Experiment set2IT056 for Cupriavidus basilensis FW507-4G11

Compare to:

Sodium butyrate carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS18305 -6.8 -4.7 anthranilate phosphoribosyltransferase compare
RR42_RS05860 -6.7 -4.6 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS16265 -6.6 -5.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS14390 -6.4 -4.4 3-isopropylmalate dehydratase compare
RR42_RS14400 -6.3 -4.4 isopropylmalate isomerase compare
RR42_RS12175 -6.2 -7.4 malate synthase compare
RR42_RS33255 -6.1 -3.9 protein-tyrosine phosphatase compare
RR42_RS06485 -6.1 -8.3 chorismate synthase compare
RR42_RS07425 -5.9 -8.0 IclR family transcriptional regulator compare
RR42_RS19005 -5.5 -6.5 3-dehydroquinate synthase compare
RR42_RS16255 -5.3 -8.8 sulfate adenylyltransferase compare
RR42_RS01385 -5.3 -4.5 5,10-methylenetetrahydrofolate reductase compare
RR42_RS30655 -5.3 -8.0 LysR family transcriptional regulator compare
RR42_RS16250 -5.2 -8.7 sulfate adenylyltransferase compare
RR42_RS12185 -5.0 -2.2 LysR family transcriptional regulator compare
RR42_RS14365 -5.0 -3.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS01160 -4.9 -9.6 homoserine O-acetyltransferase compare
RR42_RS14385 -4.8 -7.7 3-isopropylmalate dehydrogenase compare
RR42_RS18295 -4.7 -14.4 anthranilate synthase component I compare
RR42_RS04475 -4.6 -9.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS16280 -4.5 -8.6 transcriptional regulator compare
RR42_RS17645 -4.4 -8.4 shikimate dehydrogenase compare
RR42_RS07555 -4.3 -3.6 potassium transporter Kup compare
RR42_RS13910 -4.2 -6.4 glutamate racemase compare
RR42_RS14320 -4.2 -6.9 O-succinylhomoserine sulfhydrylase compare
RR42_RS16270 -3.9 -9.3 sulfite reductase compare
RR42_RS18300 -3.9 -5.1 anthranilate synthase subunit II compare
RR42_RS30660 -3.9 -8.1 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS01290 -3.8 -6.0 thiamine biosynthesis protein ThiC compare
RR42_RS33240 -3.6 -19.3 GDP-L-fucose synthase compare
RR42_RS33260 -3.6 -9.3 multidrug MFS transporter compare
RR42_RS01795 -3.4 -12.6 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS01845 -3.4 -2.0 glycerol-3-phosphate dehydrogenase compare
RR42_RS18990 -3.2 -17.4 glutamate synthase compare
RR42_RS16245 -3.2 -4.3 uroporphyrin-III methyltransferase compare
RR42_RS14360 -3.1 -1.7 tryptophan synthase subunit alpha compare
RR42_RS01780 -3.1 -9.1 glutathione synthetase compare
RR42_RS19010 -3.1 -6.7 shikimate kinase compare
RR42_RS29255 -3.0 -8.6 GTP cyclohydrolase compare
RR42_RS33245 -2.9 -8.2 mannose-1-phosphate guanyltransferase compare
RR42_RS04470 -2.9 -8.0 prephenate dehydrogenase compare
RR42_RS00875 -2.9 -16.0 isocitrate dehydrogenase compare
RR42_RS04460 -2.9 -5.9 chorismate mutase compare
RR42_RS33250 -2.8 -6.7 tyrosine protein kinase compare
RR42_RS05955 -2.8 -2.0 hypothetical protein compare
RR42_RS35875 -2.8 -11.5 UDP-galactose-4-epimerase compare
RR42_RS11795 -2.8 -2.4 PEP synthetase regulatory protein compare
RR42_RS05990 -2.7 -9.6 aromatic amino acid aminotransferase compare
RR42_RS04580 -2.7 -10.3 Butyryl-CoA dehydrogenase (EC 1.3.8.1) (from data) conserved
RR42_RS07605 -2.7 -7.4 poly-beta-hydroxybutyrate polymerase compare
RR42_RS01775 -2.6 -5.7 glutamate--cysteine ligase compare
RR42_RS02705 -2.5 -3.1 Holliday junction DNA helicase RuvA compare
RR42_RS12925 -2.5 -2.6 ATPase compare
RR42_RS33215 -2.5 -13.2 transferase compare
RR42_RS17720 -2.5 -3.9 sugar kinase compare
RR42_RS03095 -2.4 -3.1 succinyl-CoA synthetase subunit beta compare
RR42_RS18985 -2.4 -5.8 glutamate synthase compare
RR42_RS21220 -2.4 -2.1 iron transporter FeoB compare
RR42_RS33355 -2.3 -6.9 membrane protein compare
RR42_RS16275 -2.3 -3.8 membrane protein compare
RR42_RS16260 -2.3 -1.3 phosphoadenosine phosphosulfate reductase compare
RR42_RS33210 -2.3 -5.9 teichoic acid biosynthesis protein compare
RR42_RS23515 -2.3 -5.6 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
RR42_RS33235 -2.2 -8.3 GDP-mannose 4,6-dehydratase compare
RR42_RS18020 -2.2 -4.4 ornithine acetyltransferase compare
RR42_RS04535 -2.1 -4.0 cysteine synthase compare
RR42_RS15890 -2.1 -7.3 heme biosynthesis protein HemY compare
RR42_RS19085 -2.0 -2.5 cytochrome C biogenesis protein ResB compare
RR42_RS27905 -2.0 -5.7 AraC family transcriptional regulator compare
RR42_RS04895 -1.9 -8.5 serine/threonine protein phosphatase compare
RR42_RS02045 -1.9 -11.3 GTPase compare
RR42_RS18310 -1.9 -1.5 indole-3-glycerol-phosphate synthase compare
RR42_RS16240 -1.8 -1.8 cobalamin biosynthesis protein CbiX compare
RR42_RS17060 -1.8 -12.8 histidine kinase compare
RR42_RS26900 -1.8 -3.2 enoyl-CoA hydratase compare
RR42_RS30640 -1.7 -5.9 DNA mismatch repair protein MutT compare
RR42_RS33195 -1.7 -9.9 UDP-sugar lipid carrier transferase compare
RR42_RS17565 -1.7 -11.8 LysR family transcriptional regulator compare
RR42_RS08945 -1.6 -1.9 hypothetical protein compare
RR42_RS17020 -1.6 -7.0 quinolinate synthetase compare
RR42_RS17055 -1.5 -6.2 LuxR family transcriptional regulator compare
RR42_RS12545 -1.5 -9.1 aminotransferase compare
RR42_RS12180 -1.5 -2.6 haloacid dehalogenase compare
RR42_RS18855 -1.5 -4.0 preprotein translocase compare
RR42_RS13905 -1.4 -2.9 fumarate hydratase compare
RR42_RS01920 -1.4 -3.3 protoheme IX farnesyltransferase compare
RR42_RS19090 -1.4 -2.0 cytochrome C compare
RR42_RS12550 -1.4 -3.9 hypothetical protein compare
RR42_RS08425 -1.4 -2.1 hypothetical protein compare
RR42_RS00925 -1.4 -8.6 adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA compare
RR42_RS15895 -1.4 -5.7 uroporphyrinogen III methyltransferase compare
RR42_RS05485 -1.4 -2.9 polynucleotide phosphorylase/polyadenylase compare
RR42_RS21665 -1.4 -7.7 cobalt transporter compare
RR42_RS17105 -1.3 -8.0 Clp protease ClpX compare
RR42_RS00940 -1.3 -7.7 biotin synthase compare
RR42_RS20205 -1.3 -2.9 chromosome partitioning protein compare
RR42_RS12040 -1.3 -6.6 MFS transporter compare
RR42_RS31530 -1.3 -3.2 histidine kinase compare
RR42_RS03920 -1.3 -2.8 rubredoxin compare
RR42_RS32595 -1.3 -5.4 cytochrome o ubiquinol oxidase subunit I compare
RR42_RS01380 -1.3 -1.4 membrane protein compare
RR42_RS00420 -1.3 -3.5 hypothetical protein compare
RR42_RS01505 -1.3 -1.9 tRNA-Cys compare
RR42_RS04255 -1.3 -2.0 chemotaxis protein CheW compare
RR42_RS31495 -1.2 -1.9 Cro/Cl family transcriptional regulator compare
RR42_RS37240 -1.2 -1.2 hypothetical protein compare
RR42_RS18140 -1.2 -1.6 MarR family transcriptional regulator compare
RR42_RS14055 -1.2 -2.5 elongation factor 4 compare
RR42_RS33815 -1.2 -1.1 isochorismatase compare
RR42_RS20570 -1.1 -1.8 biopolymer transporter ExbD compare
RR42_RS17730 -1.1 -2.2 hypothetical protein compare
RR42_RS06545 -1.1 -1.6 thioesterase compare
RR42_RS05665 -1.1 -1.3 urease accessory protein UreJ compare
RR42_RS24790 -1.1 -1.4 LysR family transcriptional regulator compare
RR42_RS06095 -1.1 -3.0 hypothetical protein compare
RR42_RS32600 -1.1 -3.0 cytochrome O ubiquinol oxidase subunit II compare
RR42_RS22590 -1.1 -1.0 organic hydroperoxide resistance protein compare
RR42_RS13800 -1.1 -4.3 formyltetrahydrofolate deformylase compare
RR42_RS01720 -1.1 -1.8 membrane protein compare
RR42_RS04145 -1.0 -0.7 peptidase A24 compare
RR42_RS18970 -1.0 -6.8 toluene ABC transporter ATP-binding protein compare
RR42_RS17390 -1.0 -4.0 ATP-dependent DNA helicase RecG compare
RR42_RS32585 -1.0 -1.8 cytochrome C oxidase compare
RR42_RS06630 -1.0 -2.0 integration host factor subunit alpha compare
RR42_RS11790 -1.0 -6.4 phosphoenolpyruvate synthase compare
RR42_RS09630 -1.0 -1.9 hypothetical protein compare
RR42_RS00625 -1.0 -1.3 hypothetical protein compare
RR42_RS10365 -1.0 -2.4 ABC transporter compare
RR42_RS03080 -1.0 -2.2 recombinase RecA compare
RR42_RS02250 -1.0 -2.2 GntR family transcriptional regulator compare
RR42_RS15035 -1.0 -3.7 ZIP zinc transporter compare
RR42_RS13515 -1.0 -3.0 membrane protein compare
RR42_RS05420 -1.0 -3.6 membrane protein compare
RR42_RS18965 -1.0 -6.5 ABC transporter permease compare
RR42_RS18960 -1.0 -6.5 ABC transporter substrate-binding protein compare
RR42_RS27550 -1.0 -1.0 hypothetical protein compare
RR42_RS10465 -1.0 -1.5 hypothetical protein compare
RR42_RS02310 -0.9 -2.9 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
RR42_RS26220 -0.9 -1.7 citrate lyase subunit beta compare
RR42_RS28695 -0.9 -1.6 hypothetical protein compare
RR42_RS03670 -0.9 -1.8 isochorismatase compare
RR42_RS21435 -0.9 -2.3 hypothetical protein compare
RR42_RS18850 -0.9 -1.4 preprotein translocase subunit TatC compare
RR42_RS08000 -0.9 -1.1 hypothetical protein compare
RR42_RS21295 -0.9 -2.3 L-lactate dehydrogenase, LutA subunit (from data) compare
RR42_RS06325 -0.9 -1.4 serine O-acetyltransferase compare
RR42_RS17010 -0.9 -6.1 L-aspartate oxidase compare
RR42_RS25015 -0.9 -1.8 gluconolactonase compare
RR42_RS07140 -0.9 -1.2 hypothetical protein compare
RR42_RS26920 -0.9 -2.9 TetR family transcriptional regulator compare
RR42_RS18825 -0.9 -3.0 ubiquinol-cytochrome C reductase compare
RR42_RS06875 -0.9 -1.2 hypothetical protein compare
RR42_RS32785 -0.9 -2.9 chemotaxis protein compare
RR42_RS04320 -0.9 -3.7 cell division protein FtsK compare
RR42_RS05290 -0.8 -1.3 ankyrin compare
RR42_RS00930 -0.8 -4.5 8-amino-7-oxononanoate synthase compare
RR42_RS31285 -0.8 -1.5 XRE family transcriptional regulator compare
RR42_RS19410 -0.8 -3.1 GntR family transcriptional regulator compare
RR42_RS14585 -0.8 -3.5 L-PSP family endoribonuclease compare
RR42_RS24605 -0.8 -5.0 TetR family transcriptional regulator compare
RR42_RS30410 -0.8 -1.6 hypothetical protein compare
RR42_RS33205 -0.8 -4.2 UDP-glucose 6-dehydrogenase compare
RR42_RS28720 -0.8 -2.1 hypothetical protein compare
RR42_RS15785 -0.8 -4.0 glycosyl transferase family 28 compare
RR42_RS12250 -0.8 -2.1 sulfate ABC transporter ATP-binding protein compare
RR42_RS01610 -0.8 -2.0 3-hydroxybutyryl-CoA dehydrogenase compare
RR42_RS18940 -0.8 -2.8 ABC transporter ATP-binding protein compare
RR42_RS18840 -0.8 -2.1 2-alkenal reductase compare
RR42_RS22250 -0.8 -1.4 hypothetical protein compare
RR42_RS04955 -0.8 -1.6 hypothetical protein compare
RR42_RS23205 -0.8 -0.8 hypothetical protein compare
RR42_RS21000 -0.8 -2.1 glycosyl transferase compare
RR42_RS25765 -0.8 -2.7 hypothetical protein compare
RR42_RS33575 -0.8 -1.7 hypothetical protein compare
RR42_RS07240 -0.8 -1.8 hypothetical protein compare
RR42_RS14625 -0.7 -2.1 formimidoylglutamase compare
RR42_RS17620 -0.7 -3.1 phosphatidylglycerophosphatase compare
RR42_RS08630 -0.7 -1.1 head completion/stabilization protein compare
RR42_RS12015 -0.7 -1.8 dihydrolipoamide acyltransferase compare
RR42_RS21125 -0.7 -1.6 membrane protein compare
RR42_RS34205 -0.7 -1.9 hypothetical protein compare
RR42_RS18995 -0.7 -4.2 transposase compare
RR42_RS18365 -0.7 -2.1 GTP-binding protein compare
RR42_RS25785 -0.7 -1.4 TetR family transcriptional regulator compare
RR42_RS17400 -0.7 -3.1 queuine tRNA-ribosyltransferase compare
RR42_RS32740 -0.7 -0.8 enoyl-CoA hydratase compare
RR42_RS19635 -0.7 -1.0 hypothetical protein compare
RR42_RS11770 -0.7 -1.3 cyclase compare
RR42_RS04770 -0.7 -1.0 methylglyoxal synthase compare
RR42_RS10505 -0.7 -2.4 citrate synthase compare
RR42_RS07565 -0.7 -3.8 transcription accessory protein compare
RR42_RS04300 -0.7 -1.6 nitrogen regulatory protein P-II 1 compare
RR42_RS33850 -0.7 -1.7 hypothetical protein compare
RR42_RS34060 -0.7 -1.0 alpha/beta hydrolase compare
RR42_RS15740 -0.7 -1.2 hypothetical protein compare
RR42_RS34650 -0.7 -3.3 LacI family transcriptional regulator compare
RR42_RS01420 -0.7 -1.2 2', 3'-cyclic nucleotide 2'-phosphodiesterase compare
RR42_RS01450 -0.7 -1.6 hypothetical protein compare
RR42_RS19765 -0.7 -1.6 arsenate reductase compare
RR42_RS25845 -0.7 -4.8 isocitrate lyase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Sodium butyrate in Cupriavidus basilensis FW507-4G11

For carbon source Sodium butyrate across organisms