Experiment set2IT056 for Cupriavidus basilensis FW507-4G11

Compare to:

Sodium butyrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS23140 +1.9 2.3 peptidylprolyl isomerase compare
RR42_RS03020 +1.6 2.6 MarR family transcriptional regulator compare
RR42_RS35725 +1.4 2.6 flagellar biosynthesis protein FlgB compare
RR42_RS09555 +1.2 3.0 universal stress protein UspA compare
RR42_RS10855 +1.2 1.7 diguanylate phosphodiesterase compare
RR42_RS13685 +1.2 3.8 cupin compare
RR42_RS21690 +1.2 1.6 acetyltransferase compare
RR42_RS29610 +1.1 1.6 cytochrome C2 compare
RR42_RS01630 +1.1 2.0 branched-chain amino acid ABC transporter ATP-binding protein compare
RR42_RS19860 +1.1 1.9 tartronate semialdehyde reductase compare
RR42_RS23305 +1.0 1.3 hypothetical protein compare
RR42_RS08220 +1.0 1.3 hypothetical protein compare
RR42_RS07150 +1.0 1.5 hypothetical protein compare
RR42_RS03525 +1.0 1.6 type VI secretion system effector compare
RR42_RS04810 +1.0 2.4 glycine/betaine ABC transporter permease compare
RR42_RS19830 +0.9 1.9 LysR family transcriptional regulator compare
RR42_RS17805 +0.9 1.1 hypothetical protein compare
RR42_RS06445 +0.9 2.5 NAD(P)H-quinone oxidoreductase compare
RR42_RS16360 +0.9 1.6 transposase compare
RR42_RS24550 +0.8 1.2 hypothetical protein compare
RR42_RS07920 +0.8 1.4 cyclophilin-like superfamily protein compare
RR42_RS26050 +0.8 2.8 hypothetical protein compare
RR42_RS26265 +0.8 1.4 hypothetical protein compare
RR42_RS08260 +0.8 2.0 hypothetical protein compare
RR42_RS16640 +0.8 0.9 LysR family transcriptional regulator compare
RR42_RS09375 +0.8 1.2 taurine dioxygenase compare
RR42_RS36920 +0.8 1.9 TetR family transcriptional regulator compare
RR42_RS04275 +0.8 2.2 hypothetical protein compare
RR42_RS16335 +0.8 1.8 hypothetical protein compare
RR42_RS07440 +0.8 2.8 hypothetical protein compare
RR42_RS06020 +0.8 1.0 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS21505 +0.8 1.3 hypothetical protein compare
RR42_RS27065 +0.8 1.6 hypothetical protein compare
RR42_RS34535 +0.8 1.9 membrane protein compare
RR42_RS08185 +0.8 1.5 hypothetical protein compare
RR42_RS21755 +0.7 1.8 shikimate dehydrogenase compare
RR42_RS23125 +0.7 1.4 hypothetical protein compare
RR42_RS21455 +0.7 1.8 transposase compare
RR42_RS37245 +0.7 2.7 MazF family transcriptional regulator compare
RR42_RS34570 +0.7 0.9 hypothetical protein compare
RR42_RS30980 +0.7 1.9 hypothetical protein compare
RR42_RS20810 +0.7 1.7 hypothetical protein compare
RR42_RS33690 +0.7 1.0 phosphate acetyltransferase compare
RR42_RS20260 +0.7 1.7 hypothetical protein compare
RR42_RS13420 +0.7 1.7 phosphohistidine phosphatase compare
RR42_RS28400 +0.7 1.0 CoA-transferase compare
RR42_RS36795 +0.7 1.3 fumarate hydratase compare
RR42_RS03685 +0.7 1.6 GTP cyclohydrolase compare
RR42_RS04995 +0.7 2.8 single-stranded DNA-binding protein compare
RR42_RS21850 +0.7 1.7 3-oxoadipate enol-lactonase compare
RR42_RS12085 +0.7 2.2 glyoxalase compare
RR42_RS22275 +0.7 1.4 hypothetical protein compare
RR42_RS08045 +0.7 2.4 hypothetical protein compare
RR42_RS02065 +0.7 1.4 phosphate starvation-inducible protein PsiF compare
RR42_RS13835 +0.7 2.8 hypothetical protein compare
RR42_RS05780 +0.7 2.7 hypothetical protein compare
RR42_RS26455 +0.7 1.0 amino acid ABC transporter ATP-binding protein compare
RR42_RS08770 +0.7 0.8 2-nitropropane dioxygenase compare
RR42_RS01315 +0.7 2.3 GNAT family acetyltransferase compare
RR42_RS21075 +0.7 0.9 phosphoribosyltransferase compare
RR42_RS00115 +0.7 1.2 hypothetical protein compare
RR42_RS09580 +0.6 1.0 hypothetical protein compare
RR42_RS14785 +0.6 3.5 hypothetical protein compare
RR42_RS05115 +0.6 2.0 LysR family transcriptional regulator compare
RR42_RS16670 +0.6 2.0 cytochrome C compare
RR42_RS15845 +0.6 1.9 biotin transporter BioY compare
RR42_RS25510 +0.6 1.2 short-chain dehydrogenase compare
RR42_RS30735 +0.6 1.4 tRNA-Met compare
RR42_RS36770 +0.6 3.2 hypothetical protein compare
RR42_RS12370 +0.6 3.3 trans-aconitate methyltransferase compare
RR42_RS23595 +0.6 1.7 dTDP-4-dehydrorhamnose 3,5-epimerase compare
RR42_RS22030 +0.6 1.8 hypothetical protein compare
RR42_RS17425 +0.6 3.6 chemotaxis protein CheY compare
RR42_RS23370 +0.6 2.1 flagellar motor switch protein FliN compare
RR42_RS29630 +0.6 2.4 hypothetical protein compare
RR42_RS02280 +0.6 2.2 ABC transporter permease compare
RR42_RS05165 +0.6 1.4 GntR family transcriptional regulator compare
RR42_RS02685 +0.6 1.8 phosphoglycerate mutase compare
RR42_RS07705 +0.6 2.4 hypothetical protein compare
RR42_RS33970 +0.6 2.7 LysR family transcriptional regulator compare
RR42_RS30310 +0.6 1.3 signal transduction protein compare
RR42_RS12590 +0.6 0.8 50S ribosomal protein L9 compare
RR42_RS16690 +0.6 1.8 RNA signal recognition particle 4.5S RNA compare
RR42_RS22805 +0.6 3.8 LysR family transcriptional regulator compare
RR42_RS04980 +0.6 1.4 hypothetical protein compare
RR42_RS08345 +0.6 2.6 baseplate protein compare
RR42_RS28005 +0.6 1.0 phosphonate/organophosphate ester transporter subunit compare
RR42_RS16220 +0.6 1.0 DNA polymerase III subunit chi compare
RR42_RS25650 +0.6 0.9 hypothetical protein compare
RR42_RS25225 +0.6 1.3 NAD(P) transhydrogenase compare
RR42_RS31300 +0.6 1.2 TetR family transcriptional regulator compare
RR42_RS02805 +0.5 2.4 metal-dependent hydrolase compare
RR42_RS12020 +0.5 1.8 GCN5 family acetyltransferase compare
RR42_RS05750 +0.5 0.9 fructose 2,6-bisphosphatase compare
RR42_RS05895 +0.5 1.2 rhombosortase compare
RR42_RS06880 +0.5 0.5 hypothetical protein compare
RR42_RS21470 +0.5 0.5 hypothetical protein compare
RR42_RS01435 +0.5 1.4 short-chain dehydrogenase compare
RR42_RS29000 +0.5 2.2 Crp/Fnr family transcriptional regulator compare
RR42_RS22585 +0.5 1.4 MarR family transcriptional regulator compare
RR42_RS35995 +0.5 1.3 membrane protein compare
RR42_RS17970 +0.5 0.7 hypothetical protein compare
RR42_RS04350 +0.5 1.6 ABC transporter ATP-binding protein compare
RR42_RS32670 +0.5 0.7 phenol hydroxylase compare
RR42_RS02960 +0.5 1.1 triphosphoribosyl-dephospho-CoA synthase compare
RR42_RS04380 +0.5 2.4 LysR family transcriptional regulator compare
RR42_RS21720 +0.5 0.7 acetoin catabolism protein X compare
RR42_RS37055 +0.5 1.2 hypothetical protein compare
RR42_RS03680 +0.5 1.6 hypothetical protein compare
RR42_RS33175 +0.5 2.4 membrane protein compare
RR42_RS12450 +0.5 1.3 hypothetical protein compare
RR42_RS34450 +0.5 2.2 glycosyl transferase compare
RR42_RS30085 +0.5 1.9 hypothetical protein compare
RR42_RS01045 +0.5 0.8 Fur family transcriptional regulator compare
RR42_RS35755 +0.5 2.2 flagellar biosynthesis protein FlhG compare
RR42_RS34020 +0.5 2.3 hypothetical protein compare
RR42_RS02555 +0.5 1.6 transcriptional regulator compare
RR42_RS33285 +0.5 2.5 membrane protein compare
RR42_RS26355 +0.5 2.5 multidrug MFS transporter compare
RR42_RS35780 +0.5 1.1 chemotaxis protein CheY compare
RR42_RS18390 +0.5 1.7 hypothetical protein compare
RR42_RS07225 +0.5 0.9 hypothetical protein compare
RR42_RS16570 +0.5 1.5 2-nitropropane dioxygenase compare
RR42_RS36680 +0.5 1.5 hypothetical protein compare
RR42_RS00345 +0.5 0.8 LysR family transcriptional regulator compare
RR42_RS23870 +0.5 1.2 hypothetical protein compare
RR42_RS31765 +0.5 1.8 membrane protein compare
RR42_RS06965 +0.5 1.7 hypothetical protein compare
RR42_RS31040 +0.5 2.2 hypothetical protein compare
RR42_RS20965 +0.5 1.9 transferase compare
RR42_RS12235 +0.5 1.5 terminase compare
RR42_RS23335 +0.5 2.0 hypothetical protein compare
RR42_RS36445 +0.5 1.8 acetyl-CoA acetyltransferase compare
RR42_RS28800 +0.5 3.2 isocitrate dehydrogenase compare
RR42_RS02205 +0.5 1.0 succinate dehydrogenase compare
RR42_RS16185 +0.5 2.2 malonyl-CoA decarboxylase compare
RR42_RS13465 +0.5 1.7 phosphate transporter permease subunit PstC compare
RR42_RS03940 +0.5 0.9 membrane protein compare
RR42_RS21985 +0.5 1.5 sugar ABC transporter compare
RR42_RS33940 +0.5 1.3 naphthalene 1,2-dioxygenase compare
RR42_RS27850 +0.5 2.3 2-oxo-hepta-3-ene-1,7-dioate hydratase compare
RR42_RS36495 +0.5 1.4 enoyl-CoA hydratase compare
RR42_RS32960 +0.5 1.1 2-dehydropantoate 2-reductase compare
RR42_RS18380 +0.5 1.4 hypothetical protein compare
RR42_RS01705 +0.5 1.5 Fis family transcriptional regulator compare
RR42_RS10420 +0.5 1.9 hypothetical protein compare
RR42_RS24760 +0.5 0.7 hypothetical protein compare
RR42_RS14935 +0.5 2.0 biopolymer transporter ExbB compare
RR42_RS34565 +0.5 1.1 GDP-mannose mannosyl hydrolase compare
RR42_RS28240 +0.5 1.8 zinc carboxypeptidase compare
RR42_RS05945 +0.5 0.9 thioredoxin compare
RR42_RS29280 +0.5 0.7 hypothetical protein compare
RR42_RS21175 +0.5 1.1 transporter compare
RR42_RS08585 +0.5 1.4 baseplate assembly protein compare
RR42_RS11435 +0.5 1.4 ABC transporter permease compare
RR42_RS32645 +0.5 0.5 2-keto-4-pentenoate hydratase compare
RR42_RS22920 +0.5 2.1 hypothetical protein compare
RR42_RS01980 +0.5 3.7 peptidase M16 compare
RR42_RS24945 +0.5 2.1 hypothetical protein compare
RR42_RS13745 +0.5 2.1 LysR family transcriptional regulator compare
RR42_RS27095 +0.5 0.8 hypothetical protein compare
RR42_RS30360 +0.5 3.2 cytochrome C signal peptide protein compare
RR42_RS08025 +0.5 0.8 phage Gp37Gp68 compare
RR42_RS34520 +0.5 0.6 transposase compare
RR42_RS35705 +0.5 1.9 flagellar basal body rod protein FlgF compare
RR42_RS14905 +0.5 1.7 hypothetical protein compare
RR42_RS33730 +0.4 1.8 hypothetical protein compare
RR42_RS15185 +0.4 1.7 LysR family transcriptional regulator compare
RR42_RS28955 +0.4 1.7 transcriptional regulator compare
RR42_RS10445 +0.4 1.6 heat-shock protein Hsp20 compare
RR42_RS21605 +0.4 1.2 S-adenosylhomocysteine hydrolase compare
RR42_RS03730 +0.4 2.1 polyphosphate kinase compare
RR42_RS06830 +0.4 2.2 hypothetical protein compare
RR42_RS32090 +0.4 1.3 hypothetical protein compare
RR42_RS08410 +0.4 1.3 hypothetical protein compare
RR42_RS14880 +0.4 1.6 hypothetical protein compare
RR42_RS22010 +0.4 1.8 histidine kinase compare
RR42_RS36835 +0.4 0.9 cytochrome P450 compare
RR42_RS30520 +0.4 2.7 gentisate 1,2-dioxygenase compare
RR42_RS02110 +0.4 3.2 potassium transporter compare
RR42_RS24520 +0.4 1.1 hypothetical protein compare
RR42_RS27440 +0.4 2.0 hypothetical protein compare
RR42_RS27745 +0.4 1.3 hypothetical protein compare
RR42_RS24955 +0.4 1.9 LysR family transcriptional regulator compare
RR42_RS06355 +0.4 1.6 Fe-S cluster assembly protein HesB compare
RR42_RS14425 +0.4 3.0 leucine ABC transporter substrate-binding protein compare
RR42_RS37170 +0.4 1.8 MazF family transcriptional regulator compare
RR42_RS11985 +0.4 1.0 glutathione ABC transporter permease compare
RR42_RS34745 +0.4 1.3 hypothetical protein compare
RR42_RS21780 +0.4 2.3 bleomycin resistance protein compare
RR42_RS03515 +0.4 1.3 hypothetical protein compare
RR42_RS27725 +0.4 1.1 GntR family transcriptional regulator compare
RR42_RS32655 +0.4 1.5 catechol 2,3-dioxygenase compare
RR42_RS23365 +0.4 1.6 flagellar biosynthesis protein FliO compare
RR42_RS10500 +0.4 1.9 hypothetical protein compare
RR42_RS28075 +0.4 1.4 phosphonate metabolism protein PhnM compare
RR42_RS06720 +0.4 1.4 hypothetical protein compare
RR42_RS00490 +0.4 1.6 potassium-transporting ATPase subunit C compare
RR42_RS29730 +0.4 1.1 hypothetical protein compare
RR42_RS16575 +0.4 1.2 acyl-CoA dehydrogenase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Sodium butyrate in Cupriavidus basilensis FW507-4G11

For carbon source Sodium butyrate across organisms