Experiment set2IT055 for Burkholderia phytofirmans PsJN

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
BPHYT_RS23840 -4.2 -3.9 methyltransferase compare
BPHYT_RS08960 -3.9 -2.7 threonine synthase compare
BPHYT_RS16245 -3.6 -8.2 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS01625 -3.5 -4.7 chemotaxis protein CheY compare
BPHYT_RS16710 -3.1 -2.4 LysR family transcriptional regulator compare
BPHYT_RS14865 -3.0 -5.3 UDP-glucose 6-dehydrogenase compare
BPHYT_RS08850 -3.0 -4.3 transcriptional regulator compare
BPHYT_RS14845 -2.9 -3.9 cysteine synthase compare
BPHYT_RS04290 -2.8 -3.3 glycosyl transferase family 2 compare
BPHYT_RS06405 -2.7 -10.2 phosphoribosylamine--glycine ligase compare
BPHYT_RS02610 -2.6 -7.6 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS16175 -2.4 -3.1 hemolysin D compare
BPHYT_RS02860 -2.4 -1.9 membrane protein compare
BPHYT_RS02865 -2.4 -4.0 hypothetical protein compare
BPHYT_RS03640 -2.4 -4.5 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS09515 -2.3 -6.1 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS16255 -2.2 -5.1 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS17095 -2.2 -4.0 proline--tRNA ligase compare
BPHYT_RS02965 -2.0 -3.5 membrane protein compare
BPHYT_RS01620 -2.0 -8.3 sensor histidine kinase compare
BPHYT_RS16270 -2.0 -4.7 phosphoglycerate kinase compare
BPHYT_RS08565 -1.9 -2.5 dihydroorotate dehydrogenase compare
BPHYT_RS14855 -1.9 -3.5 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS15620 -1.9 -6.2 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS02590 -1.8 -9.2 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS16835 -1.8 -6.6 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS03725 -1.8 -2.4 serine hydroxymethyltransferase compare
BPHYT_RS06610 -1.7 -2.5 triosephosphate isomerase compare
BPHYT_RS03480 -1.7 -5.6 ferritin compare
BPHYT_RS23910 -1.7 -2.7 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS33920 -1.7 -7.9 type II citrate synthase compare
BPHYT_RS06685 -1.6 -2.3 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS04370 -1.5 -2.3 glycosyl transferase compare
BPHYT_RS34815 -1.5 -2.4 ABC transporter compare
BPHYT_RS17530 -1.5 -7.3 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS15415 -1.5 -10.2 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS03400 -1.5 -1.7 ATP-dependent DNA helicase RecG compare
BPHYT_RS17520 -1.4 -4.5 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS34810 -1.4 -6.5 RND transporter compare
BPHYT_RS21905 -1.4 -1.5 IclR family transcriptional regulator compare
BPHYT_RS12845 -1.4 -10.4 ATPase compare
BPHYT_RS00770 -1.3 -1.5 conjugal transfer protein TraC compare
BPHYT_RS12840 -1.3 -3.8 pyruvate dehydrogenase compare
BPHYT_RS18255 -1.3 -2.4 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS06530 -1.3 -2.0 membrane protein compare
BPHYT_RS09385 -1.3 -1.3 FAD-dependent oxidoreductase compare
BPHYT_RS33840 -1.3 -7.8 amidophosphoribosyltransferase compare
BPHYT_RS34805 -1.2 -6.3 ABC transporter compare
BPHYT_RS15710 -1.2 -1.6 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS15075 -1.2 -1.8 dihydrokaempferol 4-reductase compare
BPHYT_RS13200 -1.2 -2.5 molybdopterin binding oxidoreductase compare
BPHYT_RS14380 -1.2 -4.9 elongation factor 4 compare
BPHYT_RS12990 -1.2 -3.1 iron transporter compare
BPHYT_RS13605 -1.1 -1.0 tRNA-Pro compare
BPHYT_RS16340 -1.1 -6.3 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS19680 -1.1 -8.4 glutamate--cysteine ligase compare
BPHYT_RS14245 -1.1 -1.5 membrane protein compare
BPHYT_RS23270 -1.1 -1.5 enoyl-CoA hydratase compare
BPHYT_RS27030 -1.0 -1.8 transcriptional regulator compare
BPHYT_RS12465 -1.0 -2.0 inositol monophosphatase compare
BPHYT_RS04385 -1.0 -1.9 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS14390 -1.0 -4.4 peptidase compare
BPHYT_RS09585 -1.0 -2.0 hypothetical protein compare
BPHYT_RS15290 -1.0 -1.7 tRNA-Arg compare
BPHYT_RS28575 -1.0 -1.0 transcriptional regulator compare
BPHYT_RS30795 -1.0 -1.4 short-chain dehydrogenase compare
BPHYT_RS14505 -1.0 -1.9 membrane protein compare
BPHYT_RS13645 -1.0 -8.2 threonine--tRNA ligase compare
BPHYT_RS09330 -1.0 -7.0 phytoene synthase compare
BPHYT_RS15615 -1.0 -3.2 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS06190 -1.0 -2.2 heptosyltransferase compare
BPHYT_RS35885 -1.0 -1.9 hypothetical protein compare
BPHYT_RS33580 -1.0 -3.5 geranyltranstransferase compare
BPHYT_RS36275 -1.0 -1.3 hypothetical protein compare
BPHYT_RS27370 -1.0 -1.8 CoA transferase compare
BPHYT_RS32525 -1.0 -1.3 hypothetical protein compare
BPHYT_RS08765 -0.9 -1.0 ABC transporter ATP-binding protein compare
BPHYT_RS06375 -0.9 -2.9 ribonuclease compare
BPHYT_RS36220 -0.9 -1.1 hypothetical protein compare
BPHYT_RS21460 -0.9 -1.9 UDP-N-acetylglucosamine 2-epimerase compare
BPHYT_RS29920 -0.9 -1.1 hypothetical protein compare
BPHYT_RS04335 -0.9 -1.7 membrane protein compare
BPHYT_RS21340 -0.9 -3.2 2OG-Fe(II) oxygenase compare
BPHYT_RS21335 -0.9 -1.9 CDP-alcohol phosphatidyltransferase compare
BPHYT_RS06075 -0.9 -4.1 hypothetical protein compare
BPHYT_RS16345 -0.9 -4.1 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS26470 -0.9 -1.5 MFS transporter compare
BPHYT_RS22715 -0.9 -3.0 L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) (from data) compare
BPHYT_RS02005 -0.9 -1.7 diguanylate phosphodiesterase compare
BPHYT_RS06990 -0.9 -1.5 membrane protein compare
BPHYT_RS09315 -0.9 -0.9 chemotaxis protein CheY compare
BPHYT_RS08955 -0.9 -2.7 homoserine dehydrogenase compare
BPHYT_RS26560 -0.9 -1.3 murein hydrolase transporter LrgA compare
BPHYT_RS04965 -0.9 -3.5 ATP-binding protein compare
BPHYT_RS10765 -0.9 -3.1 amidase compare
BPHYT_RS12725 -0.9 -6.0 regulator compare
BPHYT_RS05650 -0.8 -1.2 hypothetical protein compare
BPHYT_RS30415 -0.8 -1.6 AraC family transcriptional regulator compare
BPHYT_RS12925 -0.8 -1.0 exodeoxyribonuclease III compare
BPHYT_RS08235 -0.8 -0.9 nucleoprotein, Hfg, host factor I compare
BPHYT_RS06555 -0.8 -4.3 ketol-acid reductoisomerase compare
BPHYT_RS16675 -0.8 -1.9 dihydroorotase compare
BPHYT_RS18340 -0.8 -1.4 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS16210 -0.8 -2.3 peptidase compare
BPHYT_RS02130 -0.8 -2.4 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS16215 -0.8 -2.4 sensor histidine kinase compare
BPHYT_RS16840 -0.8 -1.7 transketolase compare
BPHYT_RS27295 -0.8 -1.3 hypothetical protein compare
BPHYT_RS19435 -0.8 -2.7 16S rRNA methyltransferase compare
BPHYT_RS17905 -0.8 -1.6 fimbrial assembly family protein compare
BPHYT_RS11170 -0.8 -1.0 hypothetical protein compare
BPHYT_RS34780 -0.8 -2.8 phytoene synthase compare
BPHYT_RS11755 -0.8 -1.9 spermidine/putrescine ABC transporter substrate-binding protein compare
BPHYT_RS02285 -0.8 -3.5 cell division protein compare
BPHYT_RS20155 -0.8 -1.3 hypothetical protein compare
BPHYT_RS10650 -0.8 -1.2 membrane protein compare
BPHYT_RS34085 -0.8 -2.2 polyamine ABC transporter permease compare
BPHYT_RS08945 -0.8 -5.9 hypothetical protein compare
BPHYT_RS21495 -0.8 -0.9 ABC transporter compare
BPHYT_RS07705 -0.8 -1.7 arginine succinyltransferase compare
BPHYT_RS29750 -0.8 -2.6 phosphoenolpyruvate phosphomutase compare
BPHYT_RS08125 -0.8 -5.3 ATPase compare
BPHYT_RS05420 -0.8 -2.2 glutathione S-transferase compare
BPHYT_RS26330 -0.8 -3.4 hypothetical protein compare
BPHYT_RS21350 -0.8 -2.1 ADP-glucose pyrophosphorylase compare
BPHYT_RS31050 -0.7 -0.8 epimerase compare
BPHYT_RS28065 -0.7 -1.4 hypothetical protein compare
BPHYT_RS00690 -0.7 -0.9 transcriptional regulator compare
BPHYT_RS30490 -0.7 -0.7 2-haloalkanoic acid dehalogenase compare
BPHYT_RS16880 -0.7 -0.8 malic enzyme compare
BPHYT_RS22360 -0.7 -1.7 response regulator receiver compare
BPHYT_RS13130 -0.7 -1.4 metallophosphatase compare
BPHYT_RS18270 -0.7 -5.0 phenylacetic acid degradation protein compare
BPHYT_RS02135 -0.7 -1.4 glyoxylate reductase compare
BPHYT_RS33615 -0.7 -2.2 decarboxylase compare
BPHYT_RS14370 -0.7 -1.6 ribonuclease III compare
BPHYT_RS19570 -0.7 -5.6 sodium/hydrogen exchanger compare
BPHYT_RS28705 -0.7 -1.2 IclR family transcriptional regulator compare
BPHYT_RS29745 -0.7 -2.7 phosphonopyruvate decarboxylase compare
BPHYT_RS18250 -0.7 -3.6 phenylacetate-CoA oxygenase subunit PaaA compare
BPHYT_RS28625 -0.7 -1.9 major facilitator transporter compare
BPHYT_RS25005 -0.7 -1.0 FMN reductase compare
BPHYT_RS04885 -0.7 -1.3 threonine-phosphate decarboxylase compare
BPHYT_RS18635 -0.7 -2.0 LamB/YcsF family protein compare
BPHYT_RS28245 -0.7 -1.4 MFS transporter compare
BPHYT_RS21025 -0.7 -0.9 cation-binding protein compare
BPHYT_RS09500 -0.7 -2.4 glucose-6-phosphate isomerase compare
BPHYT_RS36240 -0.7 -1.4 hypothetical protein compare
BPHYT_RS22580 -0.7 -1.6 transcriptional regulator compare
BPHYT_RS06900 -0.7 -2.7 aspartate aminotransferase compare
BPHYT_RS10760 -0.7 -1.7 major facilitator transporter compare
BPHYT_RS04340 -0.7 -2.5 hypothetical protein compare
BPHYT_RS21990 -0.7 -2.4 FAD-dependent oxidoreductase compare
BPHYT_RS23760 -0.7 -2.0 phosphonate ABC transporter permease compare
BPHYT_RS13250 -0.7 -1.5 hypothetical protein compare
BPHYT_RS29520 -0.7 -0.7 hypothetical protein compare
BPHYT_RS15950 -0.7 -4.2 tyrosine recombinase XerD compare
BPHYT_RS14400 -0.7 -1.6 anti-sigma factor compare
BPHYT_RS24500 -0.7 -1.1 histidine kinase compare
BPHYT_RS22540 -0.7 -1.5 metal ABC transporter permease compare
BPHYT_RS19565 -0.7 -4.1 gamma-glutamyl:cysteine ligase compare
BPHYT_RS25645 -0.7 -1.6 dehydrogenase compare
BPHYT_RS33150 -0.7 -0.7 beta-lactamase compare
BPHYT_RS23210 -0.7 -0.9 MFS transporter compare
BPHYT_RS00885 -0.7 -1.6 chemotaxis protein CheY compare
BPHYT_RS35005 -0.7 -2.5 molecular chaperone DnaJ compare
BPHYT_RS16665 -0.7 -1.8 peroxiredoxin compare
BPHYT_RS07415 -0.7 -1.6 hypothetical protein compare
BPHYT_RS33645 -0.7 -3.1 homoserine kinase compare
BPHYT_RS10845 -0.7 -1.7 UbiD family decarboxylase compare
BPHYT_RS11290 -0.6 -2.2 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) (from data) compare
BPHYT_RS17035 -0.6 -1.7 sugar kinase compare
BPHYT_RS22355 -0.6 -1.1 HAD family hydrolase compare
BPHYT_RS23770 -0.6 -1.5 GntR family transcriptional regulator compare
BPHYT_RS07350 -0.6 -1.9 ABC transporter ATP-binding protein compare
BPHYT_RS00225 -0.6 -1.5 hypothetical protein compare
BPHYT_RS14140 -0.6 -2.8 phosphate transporter permease subunit PstC compare
BPHYT_RS34545 -0.6 -1.4 transcriptional regulator compare
BPHYT_RS09160 -0.6 -3.9 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS20060 -0.6 -1.0 hypothetical protein compare
BPHYT_RS05290 -0.6 -1.0 hypothetical protein compare
BPHYT_RS10345 -0.6 -0.8 flagellar motor protein MotB compare
BPHYT_RS04610 -0.6 -2.2 type VI secretion protein ImpA compare
BPHYT_RS18260 -0.6 -3.8 phenylacetic acid degradation protein compare
BPHYT_RS06175 -0.6 -1.6 LPS biosynthesis compare
BPHYT_RS01095 -0.6 -0.8 hypothetical protein compare
BPHYT_RS11540 -0.6 -1.5 ureidoglycolate hydrolase compare
BPHYT_RS06410 -0.6 -1.8 transcriptional regulator compare
BPHYT_RS30040 -0.6 -0.9 hypothetical protein compare
BPHYT_RS17885 -0.6 -2.4 3-dehydroquinate synthase compare
BPHYT_RS31150 -0.6 -1.5 transcriptional regulator compare
BPHYT_RS32675 -0.6 -1.3 2-methylcitrate dehydratase compare
BPHYT_RS11100 -0.6 -1.4 methyltransferase compare
BPHYT_RS07580 -0.6 -1.8 N-formimino-L-glutamate deiminase compare
BPHYT_RS09645 -0.6 -1.6 ankyrin compare
BPHYT_RS09480 -0.6 -1.0 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS15275 -0.6 -2.2 hypothetical protein compare
BPHYT_RS30845 -0.6 -1.7 polyketide cyclase compare
BPHYT_RS07720 -0.6 -2.8 Succinylglutamate desuccinylase (EC 3.5.1.96) (from data) compare
BPHYT_RS27390 -0.6 -1.4 hydroxyacid dehydrogenase compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in lb experiments