Experiment set2IT056 for Burkholderia phytofirmans PsJN

Compare to:

LB, pH4

200 most important genes:

  gene name fitness t score description  
BPHYT_RS14050 -8.0 -6.2 UDP pyrophosphate phosphatase compare
BPHYT_RS16210 -7.8 -5.3 peptidase compare
BPHYT_RS17685 -6.9 -11.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS13770 -6.5 -17.0 RND transporter compare
BPHYT_RS17690 -6.3 -14.0 imidazole glycerol phosphate synthase compare
BPHYT_RS33580 -6.1 -5.9 geranyltranstransferase compare
BPHYT_RS17670 -5.8 -6.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS34815 -5.7 -3.9 ABC transporter compare
BPHYT_RS34805 -5.5 -13.3 ABC transporter compare
BPHYT_RS17680 -5.5 -6.1 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS08850 -5.5 -3.7 transcriptional regulator compare
BPHYT_RS06190 -5.4 -6.3 heptosyltransferase compare
BPHYT_RS13785 -5.3 -12.2 membrane protein compare
BPHYT_RS34810 -5.2 -7.3 RND transporter compare
BPHYT_RS01625 -5.2 -5.0 chemotaxis protein CheY compare
BPHYT_RS04370 -5.2 -2.6 glycosyl transferase compare
BPHYT_RS15920 -5.1 -15.7 argininosuccinate synthase compare
BPHYT_RS14855 -4.9 -4.1 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS14845 -4.9 -4.7 cysteine synthase compare
BPHYT_RS17745 -4.8 -9.5 toluene tolerance family protein compare
BPHYT_RS17675 -4.8 -3.7 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS17760 -4.7 -9.7 ABC transporter permease compare
BPHYT_RS11390 -4.6 -10.5 penicillin-binding protein 1A compare
BPHYT_RS23840 -4.5 -4.1 methyltransferase compare
BPHYT_RS34780 -4.5 -5.3 phytoene synthase compare
BPHYT_RS21350 -4.5 -3.9 ADP-glucose pyrophosphorylase compare
BPHYT_RS12530 -4.5 -5.1 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS23985 -4.4 -8.5 carbohydrate porin compare
BPHYT_RS17765 -4.4 -8.0 toluene ABC transporter ATP-binding protein compare
BPHYT_RS14190 -4.4 -12.0 carbamoyl phosphate synthase large subunit compare
BPHYT_RS01485 -4.3 -1.5 histidine kinase compare
BPHYT_RS15915 -4.2 -13.0 ornithine carbamoyltransferase compare
BPHYT_RS17715 -4.1 -7.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS15620 -4.1 -5.6 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS17700 -3.9 -3.8 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS13775 -3.7 -9.0 fusaric acid resistance protein compare
BPHYT_RS21335 -3.7 -3.4 CDP-alcohol phosphatidyltransferase compare
BPHYT_RS14865 -3.6 -4.3 UDP-glucose 6-dehydrogenase compare
BPHYT_RS15075 -3.4 -3.1 dihydrokaempferol 4-reductase compare
BPHYT_RS29750 -3.3 -9.7 phosphoenolpyruvate phosphomutase compare
BPHYT_RS29740 -3.1 -7.4 2-aminoethylphosphonate aminotransferase compare
BPHYT_RS06175 -3.1 -9.6 LPS biosynthesis compare
BPHYT_RS08960 -3.0 -2.5 threonine synthase compare
BPHYT_RS29745 -3.0 -4.4 phosphonopyruvate decarboxylase compare
BPHYT_RS09315 -3.0 -1.7 chemotaxis protein CheY compare
BPHYT_RS17920 -2.8 -2.3 protein CyaY compare
BPHYT_RS01435 -2.8 -18.9 LysR family transcriptional regulator compare
BPHYT_RS02610 -2.7 -8.2 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS06990 -2.6 -2.5 membrane protein compare
BPHYT_RS02590 -2.6 -12.4 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS17755 -2.5 -4.0 ABC transporter substrate-binding protein compare
BPHYT_RS23740 -2.5 -8.7 AraC family transcriptional regulator compare
BPHYT_RS02975 -2.5 -3.1 membrane protein compare
BPHYT_RS02860 -2.5 -1.9 membrane protein compare
BPHYT_RS04385 -2.5 -4.4 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS02285 -2.4 -5.1 cell division protein compare
BPHYT_RS09480 -2.4 -2.1 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS17265 -2.3 -1.9 cell division protein compare
BPHYT_RS12785 -2.3 -4.9 Rrf2 family transcriptional regulator compare
BPHYT_RS16835 -2.3 -8.6 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS16270 -2.3 -6.0 phosphoglycerate kinase compare
BPHYT_RS30490 -2.3 -1.3 2-haloalkanoic acid dehalogenase compare
BPHYT_RS04285 -2.3 -3.1 rhamnosyltransferase compare
BPHYT_RS12990 -2.2 -2.6 iron transporter compare
BPHYT_RS16215 -2.2 -7.1 sensor histidine kinase compare
BPHYT_RS09330 -2.1 -13.0 phytoene synthase compare
BPHYT_RS04965 -2.1 -8.0 ATP-binding protein compare
BPHYT_RS22190 -2.1 -1.7 nucleoid-structuring protein H-NS compare
BPHYT_RS21340 -2.1 -6.0 2OG-Fe(II) oxygenase compare
BPHYT_RS36275 -2.0 -2.0 hypothetical protein compare
BPHYT_RS03280 -2.0 -2.0 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS03480 -2.0 -4.7 ferritin compare
BPHYT_RS17945 -2.0 -2.6 cytochrome C biogenesis protein compare
BPHYT_RS15615 -2.0 -3.8 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS02865 -2.0 -3.3 hypothetical protein compare
BPHYT_RS09500 -2.0 -8.8 glucose-6-phosphate isomerase compare
BPHYT_RS15710 -2.0 -3.2 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS04290 -2.0 -3.1 glycosyl transferase family 2 compare
BPHYT_RS08965 -2.0 -6.3 molybdenum cofactor biosynthesis protein MoaA compare
BPHYT_RS17890 -1.9 -2.3 shikimate kinase compare
BPHYT_RS02690 -1.9 -11.3 protoheme IX farnesyltransferase compare
BPHYT_RS14195 -1.9 -2.8 carbamoyl phosphate synthase small subunit compare
BPHYT_RS17240 -1.8 -1.7 cell division protein FtsW compare
BPHYT_RS30795 -1.8 -1.9 short-chain dehydrogenase compare
BPHYT_RS02540 -1.8 -2.0 hypothetical protein compare
BPHYT_RS17520 -1.7 -6.0 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS12845 -1.7 -11.7 ATPase compare
BPHYT_RS14495 -1.6 -6.7 molybdopterin-guanine dinucleotide biosynthesis protein A compare
BPHYT_RS06900 -1.6 -5.5 aspartate aminotransferase compare
BPHYT_RS14550 -1.6 -1.6 tRNA-Asn compare
BPHYT_RS16175 -1.6 -3.0 hemolysin D compare
BPHYT_RS15415 -1.6 -11.2 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS17100 -1.6 -5.9 RNA pyrophosphohydrolase compare
BPHYT_RS26025 -1.6 -1.3 hypothetical protein compare
BPHYT_RS16255 -1.6 -4.7 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS06530 -1.5 -1.4 membrane protein compare
BPHYT_RS16710 -1.5 -1.8 LysR family transcriptional regulator compare
BPHYT_RS08565 -1.5 -1.9 dihydroorotate dehydrogenase compare
BPHYT_RS06610 -1.5 -1.7 triosephosphate isomerase compare
BPHYT_RS33610 -1.5 -2.1 DNA polymerase I compare
BPHYT_RS14715 -1.5 -7.6 molybdenum cofactor biosynthesis protein MogA compare
BPHYT_RS34825 -1.5 -7.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS16675 -1.4 -2.9 dihydroorotase compare
BPHYT_RS25870 -1.4 -1.3 type III secretion system ATPase compare
BPHYT_RS30140 -1.4 -1.8 3-methylitaconate isomerase compare
BPHYT_RS12055 -1.4 -11.2 phosphoenolpyruvate synthase compare
BPHYT_RS14490 -1.4 -10.1 molybdenum cofactor biosynthesis protein MoeA compare
BPHYT_RS16320 -1.4 -4.9 cyclic pyranopterin monophosphate synthase accessory protein compare
BPHYT_RS23940 -1.4 -2.0 GntR family transcriptional regulator compare
BPHYT_RS03240 -1.4 -4.4 formate dehydrogenase accessory protein FdhD compare
BPHYT_RS02525 -1.4 -7.6 membrane protein compare
BPHYT_RS13245 -1.4 -4.3 hypothetical protein compare
BPHYT_RS35100 -1.4 -2.6 ABC transporter substrate-binding protein compare
BPHYT_RS17095 -1.4 -2.9 proline--tRNA ligase compare
BPHYT_RS06975 -1.3 -2.3 glutamate racemase compare
BPHYT_RS08975 -1.3 -3.7 molybdenum cofactor biosynthesis protein MoaE compare
BPHYT_RS06400 -1.3 -4.3 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS12840 -1.3 -3.4 pyruvate dehydrogenase compare
BPHYT_RS33690 -1.3 -2.2 molybdate ABC transporter permease compare
BPHYT_RS09515 -1.3 -5.2 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS06985 -1.3 -8.0 fumarate hydratase compare
BPHYT_RS14500 -1.3 -2.6 molybdenum cofactor biosynthesis protein MoaA compare
BPHYT_RS09445 -1.3 -4.3 trigger factor compare
BPHYT_RS06195 -1.3 -2.3 membrane protein compare
BPHYT_RS01955 -1.3 -3.6 hypothetical protein compare
BPHYT_RS19535 -1.2 -7.4 XRE family transcriptional regulator compare
BPHYT_RS33850 -1.2 -1.9 sporulation protein compare
BPHYT_RS16245 -1.2 -5.2 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS06555 -1.2 -6.6 ketol-acid reductoisomerase compare
BPHYT_RS14370 -1.2 -2.7 ribonuclease III compare
BPHYT_RS02650 -1.2 -1.7 membrane protein compare
BPHYT_RS16840 -1.2 -3.0 transketolase compare
BPHYT_RS12925 -1.2 -1.3 exodeoxyribonuclease III compare
BPHYT_RS23830 -1.2 -1.8 acetyl-CoA hydrolase compare
BPHYT_RS12535 -1.2 -1.4 membrane protein compare
BPHYT_RS17530 -1.2 -4.8 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS06075 -1.1 -3.8 hypothetical protein compare
BPHYT_RS06045 -1.1 -5.4 transaldolase compare
BPHYT_RS14380 -1.1 -4.3 elongation factor 4 compare
BPHYT_RS12615 -1.1 -1.6 dihydrodipicolinate synthase compare
BPHYT_RS13200 -1.1 -1.5 molybdopterin binding oxidoreductase compare
BPHYT_RS15190 -1.1 -1.9 acyl carrier protein compare
BPHYT_RS19680 -1.1 -7.6 glutamate--cysteine ligase compare
BPHYT_RS33685 -1.1 -7.0 molybdate ABC transporter substrate-binding protein compare
BPHYT_RS19540 -1.1 -6.9 sensor histidine kinase compare
BPHYT_RS24905 -1.1 -6.2 hypothetical protein compare
BPHYT_RS24910 -1.1 -6.8 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS04335 -1.1 -1.5 membrane protein compare
BPHYT_RS02570 -1.1 -3.3 phosphocarrier protein HPr compare
BPHYT_RS30145 -1.1 -5.4 aconitate hydratase compare
BPHYT_RS06775 -1.0 -2.8 nucleotide-binding protein compare
BPHYT_RS20665 -1.0 -0.9 LysR family transcriptional regulator compare
BPHYT_RS03410 -1.0 -2.5 queuine tRNA-ribosyltransferase compare
BPHYT_RS00770 -1.0 -1.2 conjugal transfer protein TraC compare
BPHYT_RS12510 -1.0 -1.7 RNA-binding protein compare
BPHYT_RS26855 -1.0 -3.2 carboxyvinyl-carboxyphosphonate phosphorylmutase compare
BPHYT_RS03400 -1.0 -1.3 ATP-dependent DNA helicase RecG compare
BPHYT_RS24930 -1.0 -3.4 cytochrome C oxidase subunit III compare
BPHYT_RS09290 -1.0 -6.3 helicase compare
BPHYT_RS12280 -1.0 -1.4 RNA helicase compare
BPHYT_RS16455 -1.0 -6.7 ferritin compare
BPHYT_RS00980 -0.9 -1.0 GCN5 family acetyltransferase compare
BPHYT_RS14945 -0.9 -2.1 phosphoglycolate phosphatase compare
BPHYT_RS23815 -0.9 -3.2 LysR family transcriptional regulator compare
BPHYT_RS17885 -0.9 -4.3 3-dehydroquinate synthase compare
BPHYT_RS30485 -0.9 -1.2 ABC transporter ATP-binding protein compare
BPHYT_RS33615 -0.9 -3.1 decarboxylase compare
BPHYT_RS02640 -0.9 -6.4 cytochrome C oxidase compare
BPHYT_RS21505 -0.9 -1.3 amidohydrolase compare
BPHYT_RS06920 -0.9 -4.1 iron permease FTR1 compare
BPHYT_RS18340 -0.9 -1.9 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS08945 -0.9 -6.0 hypothetical protein compare
BPHYT_RS02135 -0.9 -2.1 glyoxylate reductase compare
BPHYT_RS06375 -0.9 -3.3 ribonuclease compare
BPHYT_RS05620 -0.9 -1.2 CsbD family protein compare
BPHYT_RS18705 -0.9 -1.2 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS08955 -0.9 -2.9 homoserine dehydrogenase compare
BPHYT_RS09155 -0.9 -3.4 3-ketoacyl-ACP reductase compare
BPHYT_RS02685 -0.9 -4.0 cytochrome C oxidase subunit I compare
BPHYT_RS13605 -0.9 -0.8 tRNA-Pro compare
BPHYT_RS11755 -0.9 -1.3 spermidine/putrescine ABC transporter substrate-binding protein compare
BPHYT_RS05185 -0.9 -6.1 chloride channel protein compare
BPHYT_RS17445 -0.9 -2.9 GTP-binding protein YchF compare
BPHYT_RS28955 -0.8 -2.0 hypothetical protein compare
BPHYT_RS21620 -0.8 -1.4 GCN5 family acetyltransferase compare
BPHYT_RS28350 -0.8 -1.6 fatty acid desaturase compare
BPHYT_RS21445 -0.8 -2.0 sugar ABC transporter ATP-binding protein compare
BPHYT_RS19335 -0.8 -2.2 hypothetical protein compare
BPHYT_RS03570 -0.8 -4.4 heat-inducible transcription repressor HrcA compare
BPHYT_RS10065 -0.8 -1.5 cytochrome C oxidase subunit I compare
BPHYT_RS31345 -0.8 -1.0 malonate transporter compare
BPHYT_RS23315 -0.8 -1.5 hypothetical protein compare
BPHYT_RS09835 -0.8 -1.2 uroporphyrin-III C-methyltransferase compare
BPHYT_RS32240 -0.8 -1.0 chromosome replication initiation inhibitor protein compare
BPHYT_RS14895 -0.8 -3.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS13070 -0.8 -4.9 oxidoreductase molybdopterin subunit compare
BPHYT_RS24680 -0.8 -2.2 hypothetical protein compare
BPHYT_RS33155 -0.8 -1.8 hypothetical protein compare
BPHYT_RS12465 -0.8 -1.8 inositol monophosphatase compare
BPHYT_RS07760 -0.8 -1.6 diguanylate phosphodiesterase compare


Specific Phenotypes

For 9 genes in this experiment