Experiment set2IT056 for Herbaspirillum seropedicae SmR1

Compare to:

L-Asparagine carbon source

200 most important genes:

  gene name fitness t score description  
HSERO_RS18990 -7.6 -7.4 pyrroline-5-carboxylate reductase compare
HSERO_RS20350 -7.3 -6.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
HSERO_RS20310 -7.2 -4.6 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (from data) compare
HSERO_RS17110 -7.0 -4.7 ribonuclease H compare
HSERO_RS00795 -6.7 -4.6 glycerol-3-phosphate dehydrogenase compare
HSERO_RS17815 -6.6 -4.3 glycosyl transferase compare
HSERO_RS20330 -6.4 -6.7 imidazoleglycerol-phosphate dehydratase compare
HSERO_RS16480 -6.3 -4.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
HSERO_RS02330 -6.2 -6.2 aspartate carbamoyltransferase compare
HSERO_RS15550 -6.1 -5.8 sulfite reductase compare
HSERO_RS20345 -6.0 -4.7 histidinol dehydrogenase compare
HSERO_RS08650 -5.8 -10.2 acetolactate synthase compare
HSERO_RS16505 -5.8 -6.1 3-isopropylmalate dehydratase small subunit compare
HSERO_RS07160 -5.8 -7.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
HSERO_RS15575 -5.8 -1.9 uroporphyrin-III C-methyltransferase compare
HSERO_RS18430 -5.7 -6.7 chorismate mutase compare
HSERO_RS16500 -5.7 -7.0 3-isopropylmalate dehydrogenase compare
HSERO_RS15555 -5.6 -5.1 oxidoreductase compare
HSERO_RS16515 -5.6 -10.8 isopropylmalate isomerase compare
HSERO_RS15570 -5.6 -6.1 sulfate adenylyltransferase compare
HSERO_RS19445 -5.5 -12.0 anthranilate phosphoribosyltransferase compare
HSERO_RS20315 -5.5 -5.0 imidazole glycerol phosphate synthase compare
HSERO_RS01935 -5.5 -5.9 3-dehydroquinate dehydratase compare
HSERO_RS20320 -5.4 -6.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
HSERO_RS17810 -5.4 -2.5 glycosyl transferase compare
HSERO_RS08405 -5.3 -2.3 membrane protein compare
HSERO_RS01815 -5.3 -9.3 gamma-glutamyl kinase compare
HSERO_RS04325 -5.1 -9.0 helicase I compare
HSERO_RS00455 -5.1 -10.1 homoserine O-acetyltransferase compare
HSERO_RS19630 -5.1 -1.6 AMP nucleosidase compare
HSERO_RS15560 -5.0 -5.4 phosphoadenosine phosphosulfate reductase compare
HSERO_RS15630 -5.0 -1.6 exodeoxyribonuclease III compare
HSERO_RS08655 -5.0 -3.5 acetolactate synthase compare
HSERO_RS20920 -4.9 -7.3 3-dehydroquinate synthase compare
HSERO_RS19435 -4.9 -8.3 anthranilate synthase subunit I compare
HSERO_RS17980 -4.7 -3.4 GTP-binding protein compare
HSERO_RS19510 -4.5 -10.2 threonine dehydratase compare
HSERO_RS02650 -4.4 -7.4 dihydroxy-acid dehydratase compare
HSERO_RS16475 -4.4 -2.8 tryptophan synthase subunit alpha compare
HSERO_RS17185 -4.4 -6.4 2-isopropylmalate synthase compare
HSERO_RS15585 -4.2 -12.1 cobalamin biosynthesis protein CbiX compare
HSERO_RS10805 -4.1 -2.4 succinyldiaminopimelate aminotransferase compare
HSERO_RS19450 -4.1 -2.7 indole-3-glycerol-phosphate synthase compare
HSERO_RS09050 -3.9 -4.2 2-aminoadipate aminotransferase compare
HSERO_RS08660 -3.9 -6.6 ketol-acid reductoisomerase compare
HSERO_RS15565 -3.9 -5.0 sulfate adenylyltransferase subunit 2 compare
HSERO_RS20325 -3.8 -4.3 IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) compare
HSERO_RS00800 -3.8 -4.8 hypothetical protein compare
HSERO_RS07970 -3.8 -1.9 formyltetrahydrofolate deformylase compare
HSERO_RS02260 -3.8 -3.1 DNA polymerase I compare
HSERO_RS02145 -3.7 -2.0 ferritin compare
HSERO_RS10460 -3.7 -2.3 homoserine dehydrogenase compare
HSERO_RS16440 -3.6 -3.2 O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) (from data) compare
HSERO_RS15835 -3.2 -2.3 aspartate aminotransferase compare
HSERO_RS17105 -3.2 -2.9 DNA polymerase III subunit epsilon compare
HSERO_RS10455 -3.2 -6.0 aminotransferase compare
HSERO_RS04330 -3.2 -6.5 ATP-dependent exonuclease compare
HSERO_RS16470 -3.1 -2.3 tryptophan synthase subunit alpha compare
HSERO_RS20820 -3.1 -1.4 ABC transporter ATP-binding protein compare
HSERO_RS05515 -2.9 -1.6 glucose-6-phosphate isomerase compare
HSERO_RS13285 -2.9 -2.9 precorrin-2 C20-methyltransferase compare
HSERO_RS19815 -2.9 -12.8 phytanoyl-CoA dioxygenase compare
HSERO_RS10815 -2.9 -4.2 chromosome segregation protein SMC compare
HSERO_RS13965 -2.9 -3.6 single-stranded DNA exonuclease compare
HSERO_RS16885 -2.9 -2.4 magnesium-transporting ATPase compare
HSERO_RS19995 -2.6 -1.6 3-oxoadipate CoA-transferase subunit B compare
HSERO_RS20355 -2.5 -2.8 UDP-N-acetylglucosamine 1-carboxyvinyltransferase compare
HSERO_RS04265 -2.5 -2.1 tyrosine recombinase XerD compare
HSERO_RS06245 -2.5 -9.3 catalase-peroxidase compare
HSERO_RS13960 -2.5 -4.1 hypothetical protein compare
HSERO_RS11070 -2.4 -6.1 nicotinate-nucleotide pyrophosphorylase compare
HSERO_RS03540 -2.4 -1.8 dimethyladenosine transferase compare
HSERO_RS02090 -2.4 -2.0 Holliday junction DNA helicase RuvA compare
HSERO_RS19265 -2.3 -2.8 LysR family transcriptional regulator compare
HSERO_RS02325 -2.3 -5.5 uracil phosphoribosyltransferase compare
HSERO_RS06165 -2.3 -6.9 ATP-dependent DNA helicase RecG compare
HSERO_RS19135 -2.3 -2.2 exodeoxyribonuclease compare
HSERO_RS21475 -2.3 -2.9 recombinase XerC compare
HSERO_RS03270 -2.3 -3.0 protein RecA compare
HSERO_RS22025 -2.2 -4.1 aromatic amino acid aminotransferase compare
HSERO_RS13280 -2.2 -3.2 precorrin-4 C11-methyltransferase compare
HSERO_RS20625 -2.1 -1.8 phenylacetate-CoA oxygenase compare
HSERO_RS01260 -2.1 -2.9 3-hydroxyacyl-CoA dehydrogenase compare
HSERO_RS13260 -2.1 -2.6 cobinamide adenolsyltransferase compare
HSERO_RS02215 -2.1 -1.4 D-arabinitol 4-dehydrogenase compare
HSERO_RS13230 -2.0 -1.8 cobyric acid synthase compare
HSERO_RS10850 -2.0 -3.4 ABC transporter compare
HSERO_RS13295 -1.9 -3.5 membrane protein compare
HSERO_RS14835 -1.9 -4.6 peptidase M23 compare
HSERO_RS21740 -1.9 -7.8 methionine synthase compare
HSERO_RS21340 -1.9 -6.7 septum formation inhibitor protein compare
HSERO_RS09770 -1.9 -4.6 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
HSERO_RS00815 -1.8 -2.6 sulfurtransferase compare
HSERO_RS09155 -1.8 -9.0 DNA topoisomerase IV subunit B compare
HSERO_RS12220 -1.7 -1.5 dehydrogenase compare
HSERO_RS13255 -1.7 -4.2 cobyrinic acid a,c-diamide synthase compare
HSERO_RS20985 -1.7 -2.1 serine acetyltransferase compare
HSERO_RS13265 -1.7 -3.2 G3E family GTPase compare
HSERO_RS23945 -1.7 -3.1 cobyric acid synthase CobQ compare
HSERO_RS13270 -1.6 -6.8 bifunctional precorrin-3 methyltransferase/precorrin-6x reductase oxidoreductase compare
HSERO_RS20405 -1.6 -5.1 GTP-binding protein YchF compare
HSERO_RS16420 -1.6 -6.0 phosphoesterase compare
HSERO_RS01990 -1.6 -5.9 shikimate 5-dehydrogenase compare
HSERO_RS13275 -1.5 -1.8 cobalamin biosynthesis protein CbiG compare
HSERO_RS13055 -1.5 -2.1 energy transducer TonB compare
HSERO_RS21345 -1.5 -4.8 cell division inhibitor MinD compare
HSERO_RS19245 -1.5 -4.1 glutamate/aspartate transporter permease GltK compare
HSERO_RS05910 -1.5 -2.1 phosphoribosylglycinamide formyltransferase compare
HSERO_RS19835 -1.5 -2.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
HSERO_RS11065 -1.5 -2.9 quinolinate synthetase compare
HSERO_RS19240 -1.5 -7.5 arginine ABC transporter ATP-binding protein compare
HSERO_RS10410 -1.5 -2.6 alkyl hydroperoxide reductase compare
HSERO_RS11460 -1.4 -1.7 universal stress protein compare
HSERO_RS09775 -1.4 -2.0 cobalamin synthase compare
HSERO_RS07755 -1.4 -4.0 glutamate racemase compare
HSERO_RS20370 -1.4 -3.2 ABC transporter ATP-binding protein compare
HSERO_RS13315 -1.4 -1.2 ferredoxin compare
HSERO_RS13310 -1.4 -5.9 cobaltochelatase compare
HSERO_RS01265 -1.4 -3.9 acetyl-CoA acetyltransferase compare
HSERO_RS18010 -1.3 -2.6 pseudouridine synthase compare
HSERO_RS20825 -1.3 -2.2 ABC transporter permease compare
HSERO_RS08515 -1.3 -2.5 diguanylate cyclase compare
HSERO_RS13290 -1.3 -3.7 cobalt-precorrin-6A synthase compare
HSERO_RS19255 -1.3 -6.8 ABC transporter compare
HSERO_RS15070 -1.3 -1.7 ribosomal large subunit pseudouridine synthase D compare
HSERO_RS09915 -1.3 -3.1 transcriptional regulator compare
HSERO_RS19550 -1.3 -2.9 hypothetical protein compare
HSERO_RS00745 -1.3 -3.5 alkylhydroperoxidase compare
HSERO_RS13320 -1.3 -2.6 membrane protein compare
HSERO_RS02255 -1.2 -3.7 decarboxylase compare
HSERO_RS02160 -1.2 -0.6 DNA-dependent helicase compare
HSERO_RS19535 -1.2 -2.3 nucleotide-binding protein compare
HSERO_RS13305 -1.2 -4.6 magnesium chelatase compare
HSERO_RS18070 -1.2 -1.5 hypothetical protein compare
HSERO_RS22040 -1.2 -3.1 CDP-glucose 4,6-dehydratase compare
HSERO_RS09660 -1.2 -1.9 ribonuclease III compare
HSERO_RS15665 -1.2 -1.3 propionate catabolism operon regulatory protein PrpR compare
HSERO_RS08430 -1.1 -3.8 diguanylate cyclase compare
HSERO_RS11475 -1.1 -1.5 hypothetical protein compare
HSERO_RS21100 -1.1 -7.2 UDP-N-acetylglucosamine 2-epimerase compare
HSERO_RS18425 -1.1 -1.1 prephenate dehydrogenase compare
HSERO_RS10340 -1.1 -2.6 flagellar biosynthesis protein FliS compare
HSERO_RS12015 -1.1 -1.0 molecular chaperone DnaK compare
HSERO_RS18360 -1.1 -2.4 hypothetical protein compare
HSERO_RS09335 -1.0 -1.0 DNA-3-methyladenine glycosylase compare
HSERO_RS06015 -1.0 -1.3 hisitidine kinase compare
HSERO_RS09455 -1.0 -3.0 NAD synthetase compare
HSERO_RS11010 -1.0 -1.6 RnfH compare
HSERO_RS18995 -1.0 -2.3 hypothetical protein compare
HSERO_RS20365 -1.0 -1.5 metal-dependent hydrolase compare
HSERO_RS21005 -1.0 -5.6 asparagine synthase compare
HSERO_RS00450 -1.0 -2.2 phosphoenolpyruvate-protein phosphotransferase compare
HSERO_RS00430 -1.0 -2.7 glutamate--cysteine ligase compare
HSERO_RS04270 -1.0 -1.5 membrane protein compare
HSERO_RS14030 -1.0 -2.5 hypothetical protein compare
HSERO_RS07600 -1.0 -3.1 threonine-phosphate decarboxylase compare
HSERO_RS13240 -1.0 -2.1 cobalamin biosynthesis protein CobD compare
HSERO_RS09220 -1.0 -2.3 hypothetical protein compare
HSERO_RS16685 -1.0 -2.6 lactate dehydrogenase compare
HSERO_RS02245 -1.0 -1.9 hypothetical protein compare
HSERO_RS09375 -1.0 -2.1 hypothetical protein compare
HSERO_RS11325 -1.0 -2.4 membrane protein compare
HSERO_RS18455 -1.0 -2.6 phosphoglycolate phosphatase compare
HSERO_RS18685 -1.0 -0.9 hypothetical protein compare
HSERO_RS02235 -1.0 -2.0 membrane protein compare
HSERO_RS21000 -1.0 -3.3 aminotransferase DegT compare
HSERO_RS14930 -0.9 -1.5 aldolase compare
HSERO_RS07730 -0.9 -2.4 ferredoxin-NADP reductase compare
HSERO_RS20250 -0.9 -1.0 large conductance mechanosensitive channel protein MscL compare
HSERO_RS13880 -0.9 -0.9 hypothetical protein compare
HSERO_RS10395 -0.9 -1.1 phosphate transport regulator compare
HSERO_RS03295 -0.9 -1.3 type IV pilin compare
HSERO_RS15545 -0.9 -3.6 membrane protein compare
HSERO_RS12470 -0.9 -1.6 chemotaxis protein CheY compare
HSERO_RS21990 -0.9 -1.2 hypothetical protein compare
HSERO_RS03445 -0.9 -2.9 biopolymer transport transmembrane protein compare
HSERO_RS19250 -0.9 -2.7 glutamate ABC transporter permease compare
HSERO_RS11590 -0.9 -1.8 hypothetical protein compare
HSERO_RS03450 -0.9 -1.7 energy transducer protein TonB compare
HSERO_RS05500 -0.9 -1.7 transaldolase compare
HSERO_RS01255 -0.9 -3.4 acyl-CoA dehydrogenase compare
HSERO_RS23515 -0.9 -1.5 lipoprotein compare
HSERO_RS17720 -0.9 -2.7 aminopeptidase N compare
HSERO_RS15435 -0.8 -1.4 enoyl-CoA hydratase compare
HSERO_RS18525 -0.8 -2.5 hypothetical protein compare
HSERO_RS14840 -0.8 -2.4 protein-L-isoaspartate O-methyltransferase compare
HSERO_RS01095 -0.8 -2.6 hypothetical protein compare
HSERO_RS16050 -0.8 -2.4 peptidase S41 compare
HSERO_RS07035 -0.8 -3.4 peptidase M48 compare
HSERO_RS04190 -0.8 -3.1 DNA mismatch repair protein compare
HSERO_RS01105 -0.8 -1.4 hypothetical protein compare
HSERO_RS15655 -0.8 -1.8 methylcitrate synthase compare
HSERO_RS12480 -0.8 -0.8 membrane protein compare
HSERO_RS23155 -0.8 -1.7 AraC family transcriptional regulator compare
HSERO_RS07110 -0.8 -3.8 16S rRNA methyltransferase compare
HSERO_RS01455 -0.8 -1.2 hypothetical protein compare
HSERO_RS03385 -0.8 -1.6 flavin reductase compare
HSERO_RS16835 -0.8 -2.7 phosphatidylglycerophosphatase compare
HSERO_RS08640 -0.8 -1.0 hypothetical protein compare
HSERO_RS08045 -0.8 -4.1 preprotein translocase subunit TatB compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source L-Asparagine in Herbaspirillum seropedicae SmR1

For carbon source L-Asparagine across organisms