Experiment set2IT055 for Ralstonia sp. UNC404CL21Col

Compare to:

Beta-alanine carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS01810 -7.0 -4.8 glutamate 5-kinase compare
ABZR87_RS14505 -6.6 -6.4 phosphoribosylanthranilate isomerase compare
ABZR87_RS02160 -6.4 -7.7 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS14500 -6.3 -12.9 tryptophan synthase subunit beta compare
ABZR87_RS02595 -6.3 -14.8 shikimate kinase compare
ABZR87_RS09450 -6.2 -9.5 prephenate dehydratase compare
ABZR87_RS13790 -6.0 -12.2 chorismate synthase compare
ABZR87_RS00190 -6.0 -10.8 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS02155 -6.0 -10.0 anthranilate phosphoribosyltransferase compare
ABZR87_RS16170 -6.0 -7.1 argininosuccinate lyase compare
ABZR87_RS02570 -5.7 -26.3 glutamate synthase-related protein compare
ABZR87_RS02145 -5.7 -3.9 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS14530 -5.7 -8.7 3-isopropylmalate dehydrogenase compare
ABZR87_RS08625 -5.6 -3.9 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS14540 -5.6 -10.6 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS02640 -5.5 -15.5 diaminopimelate decarboxylase compare
ABZR87_RS14535 -5.5 -7.5 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS14490 -5.5 -9.9 tryptophan synthase subunit alpha compare
ABZR87_RS13415 -5.5 -3.8 IclR family transcriptional regulator compare
ABZR87_RS19665 -5.4 -11.0 CoA-acylating methylmalonate-semialdehyde dehydrogenase conserved
ABZR87_RS13175 -5.4 -3.7 tRNA-Leu compare
ABZR87_RS08630 -5.4 -13.1 dihydroorotase compare
ABZR87_RS06770 -5.3 -10.5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS00435 -5.3 -13.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS09465 -5.3 -9.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS00835 -5.2 -3.6 argininosuccinate synthase compare
ABZR87_RS01110 -5.2 -13.5 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS02565 -5.2 -8.0 glutamate synthase subunit beta compare
ABZR87_RS19660 -5.2 -11.0 aspartate aminotransferase family protein conserved
ABZR87_RS07360 -5.1 -16.6 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS05200 -5.1 -20.4 homoserine O-acetyltransferase compare
ABZR87_RS00210 -4.9 -10.0 nitrite/sulfite reductase compare
ABZR87_RS05100 -4.9 -10.7 RNA polymerase-binding protein DksA compare
ABZR87_RS02140 -4.7 -20.0 anthranilate synthase component I compare
ABZR87_RS02590 -4.7 -13.1 3-dehydroquinate synthase compare
ABZR87_RS09935 -4.6 -6.3 amino acid aminotransferase compare
ABZR87_RS14950 -4.6 -4.4 acetolactate synthase small subunit compare
ABZR87_RS04865 -4.5 -6.2 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS11625 -4.5 -10.9 malate synthase A compare
ABZR87_RS00295 -4.5 -6.8 ABC transporter ATP-binding protein compare
ABZR87_RS19655 -4.4 -10.2 PLP-dependent aminotransferase family protein compare
ABZR87_RS12785 -4.3 -9.6 endopeptidase La compare
ABZR87_RS05170 -4.3 -5.1 acetylglutamate kinase compare
ABZR87_RS06315 -4.1 -17.8 bifunctional isocitrate dehydrogenase kinase/phosphatase compare
ABZR87_RS22970 -4.1 -10.8 cystathionine gamma-synthase family protein compare
ABZR87_RS00310 -3.9 -12.7 branched-chain amino acid ABC transporter permease compare
ABZR87_RS00220 -3.9 -10.5 CysB family HTH-type transcriptional regulator compare
ABZR87_RS00315 -3.8 -13.4 branched-chain amino acid ABC transporter substrate-binding protein compare
ABZR87_RS00300 -3.7 -11.2 ABC transporter ATP-binding protein compare
ABZR87_RS00305 -3.7 -15.9 ABC transporter ATP-binding protein compare
ABZR87_RS12790 -3.7 -7.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS00185 -3.7 -5.6 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS12795 -3.5 -8.9 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS14955 -3.4 -5.2 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS00200 -3.3 -5.6 phosphoadenylyl-sulfate reductase compare
ABZR87_RS05590 -3.2 -4.5 orotate phosphoribosyltransferase compare
ABZR87_RS09460 -3.2 -6.5 prephenate dehydrogenase compare
ABZR87_RS13745 -3.1 -16.6 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABZR87_RS00195 -3.1 -3.6 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS06725 -3.1 -22.2 phosphoenolpyruvate--protein phosphotransferase compare
ABZR87_RS01645 -3.0 -7.5 type II 3-dehydroquinate dehydratase compare
ABZR87_RS00875 -3.0 -6.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS16125 -3.0 -9.2 heme biosynthesis protein HemY compare
ABZR87_RS07665 -2.9 -12.4 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS00285 -2.9 -2.8 acetylornithine transaminase compare
ABZR87_RS05350 -2.8 -4.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS02655 -2.8 -10.5 anti-sigma factor compare
ABZR87_RS09515 -2.7 -2.8 cysteine synthase CysM compare
ABZR87_RS16735 -2.7 -19.3 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS15440 -2.6 -3.6 ribonuclease G compare
ABZR87_RS07050 -2.6 -2.7 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS00205 -2.6 -2.5 DUF934 domain-containing protein compare
ABZR87_RS16960 -2.5 -6.1 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS11815 -2.5 -11.6 [protein-PII] uridylyltransferase compare
ABZR87_RS16185 -2.5 -3.1 dCTP deaminase compare
ABZR87_RS04785 -2.5 -11.8 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS04125 -2.4 -7.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS11125 -2.3 -8.5 cell division protein ZapE compare
ABZR87_RS05580 -2.3 -4.9 diaminopimelate epimerase compare
ABZR87_RS16180 -2.2 -3.9 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS06645 -2.2 -3.2 TlpA disulfide reductase family protein compare
ABZR87_RS07635 -2.1 -3.4 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS01615 -2.1 -3.9 RNB domain-containing ribonuclease compare
ABZR87_RS16730 -2.0 -6.9 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS10785 -1.9 -6.4 exodeoxyribonuclease V subunit beta compare
ABZR87_RS11065 -1.9 -7.3 nitrogen regulation protein NR(II) compare
ABZR87_RS10780 -1.9 -4.8 PD-(D/E)XK nuclease family protein compare
ABZR87_RS16075 -1.9 -8.1 trimeric intracellular cation channel family protein compare
ABZR87_RS13475 -1.9 -8.5 PAS domain S-box protein compare
ABZR87_RS07470 -1.8 -9.0 TetR/AcrR family transcriptional regulator compare
ABZR87_RS14115 -1.8 -5.4 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS00215 -1.8 -4.9 sulfite exporter TauE/SafE family protein compare
ABZR87_RS05010 -1.7 -4.4 rod shape-determining protein RodA compare
ABZR87_RS06715 -1.7 -3.0 PTS sugar transporter subunit IIA compare
ABZR87_RS08695 -1.6 -10.4 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS22690 -1.6 -3.4 XRE family transcriptional regulator compare
ABZR87_RS12775 -1.6 -6.4 tRNA-Val compare
ABZR87_RS09565 -1.6 -9.2 Lrp/AsnC ligand binding domain-containing protein conserved
ABZR87_RS04995 -1.6 -3.3 DNA topoisomerase III compare
ABZR87_RS09625 -1.6 -11.5 CobD/CbiB family protein compare
ABZR87_RS08700 -1.6 -8.7 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS16070 -1.6 -3.7 Smr/MutS family protein compare
ABZR87_RS09635 -1.5 -2.1 ribosome small subunit-dependent GTPase A compare
ABZR87_RS11070 -1.5 -8.4 nitrogen regulation protein NR(I) compare
ABZR87_RS02480 -1.5 -2.7 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS01340 -1.4 -6.0 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha conserved
ABZR87_RS20440 -1.4 -1.7 F0F1 ATP synthase subunit epsilon compare
ABZR87_RS06705 -1.4 -10.0 glutamate--cysteine ligase compare
ABZR87_RS01225 -1.3 -3.7 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS10620 -1.3 -2.0 serine O-acetyltransferase compare
ABZR87_RS08640 -1.3 -6.3 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS01350 -1.3 -6.7 NAD(P) transhydrogenase subunit alpha conserved
ABZR87_RS05015 -1.3 -4.9 penicillin-binding protein 2 compare
ABZR87_RS22585 -1.2 -2.5 methyl-accepting chemotaxis protein compare
ABZR87_RS08645 -1.2 -1.4 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS07035 -1.2 -6.5 RNase adapter RapZ compare
ABZR87_RS01980 -1.2 -3.5 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS06845 -1.2 -7.7 heme o synthase compare
ABZR87_RS11590 -1.2 -7.0 isocitrate lyase compare
ABZR87_RS07625 -1.2 -2.4 Holliday junction branch migration protein RuvA compare
ABZR87_RS11940 -1.2 -3.3 SsrA-binding protein SmpB compare
ABZR87_RS16130 -1.2 -3.4 fused uroporphyrinogen-III synthase HemD/membrane protein HemX compare
ABZR87_RS17115 -1.1 -2.6 phytanoyl-CoA dioxygenase family protein compare
ABZR87_RS09615 -1.1 -2.8 50S ribosomal protein L19 compare
ABZR87_RS10240 -1.1 -2.3 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS11245 -1.1 -5.4 translational GTPase TypA compare
ABZR87_RS03705 -1.1 -2.0 DUF2892 domain-containing protein compare
ABZR87_RS07020 -1.1 -8.2 dynamin-like GTPase family protein compare
ABZR87_RS22910 -1.1 -2.3 6-phosphogluconolactonase compare
ABZR87_RS06710 -1.1 -8.8 glutathione synthase compare
ABZR87_RS01355 -1.1 -8.3 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta conserved
ABZR87_RS05025 -1.1 -1.8 rod shape-determining protein MreC compare
ABZR87_RS21795 -1.1 -5.8 NUDIX domain-containing protein compare
ABZR87_RS12800 -1.1 -4.0 trigger factor compare
ABZR87_RS19835 -1.1 -6.8 D-amino acid dehydrogenase compare
ABZR87_RS07620 -1.1 -3.1 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS10400 -1.1 -2.5 hypothetical protein compare
ABZR87_RS01640 -1.0 -4.0 TlpA disulfide reductase family protein compare
ABZR87_RS07705 -1.0 -2.6 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS02385 -1.0 -5.3 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS04945 -1.0 -2.4 DUF4390 domain-containing protein compare
ABZR87_RS11925 -1.0 -7.9 phosphoenolpyruvate synthase compare
ABZR87_RS13705 -1.0 -1.0 integration host factor subunit alpha compare
ABZR87_RS00745 -1.0 -1.6 3-hydroxyacyl-CoA dehydrogenase compare
ABZR87_RS03930 -1.0 -1.6 glycine cleavage system protein GcvH compare
ABZR87_RS17525 -1.0 -7.5 helix-turn-helix domain-containing protein compare
ABZR87_RS13750 -1.0 -2.7 RidA family protein compare
ABZR87_RS14510 -1.0 -3.6 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS06840 -1.0 -5.2 COX15/CtaA family protein compare
ABZR87_RS15405 -1.0 -4.0 YebC/PmpR family DNA-binding transcriptional regulator compare
ABZR87_RS01685 -1.0 -4.1 histone H1-like DNA-binding protein compare
ABZR87_RS02575 -0.9 -3.3 transposase compare
ABZR87_RS13285 -0.9 -6.7 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS01425 -0.9 -2.7 ferric iron uptake transcriptional regulator compare
ABZR87_RS09080 -0.9 -3.6 phage holin family protein compare
ABZR87_RS01430 -0.9 -7.9 LysR family transcriptional regulator compare
ABZR87_RS15250 -0.9 -6.0 PP2C family serine/threonine-protein phosphatase compare
ABZR87_RS11195 -0.9 -4.7 pseudouridine synthase compare
ABZR87_RS01800 -0.9 -3.7 RNA pyrophosphohydrolase compare
ABZR87_RS03015 -0.9 -6.1 DeoR/GlpR family DNA-binding transcription regulator compare
ABZR87_RS16740 -0.9 -5.2 2-methylcitrate synthase compare
ABZR87_RS17310 -0.9 -4.0 PadR family transcriptional regulator compare
ABZR87_RS15065 -0.9 -3.0 TMEM165/GDT1 family protein compare
ABZR87_RS20555 -0.9 -3.7 helix-turn-helix transcriptional regulator compare
ABZR87_RS16885 -0.9 -2.2 hypothetical protein compare
ABZR87_RS09085 -0.9 -5.7 DUF883 family protein compare
ABZR87_RS09560 -0.9 -5.3 D-amino acid dehydrogenase compare
ABZR87_RS04940 -0.9 -5.7 PAS domain-containing sensor histidine kinase compare
ABZR87_RS09895 -0.8 -1.6 DUF1841 family protein compare
ABZR87_RS09955 -0.8 -5.1 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS14330 -0.8 -1.1 hypothetical protein compare
ABZR87_RS13300 -0.8 -4.9 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS02075 -0.8 -1.6 23S ribosomal RNA compare
ABZR87_RS08970 -0.8 -4.7 protein TolQ compare
ABZR87_RS10195 -0.8 -2.8 signal peptidase I compare
ABZR87_RS07675 -0.8 -5.2 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS05060 -0.8 -3.5 DUF484 family protein compare
ABZR87_RS05065 -0.8 -2.3 tyrosine recombinase XerC compare
ABZR87_RS00795 -0.8 -2.4 site-specific tyrosine recombinase XerD compare
ABZR87_RS06820 -0.8 -4.9 cytochrome c oxidase subunit 3 compare
ABZR87_RS13315 -0.8 -6.6 RluA family pseudouridine synthase compare
ABZR87_RS17760 -0.8 -1.3 ATP-binding cassette domain-containing protein compare
ABZR87_RS02380 -0.8 -6.3 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS09445 -0.8 -3.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS10070 -0.8 -2.6 gephyrin-like molybdotransferase Glp compare
ABZR87_RS04860 -0.8 -3.3 phage holin family protein compare
ABZR87_RS11015 -0.7 -3.3 amino-acid N-acetyltransferase compare
ABZR87_RS11675 -0.7 -2.6 disulfide bond formation protein B compare
ABZR87_RS01605 -0.7 -4.6 shikimate dehydrogenase compare
ABZR87_RS15705 -0.7 -1.9 UvrD-helicase domain-containing protein compare
ABZR87_RS04105 -0.7 -3.4 ATP synthase subunit I compare
ABZR87_RS03780 -0.7 -1.6 thiosulfate oxidation carrier protein SoxY compare
ABZR87_RS06795 -0.7 -5.1 cytochrome c oxidase subunit II compare
ABZR87_RS06395 -0.7 -3.2 response regulator compare
ABZR87_RS06800 -0.7 -6.1 cytochrome c oxidase subunit I compare
ABZR87_RS21470 -0.7 -1.8 P-II family nitrogen regulator compare
ABZR87_RS11615 -0.7 -1.0 LysR family transcriptional regulator compare
ABZR87_RS17595 -0.7 -1.6 hypothetical protein compare
ABZR87_RS02680 -0.7 -5.5 c-type cytochrome compare
ABZR87_RS14080 -0.7 -3.5 phosphate signaling complex protein PhoU compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source Beta-alanine in Ralstonia sp. UNC404CL21Col

For carbon source Beta-alanine across organisms