Experiment set2IT055 for Methanococcus maripaludis JJ

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE

200 most important genes:

  gene name fitness t score description  
MMJJ_RS06510 -5.0 -3.4 LL-diaminopimelate aminotransferase compare
MMJJ_RS01750 -4.1 -3.9 ferrous iron transport protein A compare
MMJJ_RS02045 -4.0 -4.2 molybdenum cofactor guanylyltransferase compare
MMJJ_RS02035 -4.0 -7.8 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS08080 -3.8 -13.2 TIGR00300 family protein compare
MMJJ_RS04200 -3.8 -8.4 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS07720 -3.8 -3.7 UPF0058 family protein compare
MMJJ_RS08625 -3.7 -8.5 magnesium/cobalt transporter CorA compare
MMJJ_RS06625 -3.7 -3.2 pyruvate synthase subunit PorB compare
MMJJ_RS01755 -3.5 -3.3 ferrous iron transport protein B compare
MMJJ_RS06860 -3.4 -6.8 hypothetical protein compare
MMJJ_RS06840 -3.4 -4.6 nickel-dependent hydrogenase large subunit compare
MMJJ_RS06490 -3.3 -3.8 methanogenesis marker 2 protein compare
MMJJ_RS03200 -3.3 -3.8 uroporphyrinogen-III synthase compare
MMJJ_RS07950 -3.3 -4.8 4Fe-4S binding protein compare
MMJJ_RS05155 -3.2 -8.2 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS07670 -3.1 -18.8 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS07665 -3.1 -22.0 formate dehydrogenase subunit alpha compare
MMJJ_RS03840 -3.0 -4.6 DHH family phosphoesterase compare
MMJJ_RS03190 -3.0 -4.0 phosphopyruvate hydratase compare
MMJJ_RS00450 -3.0 -2.4 DUF126 domain-containing protein compare
MMJJ_RS03615 -3.0 -4.0 cobalt-precorrin-8 methylmutase compare
MMJJ_RS06485 -3.0 -4.0 phosphoglycerate kinase compare
MMJJ_RS06910 -3.0 -4.5 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS06695 -3.0 -3.8 amidohydrolase compare
MMJJ_RS01935 -3.0 -5.8 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS08870 -2.9 -2.1 2-isopropylmalate synthase compare
MMJJ_RS00275 -2.9 -3.0 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS06855 -2.8 -2.4 DUF2104 domain-containing protein compare
MMJJ_RS07470 -2.8 -2.9 50S ribosome-binding GTPase compare
MMJJ_RS05415 -2.8 -3.0 hypothetical protein compare
MMJJ_RS07170 -2.8 -6.3 pyridoxal phosphate-dependent aminotransferase compare
MMJJ_RS08055 -2.8 -8.7 methanogenesis marker 14 protein compare
MMJJ_RS08020 -2.8 -8.5 nucleotidyltransferase domain-containing protein compare
MMJJ_RS06180 -2.7 -4.1 tryptophan--tRNA ligase compare
MMJJ_RS01830 -2.7 -5.6 tRNA(Ile)(2)-agmatinylcytidine synthase compare
MMJJ_RS06040 -2.7 -4.9 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS07350 -2.7 -3.7 4Fe-4S binding protein compare
MMJJ_RS03820 -2.7 -3.6 hydrogenase formation protein HypD compare
MMJJ_RS08005 -2.6 -18.7 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS07655 -2.6 -14.6 hypothetical protein compare
MMJJ_RS08335 -2.6 -2.7 ABC transporter ATP-binding protein compare
MMJJ_RS03150 -2.6 -6.2 2-phospho-L-lactate transferase compare
MMJJ_RS03670 -2.6 -5.1 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS05330 -2.6 -2.4 DNA polymerase II large subunit compare
MMJJ_RS04685 -2.6 -10.6 carbamoyltransferase HypF compare
MMJJ_RS06875 -2.5 -3.1 hypothetical protein compare
MMJJ_RS04800 -2.5 -7.3 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS08660 -2.5 -3.9 acetylornithine transaminase compare
MMJJ_RS00050 -2.5 -13.1 AAA family ATPase compare
MMJJ_RS05650 -2.5 -3.8 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS08095 -2.4 -5.0 cobyric acid synthase CobQ compare
MMJJ_RS06225 -2.4 -2.3 adenosylmethionine decarboxylase compare
MMJJ_RS01415 -2.4 -3.3 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS06915 -2.4 -16.7 helix-turn-helix domain-containing protein compare
MMJJ_RS05620 -2.4 -5.0 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS05610 -2.4 -5.2 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS00570 -2.4 -2.6 ribonuclease P compare
MMJJ_RS03895 -2.4 -4.2 hydrogenase expression/formation protein HypE compare
MMJJ_RS07785 -2.4 -3.1 fumarate reductase subunit A compare
MMJJ_RS01345 -2.3 -4.8 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS05490 -2.3 -3.1 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS05950 -2.3 -4.0 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS03065 -2.3 -13.4 CBS domain-containing protein compare
MMJJ_RS01600 -2.3 -3.9 radical SAM protein compare
MMJJ_RS00035 -2.3 -17.4 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS05655 -2.3 -6.7 HisA/HisF family protein compare
MMJJ_RS05445 -2.3 -2.4 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS05535 -2.3 -13.2 hypothetical protein compare
MMJJ_RS03500 -2.3 -13.6 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMJJ_RS03875 -2.2 -4.3 CBS domain-containing protein compare
MMJJ_RS01690 -2.2 -4.0 methanogenesis marker 12 protein compare
MMJJ_RS04970 -2.2 -2.6 DUF655 domain-containing protein compare
MMJJ_RS09175 -2.2 -1.1 anthranilate synthase component I compare
MMJJ_RS00210 -2.2 -2.4 DUF530 family protein compare
MMJJ_RS00040 -2.2 -9.6 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMJJ_RS00045 -2.2 -13.9 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS00355 -2.2 -4.0 ribonuclease P protein component 4 compare
MMJJ_RS06725 -2.2 -12.6 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS03170 -2.2 -7.5 DUF5612 domain-containing protein compare
MMJJ_RS07660 -2.1 -10.7 carbonic anhydrase compare
MMJJ_RS07430 -2.1 -4.5 ribonuclease VapC compare
MMJJ_RS08155 -2.1 -5.2 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS04485 -2.1 -9.5 riboflavin synthase compare
MMJJ_RS06805 -2.1 -3.2 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS00060 -2.1 -15.1 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS06240 -2.1 -2.7 dihydropteroate synthase-like protein compare
MMJJ_RS00065 -2.1 -9.5 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS02200 -2.0 -8.3 chorismate pyruvate-lyase family protein compare
MMJJ_RS06375 -2.0 -4.8 UbiX family flavin prenyltransferase compare
MMJJ_RS06255 -2.0 -6.2 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS03620 -2.0 -5.6 DUF2097 domain-containing protein compare
MMJJ_RS05260 -2.0 -4.7 ATP-grasp domain-containing protein compare
MMJJ_RS00580 -2.0 -2.5 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS00205 -2.0 -6.2 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS07945 -2.0 -2.8 4Fe-4S binding protein compare
MMJJ_RS07705 -2.0 -3.4 GTP-binding protein EngB compare
MMJJ_RS05930 -2.0 -2.0 cell division protein SepF compare
MMJJ_RS00055 -2.0 -10.7 CO dehydrogenase/acetyl-CoA synthase subunit delta compare
MMJJ_RS04655 -2.0 -6.0 FAD-dependent oxidoreductase compare
MMJJ_RS07015 -2.0 -1.8 PFL family protein compare
MMJJ_RS04475 -2.0 -4.7 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS07995 -2.0 -9.1 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS04155 -2.0 -6.6 hypothetical protein compare
MMJJ_RS03815 -2.0 -2.3 nascent polypeptide-associated complex protein compare
MMJJ_RS07640 -2.0 -16.9 cache domain-containing protein compare
MMJJ_RS07635 -1.9 -13.0 response regulator transcription factor compare
MMJJ_RS02920 -1.9 -2.6 30S ribosomal protein S27ae compare
MMJJ_RS02090 -1.9 -5.8 tyramine--L-glutamate ligase compare
MMJJ_RS08855 -1.9 -5.3 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS06865 -1.9 -3.6 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS01880 -1.9 -2.3 RlmE family RNA methyltransferase compare
MMJJ_RS09190 -1.9 -1.7 tryptophan synthase subunit beta compare
MMJJ_RS08320 -1.9 -2.4 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS08850 -1.9 -3.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS00475 -1.9 -2.9 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS08035 -1.9 -7.8 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS07650 -1.9 -14.4 formate/nitrite transporter family protein compare
MMJJ_RS06050 -1.9 -10.7 molybdopterin molybdotransferase MoeA compare
MMJJ_RS01875 -1.9 -4.9 global nitrogen regulator NrpR compare
MMJJ_RS03760 -1.8 -2.2 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS03110 -1.8 -4.3 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS06110 -1.8 -2.0 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS00125 -1.8 -2.5 KEOPS complex subunit Cgi121 compare
MMJJ_RS02040 -1.8 -3.1 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS01870 -1.8 -2.3 methanogenesis marker 15 protein compare
MMJJ_RS08065 -1.8 -3.7 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS05070 -1.8 -2.4 DNA primase catalytic subunit PriS compare
MMJJ_RS06750 -1.8 -1.9 homoaconitase large subunit compare
MMJJ_RS07360 -1.8 -2.2 TIGR00269 family protein compare
MMJJ_RS00075 -1.8 -9.9 AAA family ATPase compare
MMJJ_RS08340 -1.8 -5.9 archaeoflavoprotein AfpA compare
MMJJ_RS02190 -1.8 -13.1 molybdopterin biosynthesis protein compare
MMJJ_RS06010 -1.8 -6.2 hypothetical protein compare
MMJJ_RS00080 -1.8 -11.9 DUF166 domain-containing protein compare
MMJJ_RS05190 -1.8 -7.5 gamma carbonic anhydrase family protein compare
MMJJ_RS00270 -1.8 -2.9 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS07410 -1.8 -3.9 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS06155 -1.8 -5.3 phosphatidylglycerophosphatase A compare
MMJJ_RS07000 -1.7 -2.0 TrkH family potassium uptake protein compare
MMJJ_RS04980 -1.7 -5.3 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS03920 -1.7 -12.3 nickel pincer cofactor biosynthesis protein LarC compare
MMJJ_RS01350 -1.7 -6.7 sodium:proton antiporter compare
MMJJ_RS04150 -1.7 -3.1 DUF5379 domain-containing protein compare
MMJJ_RS07725 -1.7 -5.9 DNA primase DnaG compare
MMJJ_RS03865 -1.7 -1.8 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS05590 -1.7 -1.7 homoserine dehydrogenase compare
MMJJ_RS08250 -1.7 -5.9 hydrogenase maturation peptidase HycI compare
MMJJ_RS03115 -1.7 -6.0 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS02055 -1.7 -11.1 GTP 3',8-cyclase MoaA compare
MMJJ_RS07155 -1.7 -8.7 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS07345 -1.7 -5.9 homocysteine biosynthesis protein compare
MMJJ_RS05595 -1.6 -2.2 hypothetical protein compare
MMJJ_RS00550 -1.6 -6.9 AIR synthase-related protein compare
MMJJ_RS05810 -1.6 -5.2 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS05935 -1.6 -2.0 Era-like GTP-binding protein compare
MMJJ_RS07245 -1.6 -5.1 amidohydrolase family protein compare
MMJJ_RS03125 -1.6 -4.1 GMC oxidoreductase compare
MMJJ_RS03245 -1.6 -1.7 UMP kinase compare
MMJJ_RS08010 -1.6 -6.9 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS00070 -1.6 -4.3 CooT family nickel-binding protein compare
MMJJ_RS03270 -1.6 -2.2 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS08330 -1.6 -3.4 SufD family Fe-S cluster assembly protein compare
MMJJ_RS00345 -1.6 -8.7 4-hydroxy-tetrahydrodipicolinate reductase compare
MMJJ_RS04730 -1.6 -3.0 tyrosine decarboxylase MfnA compare
MMJJ_RS06905 -1.6 -2.1 hypothetical protein compare
MMJJ_RS01200 -1.5 -2.7 PRC-barrel domain-containing protein compare
MMJJ_RS06700 -1.5 -4.7 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS03295 -1.5 -11.4 PHP domain-containing protein compare
MMJJ_RS07190 -1.5 -3.7 RtcB family protein compare
MMJJ_RS04565 -1.5 -2.3 sirohydrochlorin nickelochelatase compare
MMJJ_RS09135 -1.5 -6.4 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS08000 -1.5 -9.0 HesA/MoeB/ThiF family protein compare
MMJJ_RS04985 -1.5 -2.5 glutamyl-tRNA reductase compare
MMJJ_RS01360 -1.5 -2.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS00600 -1.5 -2.4 hydroxymethylbilane synthase compare
MMJJ_RS04700 -1.5 -5.4 deoxyhypusine synthase compare
MMJJ_RS08620 -1.5 -2.6 DUF373 family protein compare
MMJJ_RS05065 -1.4 -4.3 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS06185 -1.4 -3.8 cobalamin biosynthesis protein compare
MMJJ_RS06835 -1.4 -8.2 4Fe-4S binding protein compare
MMJJ_RS08405 -1.4 -9.1 nickel-dependent hydrogenase large subunit compare
MMJJ_RS08480 -1.4 -5.9 hydroxyethylthiazole kinase compare
MMJJ_RS00645 -1.4 -8.6 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS05770 -1.4 -2.3 flagellar protein D compare
MMJJ_RS08840 -1.4 -3.1 calcium/sodium antiporter compare
MMJJ_RS03005 -1.4 -2.5 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS05295 -1.4 -7.4 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS04670 -1.4 -3.1 DUF2117 domain-containing protein compare
MMJJ_RS06760 -1.4 -3.5 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS06015 -1.4 -7.3 Na(+)/H(+) antiporter subunit B compare
MMJJ_RS06030 -1.3 -4.6 4Fe-4S binding protein compare
MMJJ_RS07975 -1.3 -7.5 ATP-dependent sacrificial sulfur transferase LarE compare
MMJJ_RS08170 -1.3 -2.7 diaminopimelate decarboxylase compare
MMJJ_RS04595 -1.3 -5.1 hypothetical protein compare
MMJJ_RS08535 -1.3 -2.7 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS05575 -1.3 -3.6 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS06390 -1.3 -1.4 NADPH-dependent F420 reductase compare
MMJJ_RS03055 -1.3 -2.3 hypothetical protein compare
MMJJ_RS06785 -1.3 -5.4 RNA ligase partner protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms