Experiment set2IT059 for Burkholderia phytofirmans PsJN

Compare to:

LB, pH5

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS32210 +1.2 0.8 hypothetical protein compare
BPHYT_RS28535 +1.1 1.7 response regulator receiver compare
BPHYT_RS26525 +1.1 2.3 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS18835 +1.0 1.2 flagellar biosynthesis protein FliR compare
BPHYT_RS07425 +1.0 1.1 hypothetical protein compare
BPHYT_RS00690 +0.9 1.6 transcriptional regulator compare
BPHYT_RS03015 +0.9 1.4 aldolase compare
BPHYT_RS10750 +0.9 1.6 LysR family transcriptional regulator compare
BPHYT_RS09850 +0.9 2.0 molybdopterin oxidoreductase compare
BPHYT_RS25075 +0.9 1.8 AraC family transcriptional regulator compare
BPHYT_RS06335 +0.9 1.6 CopG family transcriptional regulator compare
BPHYT_RS29015 +0.8 2.3 RND transporter compare
BPHYT_RS19985 +0.8 1.3 CoA-transferase compare
BPHYT_RS32860 +0.8 1.3 hypothetical protein compare
BPHYT_RS06105 +0.8 0.9 hypothetical protein compare
BPHYT_RS11810 +0.8 1.7 LysR family transcriptional regulator compare
BPHYT_RS28215 +0.8 1.6 D-ribose transporter ATP binding protein compare
BPHYT_RS13160 +0.8 1.7 membrane protein compare
BPHYT_RS22860 +0.8 1.2 chemotaxis protein CheY compare
BPHYT_RS08190 +0.8 1.4 type II secretion system protein compare
BPHYT_RS31050 +0.8 1.2 epimerase compare
BPHYT_RS25770 +0.8 1.8 hypothetical protein compare
BPHYT_RS10120 +0.8 1.8 membrane protein compare
BPHYT_RS20775 +0.8 1.3 3-ketoacyl-ACP reductase compare
BPHYT_RS23830 +0.8 2.2 acetyl-CoA hydrolase compare
BPHYT_RS23460 +0.8 1.2 AraC family transcriptional regulator compare
BPHYT_RS00955 +0.7 2.4 DNA polymerase compare
BPHYT_RS28575 +0.7 1.1 transcriptional regulator compare
BPHYT_RS10690 +0.7 2.1 Rieske (2Fe-2S) protein compare
BPHYT_RS25470 +0.7 1.2 alkylhydroperoxidase compare
BPHYT_RS01790 +0.7 5.9 LuxR family transcriptional regulator compare
BPHYT_RS01795 +0.7 4.8 histidine kinase compare
BPHYT_RS25565 +0.7 1.7 hypothetical protein compare
BPHYT_RS00740 +0.7 2.2 hypothetical protein compare
BPHYT_RS18780 +0.7 5.5 flagellar motor switch protein FliG compare
BPHYT_RS09815 +0.7 1.6 malate synthase compare
BPHYT_RS11825 +0.7 1.1 cytosine deaminase compare
BPHYT_RS35665 +0.7 1.2 ABC transporter permease compare
BPHYT_RS31125 +0.7 1.8 hypothetical protein compare
BPHYT_RS30490 +0.7 0.9 2-haloalkanoic acid dehalogenase compare
BPHYT_RS35635 +0.7 1.6 nucleoside 2-deoxyribosyltransferase compare
BPHYT_RS26555 +0.7 1.6 multidrug MFS transporter compare
BPHYT_RS18750 +0.7 3.1 flagellar biosynthetic protein FlhB compare
BPHYT_RS11050 +0.7 1.5 molecular chaperone compare
BPHYT_RS18825 +0.7 3.2 flagellar biosynthesis protein FliP compare
BPHYT_RS28680 +0.7 1.5 porin compare
BPHYT_RS11265 +0.7 1.6 hypothetical protein compare
BPHYT_RS13080 +0.7 1.3 hypothetical protein compare
BPHYT_RS29550 +0.7 2.4 RND transporter compare
BPHYT_RS09545 +0.7 1.6 peptide methionine sulfoxide reductase compare
BPHYT_RS26920 +0.7 2.7 major facilitator transporter compare
BPHYT_RS12550 +0.6 1.2 GTP-binding protein HflX compare
BPHYT_RS31400 +0.6 1.2 methyl-accepting chemotaxis protein compare
BPHYT_RS11555 +0.6 1.3 allantoinase compare
BPHYT_RS00115 +0.6 1.4 acetaldehyde dehydrogenase compare
BPHYT_RS17405 +0.6 1.1 indole-3-glycerol phosphate synthase compare
BPHYT_RS36385 +0.6 1.0 TetR family transcriptional regulator compare
BPHYT_RS05910 +0.6 2.8 hypothetical protein compare
BPHYT_RS24010 +0.6 1.7 L-histidine ABC transporter, permease component 2 (from data) compare
BPHYT_RS10040 +0.6 0.9 hypothetical protein compare
BPHYT_RS04890 +0.6 1.4 cobalamin biosynthesis protein CobD compare
BPHYT_RS32365 +0.6 2.2 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS30655 +0.6 1.7 O-methyltransferase compare
BPHYT_RS33460 +0.6 0.9 protocatechuate 3,4-dioxygenase subunit alpha compare
BPHYT_RS22400 +0.6 1.3 hypothetical protein compare
BPHYT_RS30995 +0.6 0.8 glucose-1-phosphate thymidylyltransferase compare
BPHYT_RS20665 +0.6 0.8 LysR family transcriptional regulator compare
BPHYT_RS30300 +0.6 1.6 FMN reductase compare
BPHYT_RS04595 +0.6 1.3 cytoplasmic protein compare
BPHYT_RS03900 +0.6 0.9 phospholipid-binding protein compare
BPHYT_RS31515 +0.6 1.9 agmatinase compare
BPHYT_RS34505 +0.6 1.3 hypothetical protein compare
BPHYT_RS35735 +0.6 1.1 nitroreductase compare
BPHYT_RS28090 +0.6 2.0 ferredoxin compare
BPHYT_RS07040 +0.6 2.5 asparaginase compare
BPHYT_RS22815 +0.6 1.2 TonB-denpendent receptor compare
BPHYT_RS32690 +0.6 1.1 acyl-CoA dehydrogenase compare
BPHYT_RS10670 +0.6 1.2 catechol 1,2-dioxygenase compare
BPHYT_RS06135 +0.6 2.9 hypothetical protein compare
BPHYT_RS08715 +0.6 2.3 adenylyl-sulfate kinase compare
BPHYT_RS26930 +0.6 3.4 mechanosensitive ion channel protein compare
BPHYT_RS05570 +0.6 1.4 hypothetical protein compare
BPHYT_RS18775 +0.6 4.6 flagellar M-ring protein FliF compare
BPHYT_RS11040 +0.6 1.0 GntR family transcriptional regulator compare
BPHYT_RS36150 +0.6 1.6 hypothetical protein compare
BPHYT_RS28830 +0.6 0.8 LysR family transcriptional regulator compare
BPHYT_RS34975 +0.6 1.2 L-aspartate dehydrogenase compare
BPHYT_RS24005 +0.6 2.1 L-histidine ABC transporter, permease component 1 (from data) compare
BPHYT_RS24590 +0.6 0.9 DeoR faimly transcriptional regulator compare
BPHYT_RS26465 +0.6 1.0 metallophosphoesterase compare
BPHYT_RS03925 +0.5 1.6 LysR family transcriptional regulator compare
BPHYT_RS01985 +0.5 1.8 hypothetical protein compare
BPHYT_RS36590 +0.5 2.3 hypothetical protein compare
BPHYT_RS33630 +0.5 1.7 chromate transporter compare
BPHYT_RS23445 +0.5 0.9 hexuronate transporter compare
BPHYT_RS08165 +0.5 1.1 pilus assembly protein TadE compare
BPHYT_RS25165 +0.5 1.6 HTH-type transcriptional regulator BetI compare
BPHYT_RS29855 +0.5 0.8 protein-tyrosine-phosphatase compare
BPHYT_RS35315 +0.5 1.0 threonyl-tRNA synthetase compare
BPHYT_RS27330 +0.5 1.0 hypothetical protein compare
BPHYT_RS09365 +0.5 1.5 cytochrome C2 compare
BPHYT_RS29720 +0.5 1.1 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
BPHYT_RS11795 +0.5 1.0 membrane protein compare
BPHYT_RS34930 +0.5 1.1 Rieske (2Fe-2S) protein compare
BPHYT_RS28860 +0.5 0.9 haloacid dehalogenase compare
BPHYT_RS14180 +0.5 2.1 membrane protein compare
BPHYT_RS28000 +0.5 1.1 permease compare
BPHYT_RS26715 +0.5 1.1 GTP-binding protein compare
BPHYT_RS32750 +0.5 1.0 lipoprotein compare
BPHYT_RS33845 +0.5 1.3 bacteriocin production protein compare
BPHYT_RS31815 +0.5 1.5 hypothetical protein compare
BPHYT_RS17490 +0.5 1.4 haloacid dehalogenase compare
BPHYT_RS22130 +0.5 3.1 FAD-linked oxidase compare
BPHYT_RS07665 +0.5 1.7 hypothetical protein compare
BPHYT_RS19025 +0.5 3.6 transcriptional regulator compare
BPHYT_RS14255 +0.5 4.3 ABC transporter compare
BPHYT_RS33870 +0.5 2.4 DNA methylase N-4 compare
BPHYT_RS33050 +0.5 1.4 LuxR family transcriptional regulator compare
BPHYT_RS09040 +0.5 1.6 MerR family transcriptional regulator compare
BPHYT_RS11000 +0.5 1.7 glutathione S-transferase compare
BPHYT_RS20840 +0.5 1.0 beta-lactamase compare
BPHYT_RS31690 +0.5 1.6 hypothetical protein compare
BPHYT_RS21050 +0.5 2.0 aldehyde-activating protein compare
BPHYT_RS11095 +0.5 1.5 glycosyl transferase compare
BPHYT_RS17450 +0.5 2.1 glycerophosphodiester phosphodiesterase compare
BPHYT_RS34620 +0.5 2.0 hypothetical protein compare
BPHYT_RS04425 +0.5 1.3 UDP-phosphate galactose phosphotransferase compare
BPHYT_RS10465 +0.5 2.4 hypothetical protein compare
BPHYT_RS25800 +0.5 1.3 sugar ABC transporter permease compare
BPHYT_RS14250 +0.5 3.5 glycosyl transferase compare
BPHYT_RS29105 +0.5 1.4 class V aminotransferase compare
BPHYT_RS26265 +0.5 2.3 FAD-dependent pyridine nucleotide-disulfide oxidoreductase compare
BPHYT_RS36440 +0.5 2.0 hypothetical protein compare
BPHYT_RS18745 +0.5 2.9 coniferyl aldehyde dehydrogenase compare
BPHYT_RS18890 +0.5 3.5 flagellar basal body rod protein FlgC compare
BPHYT_RS30380 +0.5 2.1 glyoxalase compare
BPHYT_RS15530 +0.5 2.0 glutathione ABC transporter permease compare
BPHYT_RS35215 +0.5 0.6 dehydrogenase compare
BPHYT_RS28600 +0.5 1.3 ArsC family transcriptional regulator compare
BPHYT_RS18790 +0.5 3.3 ATP synthase compare
BPHYT_RS10695 +0.5 1.0 aromatic-ring-hydroxylating dioxygenase subunit beta compare
BPHYT_RS08665 +0.5 0.7 hypothetical protein compare
BPHYT_RS05065 +0.5 1.8 DNA mismatch repair protein MutS compare
BPHYT_RS35615 +0.5 1.2 hypothetical protein compare
BPHYT_RS10475 +0.5 0.9 mammalian cell entry protein compare
BPHYT_RS23610 +0.5 1.6 alpha/beta hydrolase compare
BPHYT_RS25450 +0.5 0.8 membrane protein compare
BPHYT_RS02295 +0.5 1.2 hypothetical protein compare
BPHYT_RS27060 +0.5 1.1 photosystem reaction center subunit H compare
BPHYT_RS03030 +0.5 2.7 cytochrome C compare
BPHYT_RS24955 +0.5 1.2 cytochrome C peroxidase compare
BPHYT_RS07410 +0.5 1.2 glucosamine--fructose-6-phosphate aminotransferase compare
BPHYT_RS08130 +0.5 0.6 transposase compare
BPHYT_RS14345 +0.5 2.2 beta-hexosaminidase compare
BPHYT_RS03065 +0.5 1.1 LuxR family transcriptional regulator compare
BPHYT_RS09245 +0.5 1.3 ABC transporter ATP-binding protein compare
BPHYT_RS16090 +0.5 0.9 hypothetical protein compare
BPHYT_RS15980 +0.5 2.4 pirin compare
BPHYT_RS23495 +0.5 2.0 thioredoxin reductase compare
BPHYT_RS21585 +0.5 1.7 short-chain dehydrogenase compare
BPHYT_RS25375 +0.5 2.7 lipid-transfer protein compare
BPHYT_RS01395 +0.5 1.6 tRNA-Arg compare
BPHYT_RS10285 +0.5 1.6 hypothetical protein compare
BPHYT_RS22250 +0.5 1.3 D-amino acid dehydrogenase compare
BPHYT_RS10410 +0.5 1.9 monooxygenase compare
BPHYT_RS03390 +0.5 1.5 glyoxalase compare
BPHYT_RS04010 +0.5 0.9 glycosyl transferase compare
BPHYT_RS21725 +0.5 0.9 taurine ABC transporter substrate-binding protein compare
BPHYT_RS25845 +0.5 0.9 RND transporter MFP subunit compare
BPHYT_RS26975 +0.5 1.0 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS03280 +0.5 1.1 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS00570 +0.5 2.6 hypothetical protein compare
BPHYT_RS28900 +0.5 1.2 2-oxo-hepta-3-ene-1,7-dioic acid hydratase compare
BPHYT_RS27085 +0.5 1.2 alkylhydroperoxidase compare
BPHYT_RS11245 +0.5 1.7 ATPase compare
BPHYT_RS25560 +0.5 1.0 RNA polymerase sigma factor compare
BPHYT_RS29410 +0.5 2.4 HPr kinase compare
BPHYT_RS08670 +0.5 2.5 hypothetical protein compare
BPHYT_RS09715 +0.5 2.1 UDP-glucose 6-dehydrogenase compare
BPHYT_RS18365 +0.5 1.3 oxidoreductase compare
BPHYT_RS15585 +0.4 1.4 acetyltransferase compare
BPHYT_RS21615 +0.4 1.4 FMN-dependent NADH-azoreductase compare
BPHYT_RS05825 +0.4 1.2 hypothetical protein compare
BPHYT_RS15490 +0.4 2.2 coproporphyrinogen III oxidase compare
BPHYT_RS07095 +0.4 1.2 LysR family transcriptional regulator compare
BPHYT_RS10350 +0.4 1.9 hypothetical protein compare
BPHYT_RS13470 +0.4 0.6 arylsulfate sulfotransferase compare
BPHYT_RS34850 +0.4 1.7 acylphosphatase compare
BPHYT_RS35645 +0.4 2.8 porin compare
BPHYT_RS06055 +0.4 2.6 von Willebrand factor A compare
BPHYT_RS06930 +0.4 2.2 hypothetical protein compare
BPHYT_RS24755 +0.4 2.1 catalase compare
BPHYT_RS33540 +0.4 1.8 hypothetical protein compare
BPHYT_RS28365 +0.4 1.0 Germin subfamily 1 member 15 compare
BPHYT_RS33980 +0.4 3.3 aconitate hydratase compare
BPHYT_RS07960 +0.4 1.1 hypothetical protein compare
BPHYT_RS06270 +0.4 2.2 glyoxalase compare
BPHYT_RS15435 +0.4 1.4 ethyl tert-butyl ether degradation EthD compare
BPHYT_RS18935 +0.4 2.8 flagellar biosynthesis regulator FlhF compare
BPHYT_RS35675 +0.4 1.2 short-chain dehydrogenase compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in pH experiments