Experiment set2IT056 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

Beta-Lactose carbon source

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS10740 +1.5 12.8 DNA-binding response regulator compare
CA265_RS15895 +1.5 5.0 hypothetical protein compare
CA265_RS20350 +1.3 6.4 gliding motility lipoprotein GldH compare
CA265_RS15615 +1.3 6.8 malate dehydrogenase compare
CA265_RS10745 +1.3 10.9 diguanylate cyclase compare
CA265_RS15070 +1.2 5.8 hypothetical protein compare
CA265_RS04820 +1.2 7.6 GntR family transcriptional regulator compare
CA265_RS23510 +1.2 7.0 energy transducer TonB compare
CA265_RS04990 +1.1 5.6 short chain dehydrogenase compare
CA265_RS23305 +1.1 2.1 hypothetical protein compare
CA265_RS23515 +1.1 3.3 hypothetical protein compare
CA265_RS17455 +1.1 6.6 hypothetical protein compare
CA265_RS22690 +1.1 8.0 hypothetical protein compare
CA265_RS23145 +1.0 4.7 hypothetical protein compare
CA265_RS21365 +1.0 2.6 thiol reductase thioredoxin compare
CA265_RS06070 +1.0 5.3 hypothetical protein compare
CA265_RS23520 +1.0 6.9 phosphate ABC transporter substrate-binding protein compare
CA265_RS16325 +1.0 1.9 CsbD family protein compare
CA265_RS00380 +1.0 4.4 hypothetical protein compare
CA265_RS19940 +1.0 8.4 hypothetical protein compare
CA265_RS06065 +1.0 5.2 family 88 glycosyl hydrolase compare
CA265_RS12665 +1.0 2.2 cold-shock protein compare
CA265_RS15335 +1.0 4.8 NAD-dependent epimerase compare
CA265_RS18780 +1.0 3.2 YicC family protein compare
CA265_RS24750 +0.9 2.4 hypothetical protein compare
CA265_RS25030 +0.9 2.6 hypothetical protein compare
CA265_RS02045 +0.9 1.4 hypothetical protein compare
CA265_RS17720 +0.9 7.5 hypothetical protein compare
CA265_RS21565 +0.9 1.3 cold-shock protein compare
CA265_RS19945 +0.9 4.5 hypothetical protein compare
CA265_RS19030 +0.9 5.1 hypothetical protein compare
CA265_RS06055 +0.9 4.4 neuraminidase compare
CA265_RS18745 +0.9 1.5 hypothetical protein compare
CA265_RS18125 +0.8 5.3 gliding motility protein GldL compare
CA265_RS17685 +0.8 5.7 hypothetical protein compare
CA265_RS18120 +0.8 6.7 gliding motility protein GldM compare
CA265_RS15900 +0.8 2.1 hypothetical protein compare
CA265_RS02965 +0.8 4.6 hypothetical protein compare
CA265_RS21715 +0.8 4.9 hypothetical protein compare
CA265_RS03295 +0.8 6.4 gliding motility-associated ABC transporter substrate-binding protein GldG compare
CA265_RS18090 +0.8 7.0 gliding motility protein compare
CA265_RS06585 +0.8 4.9 hypothetical protein compare
CA265_RS18770 +0.8 4.3 hypothetical protein compare
CA265_RS23155 +0.8 3.8 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
CA265_RS22805 +0.8 5.4 glycosyl transferase compare
CA265_RS23635 +0.8 6.1 gliding motility lipoprotein GldJ compare
CA265_RS09720 +0.8 5.3 transglycosylase compare
CA265_RS12940 +0.8 4.1 peptidase dimerization domain protein compare
CA265_RS22620 +0.8 1.5 hypothetical protein compare
CA265_RS21000 +0.8 3.5 ribosome silencing factor compare
CA265_RS11940 +0.7 3.1 hypothetical protein compare
CA265_RS04330 +0.7 2.9 transcriptional regulator compare
CA265_RS24720 +0.7 6.4 multidrug transporter compare
CA265_RS14550 +0.7 4.7 hypothetical protein compare
CA265_RS15115 +0.7 4.4 porin compare
CA265_RS22820 +0.7 4.4 flagellar motor protein MotB compare
CA265_RS15085 +0.7 4.9 hypothetical protein compare
CA265_RS00690 +0.7 2.0 hypothetical protein compare
CA265_RS23675 +0.7 1.7 hypothetical protein compare
CA265_RS20525 +0.7 1.5 hypothetical protein compare
CA265_RS17680 +0.7 3.5 hypothetical protein compare
CA265_RS01975 +0.7 2.0 cell division protein compare
CA265_RS13695 +0.7 3.1 hypothetical protein compare
CA265_RS19380 +0.7 4.1 beta-carotene 15,15'-monooxygenase compare
CA265_RS01960 +0.7 0.9 division/cell wall cluster transcriptional repressor MraZ compare
CA265_RS18130 +0.7 5.4 gliding motility-associated lipoprotein compare
CA265_RS06075 +0.7 4.2 beta-glucanase compare
CA265_RS19540 +0.7 5.4 tail-specific protease compare
CA265_RS23505 +0.7 2.3 biopolymer transporter ExbD compare
CA265_RS10475 +0.7 3.7 amidinotransferase compare
CA265_RS18115 +0.7 3.9 gliding motility protein GldN compare
CA265_RS21900 +0.7 5.0 two-component sensor histidine kinase compare
CA265_RS03260 +0.6 4.5 multidrug ABC transporter ATP-binding protein compare
CA265_RS09050 +0.6 4.1 N-acetylmuramoyl-L-alanine amidase compare
CA265_RS14670 +0.6 4.0 hypothetical protein compare
CA265_RS22450 +0.6 2.1 GntR family transcriptional regulator compare
CA265_RS24940 +0.6 3.1 hypothetical protein compare
CA265_RS06595 +0.6 1.1 Arc family DNA binding domain-containing protein compare
CA265_RS03255 +0.6 4.6 glycerophosphodiester phosphodiesterase compare
CA265_RS17290 +0.6 1.0 tRNA-Lys compare
CA265_RS16005 +0.6 2.7 hypothetical protein compare
CA265_RS20865 +0.6 1.9 hypothetical protein compare
CA265_RS19360 +0.6 2.5 peptidylprolyl isomerase compare
CA265_RS06400 +0.6 4.0 DNA-binding response regulator compare
CA265_RS20315 +0.6 4.7 hypothetical protein compare
CA265_RS19655 +0.6 1.8 carboxymuconolactone decarboxylase family protein compare
CA265_RS19640 +0.6 2.1 hypothetical protein compare
CA265_RS00235 +0.6 1.4 hypothetical protein compare
CA265_RS18415 +0.6 2.8 hypothetical protein compare
CA265_RS14665 +0.6 4.3 hypothetical protein compare
CA265_RS17420 +0.6 2.7 glyoxalase compare
CA265_RS08880 +0.6 3.8 chromate transporter compare
CA265_RS04985 +0.6 2.4 hypothetical protein compare
CA265_RS18990 +0.6 5.1 cell surface protein SprA compare
CA265_RS00040 +0.6 2.1 hypothetical protein compare
CA265_RS20320 +0.5 5.0 hypothetical protein compare
CA265_RS24790 +0.5 3.9 peptidylprolyl isomerase compare
CA265_RS21905 +0.5 2.9 hypothetical protein compare
CA265_RS25260 +0.5 2.2 hypothetical protein compare
CA265_RS04020 +0.5 3.3 hypothetical protein compare
CA265_RS10600 +0.5 2.8 RNA polymerase subunit sigma-24 compare
CA265_RS08100 +0.5 2.5 cyclic nucleotide-binding protein compare
CA265_RS08905 +0.5 2.3 DNA helicase RecQ compare
CA265_RS22790 +0.5 3.3 hypothetical protein compare
CA265_RS24625 +0.5 3.6 LacI family transcriptional regulator compare
CA265_RS17585 +0.5 3.3 acetyl-CoA acetyltransferase compare
CA265_RS17575 +0.5 3.5 acyl-CoA dehydrogenase compare
CA265_RS17460 +0.5 2.2 RNA polymerase sigma-70 factor compare
CA265_RS10470 +0.5 3.9 amidinotransferase compare
CA265_RS17145 +0.5 2.0 malate:quinone oxidoreductase compare
CA265_RS21435 +0.5 2.8 hypothetical protein compare
CA265_RS04640 +0.5 3.3 efflux transporter periplasmic adaptor subunit compare
CA265_RS14825 +0.5 1.1 outer membrane protein assembly factor BamD compare
CA265_RS20375 +0.5 2.8 methyltransferase compare
CA265_RS22260 +0.5 2.6 hypothetical protein compare
CA265_RS03290 +0.5 3.7 gliding motility-associated ABC transporter permease subunit GldF compare
CA265_RS16140 +0.5 0.7 hypothetical protein compare
CA265_RS10390 +0.5 1.5 hypothetical protein compare
CA265_RS13265 +0.5 2.7 DNA-binding protein compare
CA265_RS04010 +0.5 3.3 hypothetical protein compare
CA265_RS08345 +0.5 2.0 L-fucose mutarotase compare
CA265_RS13225 +0.5 3.1 exonuclease compare
CA265_RS24700 +0.5 2.7 hypothetical protein compare
CA265_RS06930 +0.5 2.7 hypothetical protein compare
CA265_RS14840 +0.5 3.2 DUF4835 domain-containing protein compare
CA265_RS18260 +0.5 0.9 hypothetical protein compare
CA265_RS13050 +0.5 2.5 hypothetical protein compare
CA265_RS24855 +0.5 2.6 peptidase C26 compare
CA265_RS08970 +0.5 2.4 hypothetical protein compare
CA265_RS20355 +0.5 1.4 hypothetical protein compare
CA265_RS16295 +0.5 3.0 LacI family transcriptional regulator compare
CA265_RS19955 +0.5 1.2 hypothetical protein compare
CA265_RS06315 +0.5 2.8 uridine kinase compare
CA265_RS01955 +0.5 1.3 VapC toxin family PIN domain ribonuclease compare
CA265_RS23985 +0.5 2.8 gliding motility lipoprotein GldB compare
CA265_RS24605 +0.5 0.9 hypothetical protein compare
CA265_RS14740 +0.5 2.7 biopolymer transporter ExbB compare
CA265_RS02425 +0.5 2.2 GTP cyclohydrolase compare
CA265_RS04645 +0.5 2.9 cation transporter compare
CA265_RS04780 +0.5 1.3 polyketide cyclase compare
CA265_RS15330 +0.5 1.2 YebC/PmpR family DNA-binding transcriptional regulator compare
CA265_RS02500 +0.5 1.6 hypothetical protein compare
CA265_RS06265 +0.5 1.2 cold-shock protein compare
CA265_RS14745 +0.5 2.6 biopolymer transporter ExbD compare
CA265_RS03000 +0.5 1.9 RNA-binding protein compare
CA265_RS01100 +0.5 3.0 transcriptional regulator compare
CA265_RS15310 +0.5 2.8 beta-glucosidase compare
CA265_RS17710 +0.5 3.4 hypothetical protein compare
CA265_RS10905 +0.5 2.1 iron-dependent repressor compare
CA265_RS19455 +0.5 3.1 hypothetical protein compare
CA265_RS23455 +0.5 1.8 hypothetical protein compare
CA265_RS23800 +0.5 2.4 methyltransferase type 12 compare
CA265_RS09415 +0.5 1.3 hypothetical protein compare
CA265_RS20800 +0.4 1.0 hypothetical protein compare
CA265_RS12890 +0.4 3.4 hypothetical protein compare
CA265_RS19390 +0.4 2.7 UDP-2,3-diacylglucosamine hydrolase compare
CA265_RS17440 +0.4 3.4 Fis family transcriptional regulator compare
CA265_RS17885 +0.4 2.0 CopY family transcriptional repressor compare
CA265_RS06600 +0.4 3.2 hypothetical protein compare
CA265_RS18035 +0.4 1.9 hypothetical protein compare
CA265_RS16470 +0.4 2.4 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
CA265_RS08085 +0.4 2.7 aminodeoxychorismate lyase compare
CA265_RS21760 +0.4 2.0 hypothetical protein compare
CA265_RS01715 +0.4 2.8 hypothetical protein compare
CA265_RS20980 +0.4 1.7 6-phosphofructokinase compare
CA265_RS14620 +0.4 2.1 hypothetical protein compare
CA265_RS06060 +0.4 2.7 beta-xylosidase compare
CA265_RS15315 +0.4 2.1 xylosidase compare
CA265_RS07735 +0.4 0.8 transcriptional regulator compare
CA265_RS17115 +0.4 1.8 arsenate reductase compare
CA265_RS14935 +0.4 3.6 hypothetical protein compare
CA265_RS10770 +0.4 2.2 AsnC family transcriptional regulator compare
CA265_RS19350 +0.4 2.9 ATP-dependent exodnase (exonuclease V) alpha subunit - helicase superfamily I member compare
CA265_RS24980 +0.4 1.5 hypothetical protein compare
CA265_RS02495 +0.4 2.9 RagB/SusD family nutrient uptake outer membrane protein compare
CA265_RS24675 +0.4 2.3 RNA polymerase compare
CA265_RS16010 +0.4 1.6 short-chain dehydrogenase compare
CA265_RS04635 +0.4 3.6 CusA/CzcA family heavy metal efflux RND transporter compare
CA265_RS18790 +0.4 1.9 four helix bundle protein compare
CA265_RS23250 +0.4 2.1 hypothetical protein compare
CA265_RS09045 +0.4 3.1 ABC transporter permease compare
CA265_RS08060 +0.4 1.6 hypothetical protein compare
CA265_RS22800 +0.4 2.9 glycosyl transferase compare
CA265_RS18570 +0.4 1.8 hypothetical protein compare
CA265_RS14010 +0.4 2.4 histidine kinase compare
CA265_RS14770 +0.4 1.7 hypothetical protein compare
CA265_RS15870 +0.4 1.1 hypothetical protein compare
CA265_RS04140 +0.4 2.7 glycogen synthase compare
CA265_RS11125 +0.4 1.6 hypothetical protein compare
CA265_RS16000 +0.4 2.2 hypothetical protein compare
CA265_RS10985 +0.4 2.3 hypothetical protein compare
CA265_RS20205 +0.4 2.3 very short patch repair endonuclease compare
CA265_RS01035 +0.4 2.0 hypothetical protein compare
CA265_RS08225 +0.4 1.9 hydrolase compare
CA265_RS15010 +0.4 1.9 hypothetical protein compare
CA265_RS05135 +0.4 1.9 ferritin compare
CA265_RS25410 +0.4 2.0 gluconate kinase compare
CA265_RS14960 +0.4 0.9 hypothetical protein compare
CA265_RS24995 +0.4 2.3 hypothetical protein compare
CA265_RS18280 +0.4 2.7 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Beta-Lactose in Pedobacter sp. GW460-11-11-14-LB5

For carbon source Beta-Lactose across organisms