2.2 transcriptional regulator compare
BPHYT_RS23210 -0.6 -1.0 MFS transporter compare
BPHYT_RS34320 -0.6 -1.4 DNA-binding protein compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in pH experiments