Experiment set2IT056 for Ralstonia sp. UNC404CL21Col

Compare to:

D-Galactose carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS13250 -7.9 -5.5 phosphoserine phosphatase SerB compare
ABZR87_RS02155 -7.1 -6.9 anthranilate phosphoribosyltransferase compare
ABZR87_RS14505 -6.5 -6.4 phosphoribosylanthranilate isomerase compare
ABZR87_RS14500 -6.5 -12.6 tryptophan synthase subunit beta compare
ABZR87_RS14540 -6.5 -9.9 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS16170 -6.5 -6.3 argininosuccinate lyase compare
ABZR87_RS09445 -6.4 -17.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS01450 -6.4 -5.8 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
ABZR87_RS02160 -6.2 -7.4 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS05200 -6.2 -19.8 homoserine O-acetyltransferase compare
ABZR87_RS02570 -6.1 -24.6 glutamate synthase-related protein compare
ABZR87_RS02595 -6.1 -12.3 shikimate kinase compare
ABZR87_RS01490 -5.8 -5.4 porin conserved
ABZR87_RS14530 -5.8 -7.9 3-isopropylmalate dehydrogenase compare
ABZR87_RS02145 -5.7 -3.9 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS13790 -5.7 -13.0 chorismate synthase compare
ABZR87_RS07360 -5.7 -17.5 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS09450 -5.7 -10.8 prephenate dehydratase compare
ABZR87_RS02640 -5.6 -17.7 diaminopimelate decarboxylase compare
ABZR87_RS22920 -5.6 -5.4 phosphogluconate dehydratase compare
ABZR87_RS16140 -5.5 -20.0 phosphoenolpyruvate carboxylase compare
ABZR87_RS09465 -5.5 -9.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS22970 -5.5 -11.7 cystathionine gamma-synthase family protein compare
ABZR87_RS07380 -5.5 -15.4 FAD/FMN-binding oxidoreductase compare
ABZR87_RS14535 -5.5 -7.5 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS08630 -5.4 -11.0 dihydroorotase compare
ABZR87_RS00200 -5.3 -6.3 phosphoadenylyl-sulfate reductase compare
ABZR87_RS00835 -5.3 -3.6 argininosuccinate synthase compare
ABZR87_RS02590 -5.3 -14.3 3-dehydroquinate synthase compare
ABZR87_RS01485 -5.2 -6.2 2-dehydro-3-deoxygalactonokinase compare
ABZR87_RS08625 -5.2 -5.0 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS01810 -5.0 -5.9 glutamate 5-kinase compare
ABZR87_RS04865 -5.0 -4.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS00190 -5.0 -13.6 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS01445 -4.8 -17.6 galactonate dehydratase conserved
ABZR87_RS09935 -4.7 -6.4 amino acid aminotransferase compare
ABZR87_RS02565 -4.6 -6.4 glutamate synthase subunit beta compare
ABZR87_RS01470 -4.5 -5.7 L-arabinose ABC transporter permease AraH conserved
ABZR87_RS05590 -4.5 -5.4 orotate phosphoribosyltransferase compare
ABZR87_RS14490 -4.5 -13.0 tryptophan synthase subunit alpha compare
ABZR87_RS01475 -4.5 -12.1 L-arabinose ABC transporter ATP-binding protein AraG conserved
ABZR87_RS06770 -4.4 -9.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS01495 -4.4 -11.9 transcriptional regulator GcvA compare
ABZR87_RS05170 -4.4 -4.3 acetylglutamate kinase compare
ABZR87_RS02140 -4.4 -17.6 anthranilate synthase component I compare
ABZR87_RS01110 -4.3 -11.1 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS01465 -4.2 -8.9 SMP-30/gluconolactonase/LRE family protein conserved
ABZR87_RS12790 -4.2 -6.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS14950 -4.0 -4.4 acetolactate synthase small subunit compare
ABZR87_RS00435 -4.0 -13.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS07665 -4.0 -13.9 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS11440 -3.8 -8.6 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS00210 -3.8 -11.3 nitrite/sulfite reductase compare
ABZR87_RS13175 -3.7 -3.9 tRNA-Leu compare
ABZR87_RS01605 -3.7 -12.8 shikimate dehydrogenase compare
ABZR87_RS05100 -3.7 -8.8 RNA polymerase-binding protein DksA compare
ABZR87_RS00285 -3.5 -2.4 acetylornithine transaminase compare
ABZR87_RS00185 -3.5 -5.3 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS13300 -3.3 -12.8 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS01480 -3.2 -5.1 arabinose ABC transporter substrate-binding protein conserved
ABZR87_RS00205 -3.2 -3.2 DUF934 domain-containing protein compare
ABZR87_RS09515 -3.2 -3.0 cysteine synthase CysM compare
ABZR87_RS14955 -3.1 -5.9 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS00195 -3.0 -3.3 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS16180 -2.9 -3.4 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS04995 -2.9 -4.8 DNA topoisomerase III compare
ABZR87_RS00220 -2.8 -8.8 CysB family HTH-type transcriptional regulator compare
ABZR87_RS14380 -2.7 -8.6 glutamate racemase compare
ABZR87_RS08695 -2.5 -13.9 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS13475 -2.3 -9.0 PAS domain S-box protein compare
ABZR87_RS10785 -2.3 -7.1 exodeoxyribonuclease V subunit beta compare
ABZR87_RS07635 -2.2 -3.6 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS12795 -2.2 -6.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS04785 -2.1 -10.0 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS10610 -2.1 -2.7 inositol monophosphatase family protein compare
ABZR87_RS01645 -2.1 -5.9 type II 3-dehydroquinate dehydratase compare
ABZR87_RS11815 -2.0 -7.5 [protein-PII] uridylyltransferase compare
ABZR87_RS10820 -1.9 -6.8 LysR substrate-binding domain-containing protein compare
ABZR87_RS02480 -1.9 -2.9 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS08645 -1.9 -1.8 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS22915 -1.9 -10.1 glucose-6-phosphate dehydrogenase compare
ABZR87_RS10240 -1.9 -2.9 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS15440 -1.9 -3.5 ribonuclease G compare
ABZR87_RS07625 -1.8 -3.1 Holliday junction branch migration protein RuvA compare
ABZR87_RS10400 -1.7 -3.5 hypothetical protein compare
ABZR87_RS07700 -1.7 -3.0 peptidylprolyl isomerase compare
ABZR87_RS00875 -1.7 -5.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS06705 -1.7 -11.5 glutamate--cysteine ligase compare
ABZR87_RS09700 -1.6 -3.5 DEAD/DEAH box helicase compare
ABZR87_RS13285 -1.6 -11.1 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS09460 -1.5 -6.3 prephenate dehydrogenase compare
ABZR87_RS10780 -1.5 -4.0 PD-(D/E)XK nuclease family protein compare
ABZR87_RS05010 -1.5 -4.2 rod shape-determining protein RodA compare
ABZR87_RS02575 -1.5 -5.1 transposase compare
ABZR87_RS00215 -1.5 -3.9 sulfite exporter TauE/SafE family protein compare
ABZR87_RS16270 -1.5 -3.0 cold-shock protein compare
ABZR87_RS07705 -1.5 -3.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS11065 -1.4 -7.4 nitrogen regulation protein NR(II) compare
ABZR87_RS16960 -1.4 -4.8 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS01225 -1.4 -2.7 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS00745 -1.4 -2.3 3-hydroxyacyl-CoA dehydrogenase compare
ABZR87_RS11980 -1.4 -1.3 cold-shock protein compare
ABZR87_RS06645 -1.4 -2.2 TlpA disulfide reductase family protein compare
ABZR87_RS07050 -1.3 -1.9 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS23095 -1.3 -1.4 MarR family transcriptional regulator compare
ABZR87_RS12785 -1.2 -5.8 endopeptidase La compare
ABZR87_RS05205 -1.2 -4.6 methionine biosynthesis protein MetW compare
ABZR87_RS10195 -1.2 -3.5 signal peptidase I compare
ABZR87_RS04125 -1.2 -4.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS16165 -1.2 -1.2 anti-sigma factor compare
ABZR87_RS11015 -1.2 -5.8 amino-acid N-acetyltransferase compare
ABZR87_RS21815 -1.2 -1.2 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS06725 -1.2 -10.2 phosphoenolpyruvate--protein phosphotransferase compare
ABZR87_RS02445 -1.2 -4.8 Sec-independent protein translocase protein TatB compare
ABZR87_RS10620 -1.2 -2.4 serine O-acetyltransferase compare
ABZR87_RS16125 -1.2 -6.8 heme biosynthesis protein HemY compare
ABZR87_RS01455 -1.2 -1.4 SDR family oxidoreductase compare
ABZR87_RS07620 -1.1 -2.9 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS11925 -1.1 -8.0 phosphoenolpyruvate synthase compare
ABZR87_RS10170 -1.1 -5.7 RseA family anti-sigma factor compare
ABZR87_RS07675 -1.1 -6.8 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS14375 -1.1 -2.3 fumarate hydratase compare
ABZR87_RS11170 -1.1 -1.4 FixH family protein compare
ABZR87_RS10175 -1.1 -5.4 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS08700 -1.0 -6.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS09635 -1.0 -1.6 ribosome small subunit-dependent GTPase A compare
ABZR87_RS04945 -1.0 -3.3 DUF4390 domain-containing protein compare
ABZR87_RS01980 -1.0 -2.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS11435 -1.0 -2.8 Mth938-like domain-containing protein compare
ABZR87_RS22415 -1.0 -1.9 universal stress protein compare
ABZR87_RS11245 -1.0 -4.7 translational GTPase TypA compare
ABZR87_RS16055 -1.0 -5.2 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS17845 -0.9 -3.0 Crp/Fnr family transcriptional regulator compare
ABZR87_RS07470 -0.9 -5.3 TetR/AcrR family transcriptional regulator compare
ABZR87_RS02440 -0.9 -6.9 twin-arginine translocase subunit TatC compare
ABZR87_RS14115 -0.9 -2.3 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS04975 -0.9 -3.1 peptide deformylase compare
ABZR87_RS07435 -0.9 -2.7 DUF502 domain-containing protein compare
ABZR87_RS05060 -0.9 -3.0 DUF484 family protein compare
ABZR87_RS06715 -0.9 -2.3 PTS sugar transporter subunit IIA compare
ABZR87_RS07005 -0.9 -1.5 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS21795 -0.9 -4.3 NUDIX domain-containing protein compare
ABZR87_RS01675 -0.9 -1.8 carbohydrate kinase family protein compare
ABZR87_RS16735 -0.9 -7.3 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS13010 -0.9 -1.6 GPW/gp25 family protein compare
ABZR87_RS06710 -0.9 -7.2 glutathione synthase compare
ABZR87_RS10980 -0.9 -1.9 tRNA-Leu compare
ABZR87_RS12070 -0.9 -2.1 porin compare
ABZR87_RS06495 -0.9 -1.4 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS04105 -0.9 -2.7 ATP synthase subunit I compare
ABZR87_RS08640 -0.8 -3.6 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS09650 -0.8 -5.0 molybdopterin adenylyltransferase compare
ABZR87_RS07965 -0.8 -3.8 recombinase RecA compare
ABZR87_RS01270 -0.8 -4.7 ATP-dependent DNA helicase RecG compare
ABZR87_RS22910 -0.8 -1.5 6-phosphogluconolactonase compare
ABZR87_RS15705 -0.8 -2.3 UvrD-helicase domain-containing protein compare
ABZR87_RS00795 -0.8 -2.1 site-specific tyrosine recombinase XerD compare
ABZR87_RS11070 -0.8 -4.8 nitrogen regulation protein NR(I) compare
ABZR87_RS13290 -0.8 -4.0 3-ketoacyl-ACP reductase compare
ABZR87_RS05065 -0.8 -2.4 tyrosine recombinase XerC compare
ABZR87_RS11940 -0.8 -2.8 SsrA-binding protein SmpB compare
ABZR87_RS01430 -0.8 -6.7 LysR family transcriptional regulator compare
ABZR87_RS11265 -0.8 -1.9 amino acid ABC transporter ATP-binding protein compare
ABZR87_RS01035 -0.8 -4.2 histidine utilization repressor compare
ABZR87_RS12800 -0.8 -3.6 trigger factor compare
ABZR87_RS10120 -0.8 -1.6 YceD family protein compare
ABZR87_RS05350 -0.8 -2.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS17970 -0.8 -1.9 methyl-accepting chemotaxis protein compare
ABZR87_RS12960 -0.8 -1.0 head completion/stabilization protein compare
ABZR87_RS10085 -0.8 -1.7 Rne/Rng family ribonuclease compare
ABZR87_RS17695 -0.8 -1.9 helix-turn-helix transcriptional regulator compare
ABZR87_RS05025 -0.8 -1.7 rod shape-determining protein MreC compare
ABZR87_RS04940 -0.8 -4.8 PAS domain-containing sensor histidine kinase compare
ABZR87_RS01800 -0.8 -3.7 RNA pyrophosphohydrolase compare
ABZR87_RS11625 -0.7 -4.9 malate synthase A compare
ABZR87_RS07035 -0.7 -4.3 RNase adapter RapZ compare
ABZR87_RS14235 -0.7 -4.6 formyltetrahydrofolate deformylase compare
ABZR87_RS06745 -0.7 -3.5 S41 family peptidase compare
ABZR87_RS16225 -0.7 -1.8 twin-arginine translocation signal domain-containing protein compare
ABZR87_RS04500 -0.7 -1.6 hypothetical protein compare
ABZR87_RS15065 -0.7 -3.0 TMEM165/GDT1 family protein compare
ABZR87_RS17565 -0.7 -1.3 helix-turn-helix transcriptional regulator compare
ABZR87_RS12120 -0.7 -1.1 isocitrate lyase/phosphoenolpyruvate mutase family protein compare
ABZR87_RS10525 -0.7 -0.7 L-threonylcarbamoyladenylate synthase compare
ABZR87_RS16130 -0.7 -3.4 fused uroporphyrinogen-III synthase HemD/membrane protein HemX compare
ABZR87_RS14495 -0.7 -2.3 site-specific DNA-methyltransferase compare
ABZR87_RS21345 -0.7 -2.7 tRNA-OTHER compare
ABZR87_RS04160 -0.7 -1.9 LysR family transcriptional regulator compare
ABZR87_RS13645 -0.7 -0.9 hypothetical protein compare
ABZR87_RS21585 -0.7 -2.2 multidrug efflux SMR transporter compare
ABZR87_RS13540 -0.7 -1.8 DUF1488 family protein compare
ABZR87_RS16230 -0.6 -5.3 molecular chaperone compare
ABZR87_RS20495 -0.6 -1.1 hypothetical protein compare
ABZR87_RS02150 -0.6 -1.9 lysozyme inhibitor LprI family protein compare
ABZR87_RS13750 -0.6 -2.7 RidA family protein compare
ABZR87_RS02075 -0.6 -0.8 23S ribosomal RNA compare
ABZR87_RS01670 -0.6 -1.8 thiol peroxidase compare
ABZR87_RS00830 -0.6 -1.5 pyrimidine/purine nucleoside phosphorylase compare
ABZR87_RS08235 -0.6 -0.9 hypothetical protein compare
ABZR87_RS11770 -0.6 -3.1 succinyldiaminopimelate transaminase compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source D-Galactose in Ralstonia sp. UNC404CL21Col

For carbon source D-Galactose across organisms