Experiment set2IT057 for Cupriavidus basilensis FW507-4G11

Compare to:

D-Fructose carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS16265 -8.2 -5.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS05860 -6.6 -4.5 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS14400 -6.2 -4.3 isopropylmalate isomerase compare
RR42_RS16255 -6.1 -8.4 sulfate adenylyltransferase compare
RR42_RS14365 -6.1 -4.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS30655 -5.8 -5.6 LysR family transcriptional regulator compare
RR42_RS16275 -5.7 -3.9 membrane protein compare
RR42_RS06485 -5.4 -8.2 chorismate synthase compare
RR42_RS01160 -5.4 -11.9 homoserine O-acetyltransferase compare
RR42_RS18305 -5.3 -4.9 anthranilate phosphoribosyltransferase compare
RR42_RS33255 -5.1 -4.9 protein-tyrosine phosphatase compare
RR42_RS18300 -5.0 -6.5 anthranilate synthase subunit II compare
RR42_RS07555 -5.0 -3.4 potassium transporter Kup compare
RR42_RS19010 -5.0 -8.9 shikimate kinase compare
RR42_RS14390 -4.9 -5.8 3-isopropylmalate dehydratase compare
RR42_RS16250 -4.9 -8.6 sulfate adenylyltransferase compare
RR42_RS15905 -4.8 -13.0 phosphoenolpyruvate carboxylase compare
RR42_RS06120 -4.7 -2.3 transcriptional regulator compare
RR42_RS14385 -4.7 -7.5 3-isopropylmalate dehydrogenase compare
RR42_RS33260 -4.6 -8.2 multidrug MFS transporter compare
RR42_RS30660 -4.6 -8.6 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS04475 -4.5 -8.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS18295 -4.4 -12.8 anthranilate synthase component I compare
RR42_RS14320 -4.3 -7.2 O-succinylhomoserine sulfhydrylase compare
RR42_RS33240 -4.3 -17.2 GDP-L-fucose synthase compare
RR42_RS01385 -4.3 -3.9 5,10-methylenetetrahydrofolate reductase compare
RR42_RS37400 -4.3 -1.8 6-phosphogluconolactonase compare
RR42_RS16270 -4.3 -11.3 sulfite reductase compare
RR42_RS20195 -4.2 -1.8 ATPase F0F1 compare
RR42_RS18990 -4.0 -18.8 glutamate synthase compare
RR42_RS12040 -4.0 -14.0 MFS transporter compare
RR42_RS17645 -4.0 -6.7 shikimate dehydrogenase compare
RR42_RS33250 -3.9 -8.7 tyrosine protein kinase compare
RR42_RS19005 -3.8 -6.5 3-dehydroquinate synthase compare
RR42_RS01290 -3.7 -6.2 thiamine biosynthesis protein ThiC compare
RR42_RS02705 -3.6 -3.1 Holliday junction DNA helicase RuvA compare
RR42_RS16245 -3.6 -4.6 uroporphyrin-III methyltransferase compare
RR42_RS15890 -3.5 -9.6 heme biosynthesis protein HemY compare
RR42_RS05955 -3.3 -2.0 hypothetical protein compare
RR42_RS01845 -3.3 -2.0 glycerol-3-phosphate dehydrogenase compare
RR42_RS33245 -3.2 -7.7 mannose-1-phosphate guanyltransferase compare
RR42_RS16280 -3.2 -4.2 transcriptional regulator compare
RR42_RS03375 -3.1 -9.3 glucose-6-phosphate dehydrogenase compare
RR42_RS15895 -3.1 -7.6 uroporphyrinogen III methyltransferase compare
RR42_RS04535 -3.1 -6.9 cysteine synthase compare
RR42_RS14360 -3.0 -1.7 tryptophan synthase subunit alpha compare
RR42_RS20205 -3.0 -4.0 chromosome partitioning protein compare
RR42_RS04460 -3.0 -5.0 chorismate mutase compare
RR42_RS33210 -2.9 -6.4 teichoic acid biosynthesis protein compare
RR42_RS03385 -2.9 -4.5 sugar kinase compare
RR42_RS03365 -2.9 -4.8 fructose ABC transporter, permease component (FrcC) (from data) compare
RR42_RS33235 -2.9 -5.8 GDP-mannose 4,6-dehydratase compare
RR42_RS06095 -2.8 -3.3 hypothetical protein compare
RR42_RS03360 -2.7 -9.8 fructose ABC transporter, ATPase component (FrcA) (from data) compare
RR42_RS07605 -2.7 -6.4 poly-beta-hydroxybutyrate polymerase compare
RR42_RS17105 -2.6 -12.3 Clp protease ClpX compare
RR42_RS05990 -2.6 -8.6 aromatic amino acid aminotransferase compare
RR42_RS04700 -2.6 -2.1 ribonuclease G compare
RR42_RS33355 -2.5 -6.7 membrane protein compare
RR42_RS04895 -2.5 -12.3 serine/threonine protein phosphatase compare
RR42_RS18855 -2.4 -3.3 preprotein translocase compare
RR42_RS15410 -2.4 -6.7 membrane protein compare
RR42_RS18985 -2.4 -5.3 glutamate synthase compare
RR42_RS18825 -2.4 -3.3 ubiquinol-cytochrome C reductase compare
RR42_RS26900 -2.3 -3.9 enoyl-CoA hydratase compare
RR42_RS18425 -2.3 -1.7 hypothetical protein compare
RR42_RS07360 -2.3 -4.7 ATPase compare
RR42_RS18140 -2.2 -2.2 MarR family transcriptional regulator compare
RR42_RS17060 -2.1 -14.1 histidine kinase compare
RR42_RS07365 -2.1 -3.8 pyruvate dehydrogenase compare
RR42_RS06125 -2.0 -2.6 phosphogluconate dehydratase compare
RR42_RS18815 -2.0 -8.2 cytochrome C compare
RR42_RS03380 -2.0 -3.1 glucose-6-phosphate isomerase compare
RR42_RS02045 -2.0 -9.8 GTPase compare
RR42_RS18820 -1.9 -6.7 cytochrome B compare
RR42_RS17720 -1.9 -3.5 sugar kinase compare
RR42_RS21220 -1.9 -2.4 iron transporter FeoB compare
RR42_RS03355 -1.9 -7.8 N-acylmannosamine kinase compare
RR42_RS12550 -1.9 -4.6 hypothetical protein compare
RR42_RS11770 -1.9 -2.9 cyclase compare
RR42_RS03370 -1.8 -2.4 fructose ABC transporter, substrate-binding component (FrcB) (from data) compare
RR42_RS17055 -1.8 -8.3 LuxR family transcriptional regulator compare
RR42_RS36400 -1.8 -1.6 hypothetical protein compare
RR42_RS18850 -1.8 -2.2 preprotein translocase subunit TatC compare
RR42_RS12925 -1.8 -3.1 ATPase compare
RR42_RS16240 -1.8 -1.0 cobalamin biosynthesis protein CbiX compare
RR42_RS35875 -1.7 -7.1 UDP-galactose-4-epimerase compare
RR42_RS01380 -1.7 -2.0 membrane protein compare
RR42_RS24605 -1.7 -7.6 TetR family transcriptional regulator compare
RR42_RS03080 -1.7 -4.3 recombinase RecA compare
RR42_RS13800 -1.7 -5.6 formyltetrahydrofolate deformylase compare
RR42_RS13040 -1.6 -5.3 iron transporter compare
RR42_RS18270 -1.6 -5.0 murein transglycosylase compare
RR42_RS16260 -1.6 -1.0 phosphoadenosine phosphosulfate reductase compare
RR42_RS19090 -1.5 -2.0 cytochrome C compare
RR42_RS07565 -1.5 -7.7 transcription accessory protein compare
RR42_RS02500 -1.5 -2.2 TetR family transcriptional regulator compare
RR42_RS35140 -1.5 -2.6 2-hydroxylaminobenzoate mutase compare
RR42_RS01485 -1.4 -2.2 phosphonate transporter compare
RR42_RS26905 -1.4 -6.1 methylcrotonoyl-CoA carboxylase compare
RR42_RS33195 -1.4 -8.1 UDP-sugar lipid carrier transferase compare
RR42_RS09015 -1.4 -3.1 trigger factor compare
RR42_RS04470 -1.4 -3.2 prephenate dehydrogenase compare
RR42_RS08945 -1.4 -1.7 hypothetical protein compare
RR42_RS12015 -1.4 -2.7 dihydrolipoamide acyltransferase compare
RR42_RS02775 -1.4 -2.9 molecular chaperone SurA compare
RR42_RS33215 -1.3 -7.6 transferase compare
RR42_RS18670 -1.3 -3.7 metal-dependent hydrolase compare
RR42_RS03095 -1.3 -1.8 succinyl-CoA synthetase subunit beta compare
RR42_RS15415 -1.3 -2.2 membrane protein compare
RR42_RS28860 -1.3 -4.1 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45) (from data) compare
RR42_RS16675 -1.3 -1.5 hypothetical protein compare
RR42_RS15090 -1.3 -4.5 DNA helicase compare
RR42_RS08210 -1.3 -1.3 hypothetical protein compare
RR42_RS35220 -1.3 -1.6 peptide ABC transporter ATP-binding protein compare
RR42_RS17390 -1.2 -4.6 ATP-dependent DNA helicase RecG compare
RR42_RS01885 -1.2 -4.9 cytochrome C oxidase assembly protein compare
RR42_RS02860 -1.2 -1.5 hypothetical protein compare
RR42_RS01915 -1.2 -4.0 cytochrome C oxidase subunit I compare
RR42_RS22230 -1.2 -1.4 hypothetical protein compare
RR42_RS02210 -1.2 -1.4 succinate dehydrogenase compare
RR42_RS04955 -1.2 -2.1 hypothetical protein compare
RR42_RS29785 -1.2 -2.9 hypothetical protein compare
RR42_RS01875 -1.2 -4.6 cytochrome C oxidase subunit II compare
RR42_RS30640 -1.2 -4.8 DNA mismatch repair protein MutT compare
RR42_RS12615 -1.2 -1.9 LexA family transcriptional regulator compare
RR42_RS00955 -1.2 -4.5 hydroxymethylglutaryl-CoA lyase compare
RR42_RS01720 -1.2 -2.1 membrane protein compare
RR42_RS13910 -1.1 -3.6 glutamate racemase compare
RR42_RS04770 -1.1 -1.3 methylglyoxal synthase compare
RR42_RS08175 -1.1 -1.1 hypothetical protein compare
RR42_RS15450 -1.1 -2.8 Tol system periplasmic component YbgF compare
RR42_RS31850 -1.1 -1.6 2-keto-4-pentenoate hydratase compare
RR42_RS34650 -1.1 -3.8 LacI family transcriptional regulator compare
RR42_RS14790 -1.1 -5.0 cobalamin biosynthesis protein CobD compare
RR42_RS14985 -1.1 -1.5 30S ribosomal protein S21 compare
RR42_RS07815 -1.1 -3.4 glutamine ABC transporter ATP-binding protein compare
RR42_RS01255 -1.1 -6.3 lauroyl acyltransferase compare
RR42_RS36105 -1.1 -2.6 MarR family transcriptional regulator compare
RR42_RS18945 -1.1 -3.2 toluene tolerance protein compare
RR42_RS05500 -1.1 -1.2 preprotein translocase subunit SecG compare
RR42_RS18485 -1.1 -1.1 glutaredoxin compare
RR42_RS19445 -1.1 -4.4 TetR family transcriptional regulator compare
RR42_RS25785 -1.1 -1.5 TetR family transcriptional regulator compare
RR42_RS17050 -1.0 -4.3 phosphoribosylglycinamide formyltransferase compare
RR42_RS07860 -1.0 -2.5 acetyltransferase compare
RR42_RS01895 -1.0 -3.3 MFS transporter compare
RR42_RS16525 -1.0 -3.1 anti-sigma factor compare
RR42_RS01630 -1.0 -1.1 branched-chain amino acid ABC transporter ATP-binding protein compare
RR42_RS15245 -1.0 -1.3 alpha/beta hydrolase compare
RR42_RS31530 -1.0 -2.4 histidine kinase compare
RR42_RS01920 -1.0 -2.2 protoheme IX farnesyltransferase compare
RR42_RS17930 -1.0 -2.3 RNA pyrophosphohydrolase compare
RR42_RS32520 -1.0 -1.8 cytochrome C compare
RR42_RS05420 -1.0 -3.5 membrane protein compare
RR42_RS32235 -1.0 -3.4 hopanoid biosynthesis associated radical SAM protein HpnH compare
RR42_RS18430 -1.0 -2.1 prevent-host-death protein compare
RR42_RS20310 -1.0 -0.9 copper-binding protein compare
RR42_RS02785 -1.0 -2.1 dimethyladenosine transferase compare
RR42_RS11520 -1.0 -2.2 ABC transporter ATP-binding protein compare
RR42_RS22150 -1.0 -2.6 thiol-disulfide isomerase compare
RR42_RS26590 -0.9 -1.5 hypothetical protein compare
RR42_RS16950 -0.9 -2.8 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
RR42_RS05430 -0.9 -3.0 DNA-directed RNA polymerase sigma-70 factor compare
RR42_RS33650 -0.9 -2.2 IclR family transcriptional regulator compare
RR42_RS00420 -0.9 -3.3 hypothetical protein compare
RR42_RS05935 -0.9 -3.1 membrane protein compare
RR42_RS20440 -0.9 -1.3 histidine kinase compare
RR42_RS26450 -0.9 -3.1 histidinol dehydrogenase compare
RR42_RS17555 -0.9 -1.0 hypothetical protein compare
RR42_RS01775 -0.9 -4.1 glutamate--cysteine ligase compare
RR42_RS05670 -0.9 -1.7 urease subunit beta compare
RR42_RS27950 -0.9 -1.7 peptidylprolyl isomerase compare
RR42_RS15200 -0.9 -1.8 phenazine biosynthesis protein PhzC/PhzF compare
RR42_RS34940 -0.9 -2.2 bb3-type cytochrome oxidase subunit IV compare
RR42_RS08365 -0.9 -3.9 hypothetical protein compare
RR42_RS00615 -0.9 -4.2 recombinase XerC compare
RR42_RS27700 -0.9 -1.7 hypothetical protein compare
RR42_RS06325 -0.9 -1.1 serine O-acetyltransferase compare
RR42_RS16220 -0.9 -1.0 DNA polymerase III subunit chi compare
RR42_RS35895 -0.9 -2.2 PadR family transcriptional regulator compare
RR42_RS33200 -0.9 -3.6 hypothetical protein compare
RR42_RS01505 -0.9 -1.4 tRNA-Cys compare
RR42_RS25755 -0.9 -2.0 IclR family transcriptional regulator compare
RR42_RS16510 -0.8 -1.7 hypothetical protein compare
RR42_RS01260 -0.8 -5.2 lauroyl acyltransferase compare
RR42_RS18965 -0.8 -5.7 ABC transporter permease compare
RR42_RS12050 -0.8 -4.0 DNA polymerase compare
RR42_RS34395 -0.8 -1.3 hypothetical protein compare
RR42_RS05665 -0.8 -1.0 urease accessory protein UreJ compare
RR42_RS01355 -0.8 -2.4 biotin attachment protein compare
RR42_RS06875 -0.8 -1.9 hypothetical protein compare
RR42_RS00715 -0.8 -1.6 ferritin compare
RR42_RS06630 -0.8 -1.2 integration host factor subunit alpha compare
RR42_RS15035 -0.8 -2.0 ZIP zinc transporter compare
RR42_RS07575 -0.8 -2.5 hypothetical protein compare
RR42_RS33205 -0.8 -4.5 UDP-glucose 6-dehydrogenase compare
RR42_RS10365 -0.8 -1.8 ABC transporter compare
RR42_RS31435 -0.8 -1.0 hypothetical protein compare
RR42_RS11785 -0.8 -1.4 NfeD-like family protein 1 compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source D-Fructose in Cupriavidus basilensis FW507-4G11

For carbon source D-Fructose across organisms