Experiment set2IT057 for Burkholderia phytofirmans PsJN

Compare to:

LB, pH4

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17690 -7.7 -9.2 imidazole glycerol phosphate synthase compare
BPHYT_RS16210 -7.6 -5.3 peptidase compare
BPHYT_RS17675 -6.0 -3.2 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS17685 -6.0 -11.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS13770 -5.9 -12.6 RND transporter compare
BPHYT_RS14855 -5.7 -3.5 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS34815 -5.5 -3.8 ABC transporter compare
BPHYT_RS14050 -5.5 -8.5 UDP pyrophosphate phosphatase compare
BPHYT_RS17760 -5.3 -9.9 ABC transporter permease compare
BPHYT_RS34810 -5.2 -6.3 RND transporter compare
BPHYT_RS23985 -5.2 -9.4 carbohydrate porin compare
BPHYT_RS14865 -5.0 -3.9 UDP-glucose 6-dehydrogenase compare
BPHYT_RS04370 -5.0 -2.6 glycosyl transferase compare
BPHYT_RS17670 -5.0 -5.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS13785 -4.9 -5.9 membrane protein compare
BPHYT_RS17680 -4.9 -5.5 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS15920 -4.8 -13.3 argininosuccinate synthase compare
BPHYT_RS08960 -4.8 -3.0 threonine synthase compare
BPHYT_RS11390 -4.7 -9.5 penicillin-binding protein 1A compare
BPHYT_RS34780 -4.6 -5.1 phytoene synthase compare
BPHYT_RS01625 -4.5 -5.4 chemotaxis protein CheY compare
BPHYT_RS15620 -4.5 -5.9 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS06190 -4.4 -6.4 heptosyltransferase compare
BPHYT_RS15915 -4.3 -15.4 ornithine carbamoyltransferase compare
BPHYT_RS17715 -4.1 -6.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS34805 -4.1 -9.9 ABC transporter compare
BPHYT_RS12530 -4.0 -4.2 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS17745 -4.0 -11.6 toluene tolerance family protein compare
BPHYT_RS33580 -3.9 -6.4 geranyltranstransferase compare
BPHYT_RS15075 -3.8 -3.6 dihydrokaempferol 4-reductase compare
BPHYT_RS17700 -3.8 -3.6 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS22190 -3.6 -2.3 nucleoid-structuring protein H-NS compare
BPHYT_RS17765 -3.5 -6.6 toluene ABC transporter ATP-binding protein compare
BPHYT_RS14845 -3.4 -3.7 cysteine synthase compare
BPHYT_RS08850 -3.4 -2.8 transcriptional regulator compare
BPHYT_RS14190 -3.3 -8.6 carbamoyl phosphate synthase large subunit compare
BPHYT_RS29750 -3.3 -7.8 phosphoenolpyruvate phosphomutase compare
BPHYT_RS23840 -3.3 -5.0 methyltransferase compare
BPHYT_RS02285 -3.1 -9.4 cell division protein compare
BPHYT_RS02860 -3.1 -1.9 membrane protein compare
BPHYT_RS06175 -3.0 -9.6 LPS biosynthesis compare
BPHYT_RS21350 -3.0 -3.8 ADP-glucose pyrophosphorylase compare
BPHYT_RS01485 -3.0 -1.5 histidine kinase compare
BPHYT_RS21335 -3.0 -3.3 CDP-alcohol phosphatidyltransferase compare
BPHYT_RS13775 -2.9 -6.7 fusaric acid resistance protein compare
BPHYT_RS17755 -2.9 -5.1 ABC transporter substrate-binding protein compare
BPHYT_RS17920 -2.9 -2.3 protein CyaY compare
BPHYT_RS02610 -2.7 -4.9 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS16175 -2.7 -3.5 hemolysin D compare
BPHYT_RS21340 -2.7 -6.4 2OG-Fe(II) oxygenase compare
BPHYT_RS04290 -2.6 -3.0 glycosyl transferase family 2 compare
BPHYT_RS16710 -2.6 -2.3 LysR family transcriptional regulator compare
BPHYT_RS01435 -2.5 -19.6 LysR family transcriptional regulator compare
BPHYT_RS06610 -2.4 -3.1 triosephosphate isomerase compare
BPHYT_RS06530 -2.4 -2.9 membrane protein compare
BPHYT_RS09330 -2.4 -12.1 phytoene synthase compare
BPHYT_RS12990 -2.3 -4.3 iron transporter compare
BPHYT_RS16270 -2.3 -6.3 phosphoglycerate kinase compare
BPHYT_RS29740 -2.3 -6.5 2-aminoethylphosphonate aminotransferase compare
BPHYT_RS29745 -2.2 -5.2 phosphonopyruvate decarboxylase compare
BPHYT_RS16835 -2.2 -8.2 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS15710 -2.2 -2.9 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS17265 -2.2 -1.9 cell division protein compare
BPHYT_RS04285 -2.1 -3.0 rhamnosyltransferase compare
BPHYT_RS16215 -2.1 -6.9 sensor histidine kinase compare
BPHYT_RS06900 -2.0 -7.6 aspartate aminotransferase compare
BPHYT_RS15615 -2.0 -2.8 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS09895 -1.9 -2.1 LysR family transcriptional regulator compare
BPHYT_RS06990 -1.9 -2.1 membrane protein compare
BPHYT_RS12785 -1.9 -2.8 Rrf2 family transcriptional regulator compare
BPHYT_RS33610 -1.9 -2.8 DNA polymerase I compare
BPHYT_RS02590 -1.9 -7.6 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS17945 -1.9 -2.5 cytochrome C biogenesis protein compare
BPHYT_RS09500 -1.8 -6.9 glucose-6-phosphate isomerase compare
BPHYT_RS33690 -1.8 -2.7 molybdate ABC transporter permease compare
BPHYT_RS12845 -1.7 -12.5 ATPase compare
BPHYT_RS23740 -1.7 -8.2 AraC family transcriptional regulator compare
BPHYT_RS03480 -1.7 -5.2 ferritin compare
BPHYT_RS04385 -1.7 -4.8 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS12465 -1.6 -3.2 inositol monophosphatase compare
BPHYT_RS17530 -1.6 -6.4 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS12840 -1.6 -3.1 pyruvate dehydrogenase compare
BPHYT_RS04335 -1.6 -1.8 membrane protein compare
BPHYT_RS26855 -1.6 -4.1 carboxyvinyl-carboxyphosphonate phosphorylmutase compare
BPHYT_RS08975 -1.6 -5.7 molybdenum cofactor biosynthesis protein MoaE compare
BPHYT_RS17520 -1.6 -4.9 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS15415 -1.6 -11.3 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS36385 -1.5 -1.2 TetR family transcriptional regulator compare
BPHYT_RS16290 -1.5 -1.5 hypothetical protein compare
BPHYT_RS02005 -1.5 -2.6 diguanylate phosphodiesterase compare
BPHYT_RS12055 -1.5 -11.5 phosphoenolpyruvate synthase compare
BPHYT_RS04965 -1.5 -7.0 ATP-binding protein compare
BPHYT_RS33695 -1.5 -3.6 molybdenum ABC transporter ATPase compare
BPHYT_RS16840 -1.5 -2.7 transketolase compare
BPHYT_RS02570 -1.5 -5.3 phosphocarrier protein HPr compare
BPHYT_RS14495 -1.4 -7.3 molybdopterin-guanine dinucleotide biosynthesis protein A compare
BPHYT_RS17100 -1.4 -5.7 RNA pyrophosphohydrolase compare
BPHYT_RS08965 -1.4 -4.6 molybdenum cofactor biosynthesis protein MoaA compare
BPHYT_RS14195 -1.4 -1.7 carbamoyl phosphate synthase small subunit compare
BPHYT_RS17890 -1.4 -1.6 shikimate kinase compare
BPHYT_RS16255 -1.4 -4.2 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS30485 -1.4 -1.6 ABC transporter ATP-binding protein compare
BPHYT_RS19535 -1.4 -5.4 XRE family transcriptional regulator compare
BPHYT_RS33645 -1.4 -4.3 homoserine kinase compare
BPHYT_RS02690 -1.4 -8.4 protoheme IX farnesyltransferase compare
BPHYT_RS03400 -1.4 -1.1 ATP-dependent DNA helicase RecG compare
BPHYT_RS02865 -1.4 -2.4 hypothetical protein compare
BPHYT_RS24910 -1.4 -8.3 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS01530 -1.4 -1.0 penicillin-binding protein 2 compare
BPHYT_RS20095 -1.3 -1.3 transcriptional regulator compare
BPHYT_RS02540 -1.3 -1.7 hypothetical protein compare
BPHYT_RS09445 -1.3 -4.5 trigger factor compare
BPHYT_RS03240 -1.3 -3.5 formate dehydrogenase accessory protein FdhD compare
BPHYT_RS12925 -1.3 -1.4 exodeoxyribonuclease III compare
BPHYT_RS24095 -1.3 -2.9 membrane protein compare
BPHYT_RS23650 -1.3 -1.1 hypothetical protein compare
BPHYT_RS13245 -1.3 -4.2 hypothetical protein compare
BPHYT_RS02525 -1.3 -5.7 membrane protein compare
BPHYT_RS09480 -1.3 -1.6 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS09315 -1.3 -1.2 chemotaxis protein CheY compare
BPHYT_RS06985 -1.3 -5.2 fumarate hydratase compare
BPHYT_RS03645 -1.3 -2.2 tRNA dimethylallyltransferase compare
BPHYT_RS30140 -1.2 -1.6 3-methylitaconate isomerase compare
BPHYT_RS34825 -1.2 -5.5 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS14715 -1.2 -5.8 molybdenum cofactor biosynthesis protein MogA compare
BPHYT_RS30145 -1.2 -3.3 aconitate hydratase compare
BPHYT_RS12615 -1.2 -1.7 dihydrodipicolinate synthase compare
BPHYT_RS06075 -1.2 -5.3 hypothetical protein compare
BPHYT_RS13390 -1.2 -1.2 IclR family transcriptional regulator compare
BPHYT_RS16880 -1.2 -1.0 malic enzyme compare
BPHYT_RS32860 -1.2 -1.1 hypothetical protein compare
BPHYT_RS33685 -1.2 -8.1 molybdate ABC transporter substrate-binding protein compare
BPHYT_RS02975 -1.2 -2.7 membrane protein compare
BPHYT_RS17240 -1.2 -1.3 cell division protein FtsW compare
BPHYT_RS09515 -1.2 -4.1 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS13605 -1.2 -1.0 tRNA-Pro compare
BPHYT_RS04890 -1.1 -1.4 cobalamin biosynthesis protein CobD compare
BPHYT_RS06555 -1.1 -7.7 ketol-acid reductoisomerase compare
BPHYT_RS03570 -1.1 -5.5 heat-inducible transcription repressor HrcA compare
BPHYT_RS25780 -1.1 -1.3 DeoR faimly transcriptional regulator compare
BPHYT_RS02595 -1.1 -1.3 sulfurtransferase compare
BPHYT_RS36220 -1.1 -1.3 hypothetical protein compare
BPHYT_RS06045 -1.1 -6.0 transaldolase compare
BPHYT_RS13200 -1.1 -1.5 molybdopterin binding oxidoreductase compare
BPHYT_RS12510 -1.1 -2.2 RNA-binding protein compare
BPHYT_RS17905 -1.1 -2.5 fimbrial assembly family protein compare
BPHYT_RS14490 -1.1 -8.8 molybdenum cofactor biosynthesis protein MoeA compare
BPHYT_RS02135 -1.1 -1.7 glyoxylate reductase compare
BPHYT_RS25520 -1.1 -3.6 TetR family transcriptional regulator compare
BPHYT_RS06195 -1.1 -1.9 membrane protein compare
BPHYT_RS24550 -1.1 -2.9 hypothetical protein compare
BPHYT_RS02640 -1.1 -8.2 cytochrome C oxidase compare
BPHYT_RS17165 -1.0 -2.8 cell division protein ZapD compare
BPHYT_RS19680 -1.0 -7.6 glutamate--cysteine ligase compare
BPHYT_RS24905 -1.0 -7.3 hypothetical protein compare
BPHYT_RS06400 -1.0 -4.2 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS10065 -1.0 -1.3 cytochrome C oxidase subunit I compare
BPHYT_RS08765 -1.0 -1.0 ABC transporter ATP-binding protein compare
BPHYT_RS22420 -1.0 -1.4 membrane protein compare
BPHYT_RS16675 -1.0 -2.1 dihydroorotase compare
BPHYT_RS21595 -1.0 -1.3 TetR family transcriptional regulator compare
BPHYT_RS19540 -1.0 -5.7 sensor histidine kinase compare
BPHYT_RS23910 -1.0 -1.7 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS04095 -1.0 -1.1 SAM-dependent methyltransferase PhcB compare
BPHYT_RS29520 -1.0 -0.9 hypothetical protein compare
BPHYT_RS05155 -0.9 -3.9 acetyltransferase GCN5 compare
BPHYT_RS12060 -0.9 -1.5 hypothetical protein compare
BPHYT_RS08665 -0.9 -0.9 hypothetical protein compare
BPHYT_RS01095 -0.9 -1.1 hypothetical protein compare
BPHYT_RS05185 -0.9 -6.0 chloride channel protein compare
BPHYT_RS29810 -0.9 -1.4 hexapeptide transferase compare
BPHYT_RS17885 -0.9 -4.2 3-dehydroquinate synthase compare
BPHYT_RS08565 -0.9 -1.6 dihydroorotate dehydrogenase compare
BPHYT_RS24315 -0.9 -1.8 phosphoribosyltransferase compare
BPHYT_RS14275 -0.9 -1.7 hypothetical protein compare
BPHYT_RS16340 -0.9 -4.0 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS21905 -0.9 -1.1 IclR family transcriptional regulator compare
BPHYT_RS16245 -0.9 -4.5 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS20520 -0.9 -1.2 transcriptional regulator compare
BPHYT_RS21970 -0.9 -2.0 nucleoside hydrolase compare
BPHYT_RS08945 -0.9 -3.3 hypothetical protein compare
BPHYT_RS02685 -0.9 -5.0 cytochrome C oxidase subunit I compare
BPHYT_RS10865 -0.9 -3.1 transporter compare
BPHYT_RS28040 -0.9 -1.9 acyl-CoA dehydrogenase compare
BPHYT_RS14390 -0.9 -3.2 peptidase compare
BPHYT_RS17095 -0.9 -1.7 proline--tRNA ligase compare
BPHYT_RS09145 -0.9 -4.5 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS04950 -0.9 -6.9 hypothetical protein compare
BPHYT_RS16455 -0.9 -5.8 ferritin compare
BPHYT_RS23815 -0.9 -3.0 LysR family transcriptional regulator compare
BPHYT_RS05320 -0.9 -1.6 beta-lactamase compare
BPHYT_RS29920 -0.9 -1.0 hypothetical protein compare
BPHYT_RS25095 -0.9 -2.2 AraC family transcriptional regulator compare
BPHYT_RS23630 -0.9 -2.2 hypothetical protein compare
BPHYT_RS26540 -0.9 -1.3 hypothetical protein compare
BPHYT_RS09290 -0.9 -5.0 helicase compare
BPHYT_RS14670 -0.9 -1.2 hypothetical protein compare
BPHYT_RS30795 -0.9 -0.9 short-chain dehydrogenase compare
BPHYT_RS09385 -0.8 -0.9 FAD-dependent oxidoreductase compare
BPHYT_RS01455 -0.8 -0.8 peptide deformylase compare


Specific Phenotypes

For 9 genes in this experiment