Experiment set2IT056 for Burkholderia phytofirmans PsJN

Compare to:

LB, pH4

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS16065 +1.6 1.9 LacI family transcriptional regulator compare
BPHYT_RS18835 +1.3 2.6 flagellar biosynthesis protein FliR compare
BPHYT_RS01795 +1.2 8.1 histidine kinase compare
BPHYT_RS01115 +1.2 3.7 hypothetical protein compare
BPHYT_RS02965 +1.1 3.5 membrane protein compare
BPHYT_RS01790 +1.0 8.5 LuxR family transcriptional regulator compare
BPHYT_RS33535 +1.0 9.0 RNA polymerase sigma factor RpoD compare
BPHYT_RS21805 +1.0 2.6 transcriptional regulator compare
BPHYT_RS06105 +1.0 1.5 hypothetical protein compare
BPHYT_RS27940 +1.0 3.3 FAD-binding protein compare
BPHYT_RS21215 +1.0 3.7 Crp/Fnr family transcriptional regulator compare
BPHYT_RS23230 +0.9 2.2 histidine kinase compare
BPHYT_RS25165 +0.9 2.8 HTH-type transcriptional regulator BetI compare
BPHYT_RS18965 +0.9 2.3 chemotaxis protein CheY compare
BPHYT_RS07425 +0.9 1.3 hypothetical protein compare
BPHYT_RS26525 +0.9 1.7 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS13470 +0.9 1.2 arylsulfate sulfotransferase compare
BPHYT_RS31675 +0.9 2.6 hypothetical protein compare
BPHYT_RS19025 +0.9 5.9 transcriptional regulator compare
BPHYT_RS33870 +0.9 3.5 DNA methylase N-4 compare
BPHYT_RS33540 +0.8 2.3 hypothetical protein compare
BPHYT_RS36140 +0.8 1.7 hypothetical protein compare
BPHYT_RS02760 +0.8 3.4 cytochrome BD oxidase subunit II compare
BPHYT_RS30610 +0.8 1.7 major facilitator transporter compare
BPHYT_RS05650 +0.8 1.5 hypothetical protein compare
BPHYT_RS09860 +0.8 1.0 pilus assembly protein PilP compare
BPHYT_RS25075 +0.8 1.4 AraC family transcriptional regulator compare
BPHYT_RS32210 +0.8 0.5 hypothetical protein compare
BPHYT_RS08665 +0.8 1.1 hypothetical protein compare
BPHYT_RS23705 +0.8 6.6 hypothetical protein compare
BPHYT_RS08415 +0.8 1.7 hypothetical protein compare
BPHYT_RS06120 +0.8 2.9 heat-shock protein compare
BPHYT_RS35565 +0.8 2.4 activator of HSP90 ATPase compare
BPHYT_RS28660 +0.8 1.0 polyvinylalcohol dehydrogenase compare
BPHYT_RS23100 +0.8 1.0 sugar ABC transporter substrate-binding protein compare
BPHYT_RS31050 +0.8 1.1 epimerase compare
BPHYT_RS28575 +0.8 1.1 transcriptional regulator compare
BPHYT_RS02295 +0.7 1.9 hypothetical protein compare
BPHYT_RS15890 +0.7 1.3 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
BPHYT_RS10040 +0.7 1.1 hypothetical protein compare
BPHYT_RS35615 +0.7 2.5 hypothetical protein compare
BPHYT_RS08995 +0.7 1.6 hypothetical protein compare
BPHYT_RS02660 +0.7 1.1 membrane protein compare
BPHYT_RS23500 +0.7 1.8 hypothetical protein compare
BPHYT_RS13265 +0.7 1.6 hypothetical protein compare
BPHYT_RS27175 +0.7 1.0 DNA-binding protein compare
BPHYT_RS07190 +0.7 3.3 acetyltransferase compare
BPHYT_RS36130 +0.7 1.5 hypothetical protein compare
BPHYT_RS09815 +0.7 1.4 malate synthase compare
BPHYT_RS23250 +0.7 1.8 hypothetical protein compare
BPHYT_RS19985 +0.7 1.0 CoA-transferase compare
BPHYT_RS09850 +0.7 1.5 molybdopterin oxidoreductase compare
BPHYT_RS10400 +0.7 1.0 taurine ABC transporter permease compare
BPHYT_RS02010 +0.7 1.7 copper homeostasis protein CutC compare
BPHYT_RS05190 +0.7 2.5 ADP-heptose--LPS heptosyltransferase compare
BPHYT_RS30995 +0.7 0.8 glucose-1-phosphate thymidylyltransferase compare
BPHYT_RS30815 +0.7 2.9 2-methylcitrate dehydratase compare
BPHYT_RS17490 +0.7 1.6 haloacid dehalogenase compare
BPHYT_RS24235 +0.7 3.0 4-hydroxyacetophenone monooxygenase compare
BPHYT_RS03015 +0.7 0.9 aldolase compare
BPHYT_RS11705 +0.7 1.2 hypothetical protein compare
BPHYT_RS05570 +0.7 1.5 hypothetical protein compare
BPHYT_RS16335 +0.7 1.0 membrane protein compare
BPHYT_RS13555 +0.7 1.0 acyl-CoA dehydrogenase compare
BPHYT_RS04490 +0.6 1.6 hypothetical protein compare
BPHYT_RS32365 +0.6 1.6 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS01985 +0.6 1.9 hypothetical protein compare
BPHYT_RS11150 +0.6 2.3 LysR family transcriptional regulator compare
BPHYT_RS36090 +0.6 1.6 hypothetical protein compare
BPHYT_RS02765 +0.6 1.9 cytochrome BD oxidase subunit I compare
BPHYT_RS29065 +0.6 1.9 hypothetical protein compare
BPHYT_RS02235 +0.6 1.8 beta carbonic anhydrase compare
BPHYT_RS19020 +0.6 4.0 transcriptional regulator compare
BPHYT_RS29410 +0.6 2.2 HPr kinase compare
BPHYT_RS05870 +0.6 2.6 hypothetical protein compare
BPHYT_RS31320 +0.6 1.5 hypothetical protein compare
BPHYT_RS11005 +0.6 1.7 chromate transporter compare
BPHYT_RS20970 +0.6 1.3 hypothetical protein compare
BPHYT_RS29855 +0.6 0.8 protein-tyrosine-phosphatase compare
BPHYT_RS22045 +0.6 2.0 peptide ABC transporter permease compare
BPHYT_RS14480 +0.6 4.0 ribosomal large subunit pseudouridine synthase C compare
BPHYT_RS35645 +0.6 2.8 porin compare
BPHYT_RS35590 +0.6 2.1 tryptophanyl-tRNA synthetase compare
BPHYT_RS14070 +0.6 2.4 hypothetical protein compare
BPHYT_RS20775 +0.6 1.2 3-ketoacyl-ACP reductase compare
BPHYT_RS13275 +0.6 1.9 methyltransferase compare
BPHYT_RS34155 +0.6 1.3 3-hydroxybutyryl-CoA dehydrogenase compare
BPHYT_RS04215 +0.6 1.9 hypothetical protein compare
BPHYT_RS25980 +0.6 0.8 urea carboxylase compare
BPHYT_RS17185 +0.6 4.1 N-acetylglutamate synthase compare
BPHYT_RS21765 +0.6 1.4 IclR family transcriptional regulator compare
BPHYT_RS35215 +0.6 0.6 dehydrogenase compare
BPHYT_RS13385 +0.6 2.2 hypothetical protein compare
BPHYT_RS30865 +0.6 2.4 sugar ABC transporter ATP-binding protein compare
BPHYT_RS28995 +0.6 1.6 histidine kinase compare
BPHYT_RS21925 +0.6 2.0 formimidoylglutamase compare
BPHYT_RS21860 +0.6 1.0 hypothetical protein compare
BPHYT_RS34975 +0.6 1.8 L-aspartate dehydrogenase compare
BPHYT_RS13285 +0.6 1.9 amino acid ABC transporter ATP-binding protein compare
BPHYT_RS22820 +0.6 0.9 hydrolase compare
BPHYT_RS08405 +0.6 1.1 hypothetical protein compare
BPHYT_RS10465 +0.6 2.4 hypothetical protein compare
BPHYT_RS12690 +0.6 2.0 hypothetical protein compare
BPHYT_RS29015 +0.6 1.3 RND transporter compare
BPHYT_RS20880 +0.5 0.7 polyketide cyclase compare
BPHYT_RS10410 +0.5 2.5 monooxygenase compare
BPHYT_RS20115 +0.5 1.6 transcriptional regulator compare
BPHYT_RS23350 +0.5 1.3 NAD-dependent epimerase/dehydratase compare
BPHYT_RS36245 +0.5 1.6 hypothetical protein compare
BPHYT_RS32870 +0.5 1.8 hypothetical protein compare
BPHYT_RS02770 +0.5 3.1 membrane protein compare
BPHYT_RS24305 +0.5 2.3 glutathione S-transferase compare
BPHYT_RS10470 +0.5 0.9 hypothetical protein compare
BPHYT_RS26775 +0.5 1.3 chemotaxis protein CheB compare
BPHYT_RS12160 +0.5 2.4 peptide deformylase compare
BPHYT_RS27295 +0.5 0.6 hypothetical protein compare
BPHYT_RS22320 +0.5 1.9 hypothetical protein compare
BPHYT_RS30440 +0.5 1.9 short-chain dehydrogenase compare
BPHYT_RS08190 +0.5 0.9 type II secretion system protein compare
BPHYT_RS26715 +0.5 1.5 GTP-binding protein compare
BPHYT_RS02985 +0.5 1.3 MaoC family dehydratase compare
BPHYT_RS22270 +0.5 2.2 membrane protein compare
BPHYT_RS33370 +0.5 0.9 LysR family transcriptional regulator compare
BPHYT_RS07570 +0.5 0.8 hypothetical protein compare
BPHYT_RS22300 +0.5 1.2 hypothetical protein compare
BPHYT_RS18420 +0.5 0.8 hypothetical protein compare
BPHYT_RS32200 +0.5 1.4 lytic transglycosylase compare
BPHYT_RS36150 +0.5 1.4 hypothetical protein compare
BPHYT_RS20715 +0.5 1.2 peptidase compare
BPHYT_RS27655 +0.5 1.0 potassium transporter compare
BPHYT_RS35300 +0.5 1.6 flavin reductase compare
BPHYT_RS20430 +0.5 1.1 3-dehydroquinate dehydratase compare
BPHYT_RS09160 +0.5 2.5 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS09225 +0.5 1.7 LysR family transcriptional regulator compare
BPHYT_RS26915 +0.5 1.9 Fis family transcriptional regulator compare
BPHYT_RS35225 +0.5 2.4 RNA polymerase subunit sigma-24 compare
BPHYT_RS20905 +0.5 1.0 hypothetical protein compare
BPHYT_RS23460 +0.5 0.7 AraC family transcriptional regulator compare
BPHYT_RS00920 +0.5 1.9 transposase compare
BPHYT_RS26825 +0.5 1.2 quercetin 2,3-dioxygenase compare
BPHYT_RS09910 +0.5 1.7 tyramine oxidase compare
BPHYT_RS34040 +0.5 2.2 hypothetical protein compare
BPHYT_RS19030 +0.5 2.9 glycosyl transferase compare
BPHYT_RS11530 +0.5 1.6 5-hydroxyisourate hydrolase compare
BPHYT_RS31720 +0.5 1.9 LysR family transcriptional regulator compare
BPHYT_RS26920 +0.5 2.2 major facilitator transporter compare
BPHYT_RS26875 +0.5 2.8 procollagen-proline dioxygenase compare
BPHYT_RS02025 +0.5 3.0 peptide ABC transporter permease compare
BPHYT_RS11825 +0.5 0.7 cytosine deaminase compare
BPHYT_RS09010 +0.5 2.1 4-carboxymuconolactone decarboxylase compare
BPHYT_RS09735 +0.5 1.3 glycosyl transferase compare
BPHYT_RS35735 +0.5 0.6 nitroreductase compare
BPHYT_RS31030 +0.5 1.5 tyrosine protein kinase compare
BPHYT_RS33460 +0.5 0.7 protocatechuate 3,4-dioxygenase subunit alpha compare
BPHYT_RS31020 +0.5 1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BPHYT_RS28690 +0.5 0.7 diguanylate phosphodiesterase compare
BPHYT_RS09970 +0.5 1.5 glutathione S-transferase compare
BPHYT_RS18775 +0.5 3.5 flagellar M-ring protein FliF compare
BPHYT_RS10205 +0.5 1.2 D-lactate dehydrogenase compare
BPHYT_RS16855 +0.5 3.2 16S rRNA methyltransferase compare
BPHYT_RS16250 +0.5 0.7 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS08770 +0.5 1.4 universal stress protein A compare
BPHYT_RS13600 +0.5 1.7 thioesterase compare
BPHYT_RS29835 +0.5 1.5 glycosyltransferase compare
BPHYT_RS29605 +0.5 1.1 hypothetical protein compare
BPHYT_RS26890 +0.5 2.6 LysR family transcriptional regulator compare
BPHYT_RS03375 +0.5 1.0 NAD(P) transhydrogenase compare
BPHYT_RS11930 +0.5 1.1 3-hydroxybutyrate dehydrogenase compare
BPHYT_RS02365 +0.5 0.7 hypothetical protein compare
BPHYT_RS19660 +0.5 1.0 hypothetical protein compare
BPHYT_RS33150 +0.5 0.7 beta-lactamase compare
BPHYT_RS27210 +0.5 1.5 alcohol dehydrogenase compare
BPHYT_RS23440 +0.5 2.6 alcohol dehydrogenase compare
BPHYT_RS02970 +0.5 4.3 excinuclease ABC subunit A compare
BPHYT_RS29820 +0.5 1.2 hypothetical protein compare
BPHYT_RS06805 +0.5 2.9 hypothetical protein compare
BPHYT_RS08880 +0.5 2.0 phosphate transport regulator compare
BPHYT_RS35025 +0.5 2.2 sarcosine oxidase compare
BPHYT_RS10680 +0.5 1.6 LysR family transcriptional regulator compare
BPHYT_RS22560 +0.5 1.7 flagellar transcriptional regulator FlhD compare
BPHYT_RS13325 +0.5 1.6 TetR family transcriptional regulator compare
BPHYT_RS08000 +0.5 1.1 antibiotic biosynthesis monooxygenase compare
BPHYT_RS22470 +0.5 0.8 hydrolase compare
BPHYT_RS09345 +0.5 1.4 TetR family transcriptional regulator compare
BPHYT_RS06795 +0.5 2.9 membrane protein compare
BPHYT_RS26030 +0.5 1.2 cysteine hydrolase compare
BPHYT_RS05195 +0.5 1.7 hypothetical protein compare
BPHYT_RS22710 +0.5 1.5 XRE family transcriptional regulator compare
BPHYT_RS10440 +0.5 2.0 GntR family transcriptional regulator compare
BPHYT_RS27705 +0.5 1.8 universal stress protein A compare
BPHYT_RS31520 +0.5 2.2 LysR family transcriptional regulator compare
BPHYT_RS11970 +0.5 0.8 cupin compare
BPHYT_RS22420 +0.5 0.9 membrane protein compare
BPHYT_RS15550 +0.5 1.7 transcriptional regulator compare
BPHYT_RS36440 +0.5 1.3 hypothetical protein compare
BPHYT_RS11010 +0.5 0.7 chromate transporter compare
BPHYT_RS34225 +0.5 2.0 L-fucose dehydrogenase (EC 1.1.1.122) (from data) compare
BPHYT_RS27445 +0.5 1.4 hypothetical protein compare
BPHYT_RS26040 +0.5 1.1 cysteine hydrolase compare
BPHYT_RS00750 +0.5 1.2 SpoVT/AbrB domain-containing protein compare


Specific Phenotypes

For 9 genes in this experiment