Experiment set2IT054 for Sinorhizobium meliloti 1021

Compare to:

LB with Fusidic acid sodium salt 0.0001 mg/ml

200 most important genes:

  gene name fitness t score description  
SMc02142 -8.4 -5.8 phosphate transporter ATP-binding protein compare
SMc02641 -7.1 -4.9 UDP-glucose 6-dehydrogenase compare
SMc01220 -6.9 -4.8 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc02909 -6.2 -3.7 transglycosylase transmembrane protein compare
SMc01845 -6.2 -3.0 transglycosylase transmembrane protein compare
SMc00070 -6.0 -3.6 signal peptide protein compare
SMc02434 -5.7 -4.7 hypothetical protein compare
SMc01347 -5.5 -5.3 hypothetical protein compare
SMc01850 -5.4 -5.2 hypothetical protein compare
SMc02833 -5.2 -3.0 penicillin-insensitive murein endopeptidase compare
SMc02147 -5.1 -8.9 phosphate regulon sensor histidine kinase transmembrane protein compare
SMc02868 -4.9 -8.5 multidrug efflux system protein compare
SMc02140 -4.7 -1.9 phosphate regulon transcriptional regulatory protein compare
SMc01881 -4.7 -5.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc01880 -4.6 -4.5 pantoate--beta-alanine ligase compare
SM_b20563 -4.4 -4.2 hypothetical protein compare
SMc01221 -4.4 -16.9 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc02640 -4.4 -6.3 UDP-glucuronic acid epimerase compare
SMc01342 -4.4 -7.8 hypothetical protein compare
SMc00067 -4.4 -14.7 outer-membranne lipoprotein compare
SMc00619 -4.3 -3.3 hypothetical protein compare
SMc02435 -4.2 -4.7 methyltransferase compare
SMc01208 -4.1 -4.2 peptidyl-prolyl cis-trans isomerase B protein compare
SMc02520 -4.1 -11.2 glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) (from data) compare
SMc02850 -4.0 -4.3 DNA polymerase I compare
SMc02365 -3.9 -8.0 protease precursor protein compare
SMc02366 -3.9 -15.6 transcriptional regulator compare
SMc03967 -3.8 -2.7 Holliday junction resolvase compare
SMc02144 -3.8 -8.4 phosphate ABC transporter permease compare
SMc02867 -3.8 -5.8 multidrug-efflux system transmembrane protein compare
SMc02714 -3.8 -1.9 hypothetical protein compare
SMc02246 -3.7 -1.6 hypothetical protein compare
SMc00689 -3.7 -5.6 lipoprotein compare
SMc02367 -3.6 -13.9 sensor histidine kinase transmembrane protein compare
SMa0789 -3.5 -6.6 GntR family transcriptional regulator compare
SMc00334 -3.5 -3.0 cytidylate kinase compare
SMc00511 -3.4 -8.7 D-ribulose-5-phosphate 3-epimerase compare
SMc02543 -3.4 -5.5 hypothetical protein compare
SMc00580 -3.4 -5.7 4-hydroxythreonine-4-phosphate dehydrogenase compare
SMc04085 -3.4 -8.1 hypothetical protein compare
SMc03996 -3.3 -7.1 thiamine-phosphate pyrophosphorylase compare
SMc02102 -3.3 -7.8 hypothetical protein compare
SMc04209 -3.3 -9.1 hypothetical protein compare
SMc03773 -3.2 -8.2 hypothetical protein compare
SMc03978 -3.2 -5.2 transketolase compare
SMc03229 -3.1 -2.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc02753 -3.1 -2.0 PTS system transporter subunit IIA compare
SMc02234 -3.0 -2.8 hypothetical protein compare
SMc01929 -3.0 -3.8 hypothetical protein compare
SMc00073 -3.0 -3.4 hypothetical protein compare
SMc04024 -3.0 -5.8 membrane-bound lytic murein transglycosylase compare
SMc00522 -3.0 -8.4 ATP-dependent RNA helicase compare
SMc02232 -3.0 -4.3 hypothetical protein compare
SMc03070 -3.0 -9.7 glucose-6-phosphate 1-dehydrogenase compare
SMc03878 -2.9 -3.5 acetoacetyl-CoA reductase compare
SMc03774 -2.9 -3.6 hypothetical protein compare
SMc00914 -2.9 -7.6 oxidoreductase compare
SMc03863 -2.7 -4.5 50S ribosomal protein L19 compare
SMc01147 -2.6 -3.0 coproporphyrinogen III oxidase compare
SMc02071 -2.6 -5.1 hydrolase glycosidase compare
SMc02115 -2.6 -1.3 hypothetical protein compare
SMc02484 -2.6 -8.1 amino acid efflux transmembrane protein compare
SMc01438 -2.6 -6.5 protease precursor signal peptide protein compare
SMc02143 -2.5 -3.8 phosphate ABC transporter permease compare
SM_b20942 -2.5 -4.6 UDP glucose 4-epimerase compare
SMc02050 -2.4 -5.1 trigger factor compare
SMc02713 -2.3 -2.7 RNA polymerase sigma-E factor (sigma-24) protein compare
SMc00353 -2.3 -3.2 transmembrane protein compare
SMc02407 -2.3 -8.3 hypothetical protein compare
SMc01364 -2.3 -1.6 DNA topoisomerase I compare
SMc02385 -2.2 -3.4 hypothetical protein compare
SMc00088 -2.2 -2.1 hypothetical protein compare
SMc02582 -2.2 -4.5 hypothetical protein compare
SMc02145 -2.1 -1.0 signal peptide protein compare
SMc00566 -2.1 -2.6 hypothetical protein compare
SMc04169 -2.1 -10.8 transcriptional regulator compare
SMc03763 -2.1 -4.0 cytosine-specific methyltransferase compare
SMc02114 -2.1 -3.8 hypothetical protein compare
SM_b20021 -2.1 -1.5 transcriptional regulator compare
SMc00255 -2.0 -9.9 hypothetical protein compare
SMc04043 -2.0 -9.4 hypothetical protein compare
SMc00579 -2.0 -8.2 dimethyladenosine transferase compare
SMc01144 -1.9 -3.6 ribonuclease PH compare
SMc02827 -1.9 -3.4 hypothetical protein compare
SMc01595 -1.9 -2.7 sensor histidine kinase transmembrane protein compare
SMc00194 -1.9 -5.6 hypothetical protein compare
SMc03973 -1.8 -10.4 hypothetical protein compare
SMc02495 -1.8 -1.9 translaldolase compare
SMc01222 -1.8 -8.0 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc00565 -1.7 -1.9 50S ribosomal protein L9 compare
SMa1118 -1.7 -2.2 HspC2 heat shock protein compare
SMc03100 -1.7 -2.6 hypothetical protein compare
SMc02856 -1.7 -8.8 penicillin-binding protein compare
SMc02978 -1.6 -4.5 hypothetical protein compare
SMa1052 -1.6 -1.9 hypothetical protein compare
SMc03242 -1.6 -2.8 GTP-binding protein compare
SMc00296 -1.6 -10.0 POLY3-hydroxybutyrate polymerase compare
SM_b20676 -1.6 -7.0 hypothetical protein compare
SMc02544 -1.6 -1.2 hypothetical protein compare
SMc00760 -1.5 -5.4 recombinase A compare
SMc00537 -1.5 -8.4 transporter conserved
SMc02112 -1.5 -5.5 hypothetical protein compare
SMc00928 -1.5 -1.3 signal peptide protein compare
SM_b20803 -1.4 -3.3 3-deoxy-manno-octulosonate cytidylyltransferase compare
SMc03850 -1.4 -1.5 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SM_b20880 -1.4 -6.9 ATP-dependent RNA helicase compare
SMc03050 -1.4 -2.9 flagellar biosynthesis regulatory protein FlaF compare
SM_b20452 -1.4 -3.5 hypothetical protein compare
SMc00061 -1.4 -4.4 hypothetical protein compare
SMc00320 -1.4 -3.0 ribosome-binding factor A compare
SMc01457 -1.4 -7.1 transport transmembrane protein conserved
SMa0754 -1.4 -1.5 hypothetical protein compare
SM_b20450 -1.4 -10.5 regulatory protein compare
SMc00622 -1.4 -4.9 ribonuclease D protein compare
SMc01700 -1.4 -4.3 peptidyl-prolyl cis-trans isomerase A compare
SMc01258 -1.3 -5.0 hypothetical protein compare
SM_b21418 -1.3 -8.9 NDP-hexose 3-C-methyltransferase compare
SMc02077 -1.3 -3.0 exodeoxyribonuclease III protein compare
SM_b21523 -1.3 -3.0 cell division inhibitor protein compare
SMc01458 -1.3 -7.1 transporter compare
SMc02894 -1.3 -2.4 hypothetical protein compare
SMc03923 -1.3 -8.5 glucose-1-phosphate adenylyltransferase compare
SMc00288 -1.3 -6.4 signal peptide protein compare
SM_b20758 -1.3 -1.7 ArsR family transcriptional regulator compare
SM_b20086 -1.3 -1.6 hypothetical protein compare
SMc00025 -1.3 -6.1 pyruvate phosphate dikinase compare
SMa1924 -1.3 -1.0 hypothetical protein compare
SMc00981 -1.3 -6.2 ferredoxin protein compare
SMc02149 -1.3 -1.4 hypothetical protein compare
SMc03123 -1.3 -10.0 transcriptional regulator compare
SMc01365 -1.3 -9.1 exoribonuclease II protein compare
SMc00556 -1.2 -5.3 DNA repair protein RadA compare
SMc00602 -1.2 -4.4 excinuclease ABC subunit C compare
SM_b21501 -1.2 -3.1 hypothetical protein compare
SMc00331 -1.2 -2.1 hypothetical protein compare
SMc04296 -1.2 -1.1 cell division protein FtsZ compare
SM_b20998 -1.2 -5.1 hypothetical protein compare
SMc00060 -1.2 -5.4 hypothetical protein compare
SMc04340 -1.2 -7.9 oxidoreductase compare
SM_b21524 -1.2 -1.9 septum formation inhibitor compare
SM_b21182 -1.2 -6.1 hypothetical protein compare
SMc01939 -1.2 -1.1 urease subunit beta compare
SMc02363 -1.2 -2.3 cytochrome C-type biogenesis transmembrane protein compare
SMc02785 -1.2 -5.2 lytic murein transglycosylase A protein compare
SMc01472 -1.2 -0.7 50S ribosomal protein L11 methyltransferase compare
SMc01428 -1.2 -1.9 cold shock transcription regulator protein compare
SMc04121 -1.2 -2.1 uracil phosphoribosyltransferase compare
SMc02451 -1.2 -1.8 hypothetical protein compare
SMc00513 -1.2 -4.4 amino acid-binding periplasmic protein compare
SMc02786 -1.1 -5.4 translocase transmembrane protein compare
SMc02308 -1.1 -4.5 hypothetical protein compare
SM_b21426 -1.1 -7.5 sugar nucleotide oxidoreductaseepimerase compare
SMc01461 -1.1 -3.9 DNA helicase II protein compare
SMc00492 -1.1 -0.9 hypothetical protein compare
SMc04454 -1.1 -4.8 ABC transporter ATP-binding protein compare
SMa0144 -1.1 -1.0 hypothetical protein compare
SMc03180 -1.1 -4.5 monovalent cation/H+ antiporter subunit C compare
SM_b21425 -1.1 -6.5 hypothetical protein compare
SMc00856 -1.1 -1.2 hypothetical protein compare
SM_b21416 -1.1 -5.6 glucose-1-phosphate cytidylyltransferase compare
SMc01146 -1.1 -2.3 deoxyribonucleotide triphosphate pyrophosphatase compare
SMc00241 -1.1 -2.0 transcriptional regulator compare
SMc03182 -1.1 -3.2 pH adaptation potassium efflux system E transmembrane protein compare
SMc03068 -1.1 -6.4 phosphogluconate dehydratase compare
SMc01361 -1.1 -4.4 dihydroorotase compare
SMc02510 -1.1 -0.8 ferric uptake regulation protein compare
SMc00725 -1.1 -3.5 argininosuccinate lyase compare
SMc02270 -1.1 -8.5 capsular polysaccharide biosynthesis\export transmembrane protein compare
SMc00970 -1.1 -1.3 exodeoxyribonuclease VII small subunit compare
SMc03181 -1.1 -5.6 monovalent cation/H+ antiporter subunit D compare
SMa0674 -1.1 -1.2 hypothetical protein compare
SMc03179 -1.0 -7.6 monovalent cation/H+ antiporter subunit A compare
SMc00815 -1.0 -0.6 inosine 5'-monophosphate dehydrogenase compare
SM_b20258 -1.0 -3.5 transcriptional regulator compare
SMc01454 -1.0 -6.7 hypothetical protein compare
SMc00355 -1.0 -2.9 hypothetical protein compare
SMc02271 -1.0 -3.8 ribitol type dehydrogenase compare
SMc00982 -1.0 -5.4 dioxygenase compare
SMc03993 -1.0 -3.4 hypothetical protein compare
SM_b21428 -1.0 -4.9 dTDP-4-dehydrorhamnose 3,5-epimerase compare
SMa1570 -1.0 -1.5 PilA2 pilus assembly protein compare
SMc02307 -1.0 -4.0 histidinol dehydrogenase compare
SMc02505 -1.0 -1.6 hypothetical protein compare
SMc00169 -1.0 -6.5 malic enzyme compare
SMc00820 -1.0 -4.9 transcriptional regulator compare
SM_b21417 -1.0 -5.7 CDP-glucose 4,6-dehydratase compare
SMc01877 -0.9 -3.1 DNA repair protein compare
SMc00576 -0.9 -3.7 hypothetical protein compare
SMa2053 -0.9 -1.5 MocE-like protein compare
SMc01235 -0.9 -6.5 excinuclease ABC subunit A compare
SMc04339 -0.9 -5.6 hypothetical protein compare
SM_b20889 -0.9 -2.5 hypothetical protein compare
SMc02758 -0.9 -2.0 nucleotidyl transferase compare
SMc00228 -0.9 -5.7 ATP-dependent DNA helicase RecG compare
SMc01716 -0.9 -5.5 sensor histidine kinase transmembrane protein compare
SMc01709 -0.9 -2.3 signal peptide protein compare
SMc02849 -0.9 -4.8 2-hydroxyacid dehydrogenase compare
SMc04220 -0.9 -1.1 transcriptional regulator compare
SMc00147 -0.9 -1.9 hypothetical protein compare
SMc03924 -0.9 -4.9 glycogen synthase compare


Specific Phenotypes

For 18 genes in this experiment

For stress Fusidic acid sodium salt in Sinorhizobium meliloti 1021

For stress Fusidic acid sodium salt across organisms