Experiment set2IT057 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

D-Mannose carbon source

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS18945 +1.4 9.8 LacI family transcriptional regulator compare
CA265_RS08555 +1.2 6.4 CoA transferase compare
CA265_RS08525 +1.2 10.1 IclR family transcriptional regulator compare
CA265_RS23145 +1.2 6.1 hypothetical protein compare
CA265_RS08570 +1.1 1.7 dehydratase compare
CA265_RS08565 +1.1 4.9 oxidoreductase compare
CA265_RS15070 +1.0 5.0 hypothetical protein compare
CA265_RS02045 +1.0 2.8 hypothetical protein compare
CA265_RS15895 +1.0 4.7 hypothetical protein compare
CA265_RS18780 +1.0 3.5 YicC family protein compare
CA265_RS14705 +1.0 7.0 hypothetical protein compare
CA265_RS01265 +0.9 4.3 GntR family transcriptional regulator compare
CA265_RS08550 +0.9 4.8 carnitine dehydratase compare
CA265_RS10740 +0.9 6.0 DNA-binding response regulator compare
CA265_RS24170 +0.9 6.8 MFS transporter compare
CA265_RS18805 +0.9 1.4 hypothetical protein compare
CA265_RS18115 +0.9 5.9 gliding motility protein GldN compare
CA265_RS10745 +0.9 7.4 diguanylate cyclase compare
CA265_RS03295 +0.8 6.8 gliding motility-associated ABC transporter substrate-binding protein GldG compare
CA265_RS08535 +0.8 4.9 glycosylase compare
CA265_RS11610 +0.8 0.8 RNA-binding protein S4 compare
CA265_RS17680 +0.8 5.0 hypothetical protein compare
CA265_RS23505 +0.8 3.3 biopolymer transporter ExbD compare
CA265_RS12665 +0.8 1.9 cold-shock protein compare
CA265_RS22800 +0.8 6.1 glycosyl transferase compare
CA265_RS08670 +0.8 3.2 sulfatase compare
CA265_RS20350 +0.8 4.8 gliding motility lipoprotein GldH compare
CA265_RS20320 +0.8 7.2 hypothetical protein compare
CA265_RS20525 +0.8 1.6 hypothetical protein compare
CA265_RS08560 +0.8 3.0 ABC transporter substrate-binding protein compare
CA265_RS23305 +0.8 1.5 hypothetical protein compare
CA265_RS19940 +0.8 6.4 hypothetical protein compare
CA265_RS22805 +0.7 5.7 glycosyl transferase compare
CA265_RS16005 +0.7 2.9 hypothetical protein compare
CA265_RS08540 +0.7 5.1 glycoside hydrolase family 2 compare
CA265_RS06585 +0.7 4.4 hypothetical protein compare
CA265_RS20315 +0.7 6.3 hypothetical protein compare
CA265_RS21000 +0.7 3.1 ribosome silencing factor compare
CA265_RS19640 +0.7 2.7 hypothetical protein compare
CA265_RS08545 +0.7 3.9 ABC transporter substrate-binding protein compare
CA265_RS16325 +0.7 1.5 CsbD family protein compare
CA265_RS17685 +0.7 4.3 hypothetical protein compare
CA265_RS22690 +0.7 5.2 hypothetical protein compare
CA265_RS03115 +0.7 1.5 peroxiredoxin compare
CA265_RS21565 +0.7 1.1 cold-shock protein compare
CA265_RS15085 +0.7 4.7 hypothetical protein compare
CA265_RS19050 +0.7 2.0 acylphosphatase compare
CA265_RS10985 +0.7 4.0 hypothetical protein compare
CA265_RS13985 +0.6 1.4 hypothetical protein compare
CA265_RS15050 +0.6 2.7 lysine transporter LysE compare
CA265_RS18090 +0.6 5.7 gliding motility protein compare
CA265_RS21060 +0.6 1.8 hypothetical protein compare
CA265_RS19945 +0.6 2.2 hypothetical protein compare
CA265_RS10470 +0.6 4.4 amidinotransferase compare
CA265_RS22165 +0.6 1.7 hypothetical protein compare
CA265_RS19760 +0.6 1.8 hypothetical protein compare
CA265_RS23265 +0.6 2.3 iron-binding protein compare
CA265_RS04680 +0.6 2.7 AraC family transcriptional regulator compare
CA265_RS24720 +0.6 5.0 multidrug transporter compare
CA265_RS18120 +0.6 4.5 gliding motility protein GldM compare
CA265_RS23520 +0.6 4.2 phosphate ABC transporter substrate-binding protein compare
CA265_RS17720 +0.6 4.7 hypothetical protein compare
CA265_RS09720 +0.6 3.5 transglycosylase compare
CA265_RS23635 +0.6 4.6 gliding motility lipoprotein GldJ compare
CA265_RS04325 +0.6 2.1 hypothetical protein compare
CA265_RS18990 +0.6 5.2 cell surface protein SprA compare
CA265_RS15115 +0.6 3.7 porin compare
CA265_RS16295 +0.6 4.1 LacI family transcriptional regulator compare
CA265_RS23525 +0.5 4.0 hypothetical protein compare
CA265_RS23515 +0.5 2.1 hypothetical protein compare
CA265_RS04330 +0.5 2.6 transcriptional regulator compare
CA265_RS01165 +0.5 1.9 hypothetical protein compare
CA265_RS11030 +0.5 1.1 twin-arginine translocase TatA/TatE family subunit compare
CA265_RS01270 +0.5 3.6 hypothetical protein compare
CA265_RS19540 +0.5 4.5 tail-specific protease compare
CA265_RS08660 +0.5 1.2 glyoxalase compare
CA265_RS03260 +0.5 3.5 multidrug ABC transporter ATP-binding protein compare
CA265_RS19030 +0.5 2.9 hypothetical protein compare
CA265_RS22080 +0.5 1.3 hypothetical protein compare
CA265_RS10600 +0.5 3.2 RNA polymerase subunit sigma-24 compare
CA265_RS18855 +0.5 2.1 hypothetical protein compare
CA265_RS00490 +0.5 0.8 hypothetical protein compare
CA265_RS18125 +0.5 2.6 gliding motility protein GldL compare
CA265_RS23120 +0.5 1.6 hypothetical protein compare
CA265_RS03255 +0.5 3.1 glycerophosphodiester phosphodiesterase compare
CA265_RS11920 +0.5 1.2 histone H1 compare
CA265_RS19140 +0.5 1.4 tRNA-Ile compare
CA265_RS22790 +0.5 3.0 hypothetical protein compare
CA265_RS03290 +0.5 3.4 gliding motility-associated ABC transporter permease subunit GldF compare
CA265_RS14670 +0.5 3.2 hypothetical protein compare
CA265_RS00880 +0.5 3.2 hypothetical protein compare
CA265_RS21555 +0.5 1.8 hypothetical protein compare
CA265_RS18130 +0.5 3.7 gliding motility-associated lipoprotein compare
CA265_RS03835 +0.5 0.8 hypothetical protein compare
CA265_RS08880 +0.5 3.3 chromate transporter compare
CA265_RS21360 +0.4 1.7 hypothetical protein compare
CA265_RS09050 +0.4 2.4 N-acetylmuramoyl-L-alanine amidase compare
CA265_RS00885 +0.4 2.5 hypothetical protein compare
CA265_RS23650 +0.4 3.0 hypothetical protein compare
CA265_RS18570 +0.4 1.9 hypothetical protein compare
CA265_RS20815 +0.4 1.6 hypothetical protein compare
CA265_RS05620 +0.4 0.7 hypothetical protein compare
CA265_RS04780 +0.4 1.4 polyketide cyclase compare
CA265_RS16515 +0.4 0.9 hypothetical protein compare
CA265_RS15010 +0.4 1.8 hypothetical protein compare
CA265_RS02965 +0.4 2.4 hypothetical protein compare
CA265_RS16615 +0.4 1.0 hypothetical protein compare
CA265_RS24940 +0.4 1.3 hypothetical protein compare
CA265_RS23510 +0.4 1.6 energy transducer TonB compare
CA265_RS01860 +0.4 2.0 type I glyceraldehyde-3-phosphate dehydrogenase compare
CA265_RS13225 +0.4 2.5 exonuclease compare
CA265_RS03075 +0.4 2.3 hypothetical protein compare
CA265_RS17915 +0.4 1.3 hypothetical protein compare
CA265_RS16995 +0.4 1.3 hypothetical protein compare
CA265_RS21365 +0.4 1.3 thiol reductase thioredoxin compare
CA265_RS17710 +0.4 2.4 hypothetical protein compare
CA265_RS19740 +0.4 1.7 gliding motility lipoprotein GldD compare
CA265_RS00025 +0.4 1.3 hypothetical protein compare
CA265_RS20900 +0.4 2.1 hypoxanthine phosphoribosyltransferase compare
CA265_RS23985 +0.4 2.5 gliding motility lipoprotein GldB compare
CA265_RS22980 +0.4 1.4 hypothetical protein compare
CA265_RS04835 +0.4 2.4 dihydrodipicolinate synthetase compare
CA265_RS00335 +0.4 0.6 hypothetical protein compare
CA265_RS13940 +0.4 2.2 hypothetical protein compare
CA265_RS24005 +0.4 1.9 OsmC family peroxiredoxin compare
CA265_RS09835 +0.4 1.3 hypothetical protein compare
CA265_RS04130 +0.4 1.3 hypothetical protein compare
CA265_RS04955 +0.4 1.9 arsenate reductase (glutaredoxin) compare
CA265_RS25195 +0.4 2.7 hypothetical protein compare
CA265_RS00875 +0.4 2.2 alkaline phosphatase compare
CA265_RS14885 +0.4 2.4 hypothetical protein compare
CA265_RS24605 +0.4 0.9 hypothetical protein compare
CA265_RS08970 +0.4 2.1 hypothetical protein compare
CA265_RS10035 +0.4 1.6 transcriptional regulator compare
CA265_RS24820 +0.4 1.7 adenylate cyclase compare
CA265_RS13790 +0.4 1.7 L-rhamnose mutarotase compare
CA265_RS21715 +0.4 2.5 hypothetical protein compare
CA265_RS23835 +0.4 1.8 hypothetical protein compare
CA265_RS06770 +0.4 2.3 hypothetical protein compare
CA265_RS06930 +0.4 1.6 hypothetical protein compare
CA265_RS17315 +0.4 0.9 hypothetical protein compare
CA265_RS19445 +0.4 2.4 hypothetical protein compare
CA265_RS11670 +0.4 2.4 hypothetical protein compare
CA265_RS11990 +0.4 1.0 hypothetical protein compare
CA265_RS25260 +0.4 1.2 hypothetical protein compare
CA265_RS10475 +0.4 1.9 amidinotransferase compare
CA265_RS16585 +0.4 0.9 hypothetical protein compare
CA265_RS17705 +0.3 2.7 hypothetical protein compare
CA265_RS21435 +0.3 1.7 hypothetical protein compare
CA265_RS13695 +0.3 2.6 hypothetical protein compare
CA265_RS14935 +0.3 3.0 hypothetical protein compare
CA265_RS16785 +0.3 0.6 50S ribosomal protein L17 compare
CA265_RS08295 +0.3 1.5 hypothetical protein compare
CA265_RS23180 +0.3 1.1 peroxiredoxin compare
CA265_RS21315 +0.3 1.1 hypothetical protein compare
CA265_RS00285 +0.3 1.2 hypothetical protein compare
CA265_RS08530 +0.3 2.5 alpha-L-rhamnosidase compare
CA265_RS16655 +0.3 2.3 peptidase M42 compare
CA265_RS18030 +0.3 1.8 hypothetical protein compare
CA265_RS13390 +0.3 2.5 hypothetical protein compare
CA265_RS08770 +0.3 1.6 hypothetical protein compare
CA265_RS25365 +0.3 2.2 glycerol acyltransferase compare
CA265_RS00380 +0.3 1.6 hypothetical protein compare
CA265_RS25295 +0.3 2.5 DoxX family protein compare
CA265_RS22310 +0.3 1.3 superoxide dismutase compare
CA265_RS19350 +0.3 2.2 ATP-dependent exodnase (exonuclease V) alpha subunit - helicase superfamily I member compare
CA265_RS05615 +0.3 1.8 hypothetical protein compare
CA265_RS09035 +0.3 1.3 anti-anti-sigma factor compare
CA265_RS19650 +0.3 1.8 DNA-3-methyladenine glycosylase compare
CA265_RS15890 +0.3 2.3 DNA-binding protein compare
CA265_RS21220 +0.3 1.6 hypothetical protein compare
CA265_RS09355 +0.3 2.0 endonuclease V compare
CA265_RS12850 +0.3 1.2 3-oxoacyl-ACP synthase compare
CA265_RS07680 +0.3 2.6 DNA polymerase III subunit epsilon compare
CA265_RS18575 +0.3 2.5 hypothetical protein compare
CA265_RS20975 +0.3 2.1 hypothetical protein compare
CA265_RS07535 +0.3 0.8 ATPase compare
CA265_RS02990 +0.3 1.9 mannosyltransferase compare
CA265_RS05350 +0.3 2.5 hypothetical protein compare
CA265_RS24025 +0.3 1.1 hypothetical protein compare
CA265_RS13850 +0.3 2.5 alpha-glucosidase compare
CA265_RS14740 +0.3 2.0 biopolymer transporter ExbB compare
CA265_RS22450 +0.3 0.9 GntR family transcriptional regulator compare
CA265_RS16150 +0.3 1.8 UDP-diphosphatase compare
CA265_RS04845 +0.3 2.5 MFS transporter compare
CA265_RS12940 +0.3 1.6 peptidase dimerization domain protein compare
CA265_RS08815 +0.3 2.1 hypothetical protein compare
CA265_RS06590 +0.3 2.1 acetyl-CoA acetyltransferase compare
CA265_RS11900 +0.3 1.2 hypothetical protein compare
CA265_RS22035 +0.3 0.9 hypothetical protein compare
CA265_RS05395 +0.3 1.2 heme oxygenase compare
CA265_RS14110 +0.3 1.6 ATP-binding protein compare
CA265_RS19725 +0.3 1.8 hypothetical protein compare
CA265_RS20565 +0.3 1.7 metallophosphoesterase compare
CA265_RS14550 +0.3 1.9 hypothetical protein compare
CA265_RS19330 +0.3 1.8 dTDP-4-dehydrorhamnose reductase compare
CA265_RS22775 +0.3 2.1 glycosyl hydrolase compare
CA265_RS10390 +0.3 1.2 hypothetical protein compare
CA265_RS24700 +0.3 1.5 hypothetical protein compare
CA265_RS11770 +0.3 2.1 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D-Mannose in Pedobacter sp. GW460-11-11-14-LB5

For carbon source D-Mannose across organisms