Experiment set2IT058 for Burkholderia phytofirmans PsJN

Compare to:

LB, pH5

200 most important genes:

  gene name fitness t score description  
BPHYT_RS14855 -4.2 -4.0 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS02860 -3.8 -1.9 membrane protein compare
BPHYT_RS23840 -3.1 -4.0 methyltransferase compare
BPHYT_RS17670 -3.0 -7.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS15415 -3.0 -17.9 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS17530 -2.8 -6.7 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS17690 -2.8 -17.0 imidazole glycerol phosphate synthase compare
BPHYT_RS02610 -2.7 -6.3 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS17685 -2.7 -12.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS06610 -2.6 -3.0 triosephosphate isomerase compare
BPHYT_RS17680 -2.6 -4.9 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS12530 -2.5 -5.2 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS17700 -2.5 -5.8 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS17675 -2.5 -4.0 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS17715 -2.4 -9.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS16710 -2.2 -2.2 LysR family transcriptional regulator compare
BPHYT_RS33580 -2.2 -5.2 geranyltranstransferase compare
BPHYT_RS16835 -2.0 -8.6 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS16270 -2.0 -3.8 phosphoglycerate kinase compare
BPHYT_RS15620 -2.0 -4.4 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS17520 -2.0 -6.7 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS36275 -2.0 -2.5 hypothetical protein compare
BPHYT_RS14865 -1.9 -5.2 UDP-glucose 6-dehydrogenase compare
BPHYT_RS12465 -1.9 -3.4 inositol monophosphatase compare
BPHYT_RS16255 -1.9 -5.7 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS08565 -1.8 -2.5 dihydroorotate dehydrogenase compare
BPHYT_RS02590 -1.8 -7.2 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS02865 -1.7 -2.9 hypothetical protein compare
BPHYT_RS03400 -1.6 -1.7 ATP-dependent DNA helicase RecG compare
BPHYT_RS14400 -1.5 -2.8 anti-sigma factor compare
BPHYT_RS06900 -1.5 -6.0 aspartate aminotransferase compare
BPHYT_RS02285 -1.5 -6.7 cell division protein compare
BPHYT_RS06985 -1.5 -3.5 fumarate hydratase compare
BPHYT_RS34780 -1.5 -4.0 phytoene synthase compare
BPHYT_RS17920 -1.4 -1.8 protein CyaY compare
BPHYT_RS16840 -1.4 -2.5 transketolase compare
BPHYT_RS16675 -1.4 -1.9 dihydroorotase compare
BPHYT_RS23650 -1.4 -1.2 hypothetical protein compare
BPHYT_RS28930 -1.4 -1.3 chromosome partitioning protein ParA compare
BPHYT_RS17095 -1.4 -2.9 proline--tRNA ligase compare
BPHYT_RS14845 -1.3 -1.9 cysteine synthase compare
BPHYT_RS12845 -1.3 -9.5 ATPase compare
BPHYT_RS03645 -1.3 -2.6 tRNA dimethylallyltransferase compare
BPHYT_RS14755 -1.3 -3.4 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS12785 -1.3 -4.0 Rrf2 family transcriptional regulator compare
BPHYT_RS14380 -1.3 -4.3 elongation factor 4 compare
BPHYT_RS09330 -1.3 -8.5 phytoene synthase compare
BPHYT_RS18590 -1.3 -1.1 hypothetical protein compare
BPHYT_RS16175 -1.3 -2.6 hemolysin D compare
BPHYT_RS15710 -1.3 -1.7 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS04290 -1.3 -2.2 glycosyl transferase family 2 compare
BPHYT_RS26685 -1.3 -1.6 precorrin-8X methylmutase compare
BPHYT_RS25875 -1.2 -1.5 type III secretion protein compare
BPHYT_RS04965 -1.2 -5.5 ATP-binding protein compare
BPHYT_RS18705 -1.2 -2.2 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS23155 -1.2 -1.6 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) compare
BPHYT_RS08765 -1.2 -1.2 ABC transporter ATP-binding protein compare
BPHYT_RS17525 -1.2 -1.8 glutaredoxin compare
BPHYT_RS34805 -1.2 -7.2 ABC transporter compare
BPHYT_RS20095 -1.2 -1.2 transcriptional regulator compare
BPHYT_RS24665 -1.2 -2.3 ABC transporter permease compare
BPHYT_RS34810 -1.1 -4.0 RND transporter compare
BPHYT_RS03640 -1.1 -3.4 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS29485 -1.1 -2.4 phosphonate ABC transporter ATP-binding protein compare
BPHYT_RS29620 -1.1 -1.0 hypothetical protein compare
BPHYT_RS23875 -1.1 -1.3 sugar ABC transporter ATP-binding protein compare
BPHYT_RS29015 -1.1 -1.7 RND transporter compare
BPHYT_RS06375 -1.1 -4.9 ribonuclease compare
BPHYT_RS08825 -1.1 -1.2 tartronate semialdehyde reductase compare
BPHYT_RS30490 -1.1 -0.9 2-haloalkanoic acid dehalogenase compare
BPHYT_RS33610 -1.1 -2.0 DNA polymerase I compare
BPHYT_RS34815 -1.0 -1.8 ABC transporter compare
BPHYT_RS02690 -1.0 -7.1 protoheme IX farnesyltransferase compare
BPHYT_RS01485 -1.0 -0.9 histidine kinase compare
BPHYT_RS06990 -1.0 -1.6 membrane protein compare
BPHYT_RS33920 -1.0 -5.2 type II citrate synthase compare
BPHYT_RS17975 -1.0 -2.0 cytochrome C biogenesis protein compare
BPHYT_RS32475 -1.0 -2.1 dihydroxyacetone kinase compare
BPHYT_RS32880 -1.0 -1.0 alanine acetyltransferase compare
BPHYT_RS08850 -1.0 -2.2 transcriptional regulator compare
BPHYT_RS13605 -1.0 -0.9 tRNA-Pro compare
BPHYT_RS06405 -1.0 -5.5 phosphoribosylamine--glycine ligase compare
BPHYT_RS14450 -1.0 -3.6 hypothetical protein compare
BPHYT_RS05320 -1.0 -1.6 beta-lactamase compare
BPHYT_RS08125 -1.0 -5.4 ATPase compare
BPHYT_RS16245 -1.0 -4.2 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS15075 -0.9 -1.9 dihydrokaempferol 4-reductase compare
BPHYT_RS12060 -0.9 -1.9 hypothetical protein compare
BPHYT_RS13645 -0.9 -7.8 threonine--tRNA ligase compare
BPHYT_RS14195 -0.9 -2.4 carbamoyl phosphate synthase small subunit compare
BPHYT_RS17445 -0.9 -3.7 GTP-binding protein YchF compare
BPHYT_RS11765 -0.9 -1.0 polyamine ABC transporter permease compare
BPHYT_RS28965 -0.9 -1.0 hypothetical protein compare
BPHYT_RS27090 -0.9 -2.3 aldo/keto reductase compare
BPHYT_RS22180 -0.9 -1.8 hypothetical protein compare
BPHYT_RS17745 -0.9 -4.6 toluene tolerance family protein compare
BPHYT_RS14190 -0.9 -5.7 carbamoyl phosphate synthase large subunit compare
BPHYT_RS04335 -0.9 -1.7 membrane protein compare
BPHYT_RS35310 -0.9 -1.7 GCN5 family N-acetyltransferase compare
BPHYT_RS08060 -0.9 -3.7 ribosome maturation factor RimP compare
BPHYT_RS30825 -0.9 -1.6 extradiol dioxygenase compare
BPHYT_RS33990 -0.9 -0.9 ATPase compare
BPHYT_RS03240 -0.9 -2.2 formate dehydrogenase accessory protein FdhD compare
BPHYT_RS19735 -0.9 -2.4 hypothetical protein compare
BPHYT_RS09480 -0.9 -1.2 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS29750 -0.9 -3.0 phosphoenolpyruvate phosphomutase compare
BPHYT_RS19435 -0.9 -2.8 16S rRNA methyltransferase compare
BPHYT_RS08960 -0.9 -1.1 threonine synthase compare
BPHYT_RS04370 -0.9 -1.5 glycosyl transferase compare
BPHYT_RS15615 -0.8 -3.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS28705 -0.8 -1.3 IclR family transcriptional regulator compare
BPHYT_RS05620 -0.8 -1.2 CsbD family protein compare
BPHYT_RS12725 -0.8 -5.8 regulator compare
BPHYT_RS31620 -0.8 -2.8 mandelate racemase compare
BPHYT_RS18320 -0.8 -5.2 orotate phosphoribosyltransferase compare
BPHYT_RS06530 -0.8 -1.2 membrane protein compare
BPHYT_RS14140 -0.8 -2.8 phosphate transporter permease subunit PstC compare
BPHYT_RS09765 -0.8 -1.2 G-D-S-L family lipolytic protein compare
BPHYT_RS04455 -0.8 -1.0 glycosyl transferase compare
BPHYT_RS12055 -0.8 -6.3 phosphoenolpyruvate synthase compare
BPHYT_RS16880 -0.8 -0.7 malic enzyme compare
BPHYT_RS00685 -0.8 -2.2 transcriptional regulator compare
BPHYT_RS01965 -0.8 -1.3 tRNA-Ala compare
BPHYT_RS17760 -0.8 -2.7 ABC transporter permease compare
BPHYT_RS11915 -0.8 -2.0 hypothetical protein compare
BPHYT_RS10065 -0.8 -1.1 cytochrome C oxidase subunit I compare
BPHYT_RS16345 -0.8 -3.4 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS04625 -0.8 -1.1 urea ABC transporter ATP-binding protein compare
BPHYT_RS06175 -0.8 -3.2 LPS biosynthesis compare
BPHYT_RS36145 -0.8 -1.8 hypothetical protein compare
BPHYT_RS04955 -0.8 -1.8 methionyl-tRNA synthetase compare
BPHYT_RS16470 -0.8 -3.2 DeoR faimly transcriptional regulator compare
BPHYT_RS24965 -0.8 -1.2 hypothetical protein compare
BPHYT_RS12840 -0.8 -3.0 pyruvate dehydrogenase compare
BPHYT_RS10345 -0.8 -0.9 flagellar motor protein MotB compare
BPHYT_RS06685 -0.7 -1.5 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS07960 -0.7 -1.3 hypothetical protein compare
BPHYT_RS23910 -0.7 -1.4 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS00325 -0.7 -1.4 hypothetical protein compare
BPHYT_RS30485 -0.7 -1.0 ABC transporter ATP-binding protein compare
BPHYT_RS34565 -0.7 -1.2 chemotaxis protein compare
BPHYT_RS28305 -0.7 -1.2 protein tyrosine phosphatase compare
BPHYT_RS07600 -0.7 -2.4 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS13390 -0.7 -0.9 IclR family transcriptional regulator compare
BPHYT_RS12990 -0.7 -2.0 iron transporter compare
BPHYT_RS16905 -0.7 -4.2 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS32155 -0.7 -3.0 type IV secretion system protein VirB11 compare
BPHYT_RS35235 -0.7 -2.0 amino acid transporter compare
BPHYT_RS10165 -0.7 -1.2 transcriptional regulator compare
BPHYT_RS24480 -0.7 -2.8 molybdopterin binding oxidoreductase compare
BPHYT_RS33515 -0.7 -4.7 porin compare
BPHYT_RS06400 -0.7 -4.1 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS16435 -0.7 -6.0 alcohol dehydrogenase compare
BPHYT_RS26855 -0.7 -2.2 carboxyvinyl-carboxyphosphonate phosphorylmutase compare
BPHYT_RS31590 -0.7 -1.5 hypothetical protein compare
BPHYT_RS17265 -0.7 -0.9 cell division protein compare
BPHYT_RS22355 -0.7 -1.3 HAD family hydrolase compare
BPHYT_RS23670 -0.7 -1.9 AsnC family transcriptional regulator compare
BPHYT_RS10540 -0.7 -1.3 secretion protein compare
BPHYT_RS27690 -0.7 -1.8 carbamate kinase compare
BPHYT_RS12510 -0.7 -1.1 RNA-binding protein compare
BPHYT_RS02135 -0.7 -1.0 glyoxylate reductase compare
BPHYT_RS17885 -0.7 -3.1 3-dehydroquinate synthase compare
BPHYT_RS03830 -0.7 -1.8 hypothetical protein compare
BPHYT_RS13895 -0.7 -2.0 sugar ABC transporter substrate-binding protein compare
BPHYT_RS02650 -0.7 -1.1 membrane protein compare
BPHYT_RS25480 -0.7 -1.5 hypothetical protein compare
BPHYT_RS16290 -0.7 -0.8 hypothetical protein compare
BPHYT_RS00055 -0.7 -2.0 hypothetical protein compare
BPHYT_RS16250 -0.7 -0.8 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS00150 -0.7 -1.6 DEAD/DEAH box helicase compare
BPHYT_RS12925 -0.7 -0.8 exodeoxyribonuclease III compare
BPHYT_RS34745 -0.7 -1.0 hypothetical protein compare
BPHYT_RS02595 -0.7 -0.8 sulfurtransferase compare
BPHYT_RS01455 -0.7 -0.6 peptide deformylase compare
BPHYT_RS03740 -0.7 -1.5 hypothetical protein compare
BPHYT_RS30160 -0.7 -2.0 AraC family transcriptional regulator compare
BPHYT_RS04890 -0.7 -1.0 cobalamin biosynthesis protein CobD compare
BPHYT_RS22420 -0.7 -1.0 membrane protein compare
BPHYT_RS05335 -0.6 -1.4 AraC family transcriptional regulator compare
BPHYT_RS31755 -0.6 -1.4 amino acid ABC transporter ATPase compare
BPHYT_RS16340 -0.6 -3.5 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS35530 -0.6 -1.5 arsenate reductase compare
BPHYT_RS01960 -0.6 -1.1 cytochrome C compare
BPHYT_RS34675 -0.6 -1.9 DNA-binding protein compare
BPHYT_RS06600 -0.6 -1.2 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS20705 -0.6 -2.6 Chase2 sensor protein compare
BPHYT_RS00725 -0.6 -2.0 hypothetical protein compare
BPHYT_RS00225 -0.6 -1.5 hypothetical protein compare
BPHYT_RS03365 -0.6 -2.4 NUDIX hydrolase compare
BPHYT_RS34490 -0.6 -0.8 hypothetical protein compare
BPHYT_RS29110 -0.6 -2.0 DNA-directed DNA polymerase compare
BPHYT_RS33850 -0.6 -1.0 sporulation protein compare
BPHYT_RS36400 -0.6 -0.9 hypothetical protein compare
BPHYT_RS28485 -0.6 -1.0 GntR family transcriptional regulator compare
BPHYT_RS01625 -0.6 -2.0 chemotaxis protein CheY compare
BPHYT_RS32225 -0.6 -1.3 hypothetical protein compare
BPHYT_RS17755 -0.6 -3.1 ABC transporter substrate-binding protein compare
BPHYT_RS27430 -0.6 -1.2 LysR family transcriptional regulator compare
BPHYT_RS06555 -0.6 -3.0 ketol-acid reductoisomerase compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in pH experiments