Experiment set2IT054 for Ralstonia sp. UNC404CL21Col

Compare to:

Trans-2-methyl-2-butenoic acid carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS02160 -7.6 -5.3 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS01810 -7.0 -4.8 glutamate 5-kinase compare
ABZR87_RS14500 -6.9 -11.6 tryptophan synthase subunit beta compare
ABZR87_RS07360 -6.8 -14.5 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS16170 -6.7 -6.5 argininosuccinate lyase compare
ABZR87_RS02565 -6.7 -4.6 glutamate synthase subunit beta compare
ABZR87_RS02155 -6.7 -9.1 anthranilate phosphoribosyltransferase compare
ABZR87_RS14535 -6.6 -4.6 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS02570 -6.6 -20.0 glutamate synthase-related protein compare
ABZR87_RS16730 -6.5 -8.9 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS06305 -6.3 -4.3 acetyl-CoA C-acetyltransferase compare
ABZR87_RS14530 -6.2 -6.0 3-isopropylmalate dehydrogenase compare
ABZR87_RS16740 -6.0 -10.8 2-methylcitrate synthase compare
ABZR87_RS16660 -6.0 -9.1 helix-turn-helix domain-containing protein compare
ABZR87_RS05200 -5.9 -21.0 homoserine O-acetyltransferase compare
ABZR87_RS09465 -5.9 -8.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS16735 -5.8 -20.2 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS13790 -5.8 -13.6 chorismate synthase compare
ABZR87_RS14540 -5.7 -10.3 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS02595 -5.7 -12.2 shikimate kinase compare
ABZR87_RS09445 -5.7 -15.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS02640 -5.6 -16.7 diaminopimelate decarboxylase compare
ABZR87_RS06770 -5.5 -10.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS01110 -5.5 -12.5 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS14950 -5.5 -3.8 acetolactate synthase small subunit compare
ABZR87_RS14505 -5.4 -7.2 phosphoribosylanthranilate isomerase compare
ABZR87_RS14490 -5.3 -11.4 tryptophan synthase subunit alpha compare
ABZR87_RS00745 -5.3 -3.7 3-hydroxyacyl-CoA dehydrogenase compare
ABZR87_RS00190 -5.3 -13.3 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS00835 -5.3 -3.6 argininosuccinate synthase compare
ABZR87_RS00210 -5.1 -10.3 nitrite/sulfite reductase compare
ABZR87_RS08625 -4.9 -4.8 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS07380 -4.9 -18.8 FAD/FMN-binding oxidoreductase compare
ABZR87_RS02590 -4.9 -12.8 3-dehydroquinate synthase compare
ABZR87_RS00185 -4.7 -4.6 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS22970 -4.6 -11.6 cystathionine gamma-synthase family protein compare
ABZR87_RS08695 -4.6 -19.6 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS16140 -4.6 -18.7 phosphoenolpyruvate carboxylase compare
ABZR87_RS05590 -4.5 -5.4 orotate phosphoribosyltransferase compare
ABZR87_RS09935 -4.5 -6.9 amino acid aminotransferase compare
ABZR87_RS07060 -4.5 -16.6 RNA polymerase factor sigma-54 compare
ABZR87_RS13250 -4.4 -4.8 phosphoserine phosphatase SerB compare
ABZR87_RS00435 -4.4 -14.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS08630 -4.4 -12.5 dihydroorotase compare
ABZR87_RS07665 -4.3 -13.8 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS02140 -4.3 -20.3 anthranilate synthase component I compare
ABZR87_RS11440 -4.3 -7.2 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS11925 -4.2 -17.0 phosphoenolpyruvate synthase compare
ABZR87_RS04865 -4.1 -6.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS00200 -4.1 -6.8 phosphoadenylyl-sulfate reductase compare
ABZR87_RS06315 -3.9 -15.6 bifunctional isocitrate dehydrogenase kinase/phosphatase compare
ABZR87_RS09450 -3.9 -7.4 prephenate dehydratase compare
ABZR87_RS05170 -3.8 -5.8 acetylglutamate kinase compare
ABZR87_RS07050 -3.6 -3.4 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS12790 -3.6 -7.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS00285 -3.5 -2.4 acetylornithine transaminase compare
ABZR87_RS05100 -3.5 -7.9 RNA polymerase-binding protein DksA compare
ABZR87_RS14115 -3.4 -8.5 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS00205 -3.4 -4.4 DUF934 domain-containing protein compare
ABZR87_RS14955 -3.4 -5.2 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS08700 -3.4 -13.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS16750 -3.4 -12.4 propionate catabolism operon regulatory protein PrpR compare
ABZR87_RS13475 -3.4 -12.0 PAS domain S-box protein compare
ABZR87_RS02145 -3.4 -3.9 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS00195 -3.4 -3.3 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS16745 -3.3 -9.3 methylisocitrate lyase compare
ABZR87_RS06705 -3.1 -15.7 glutamate--cysteine ligase compare
ABZR87_RS15440 -3.1 -3.7 ribonuclease G compare
ABZR87_RS13300 -3.1 -13.5 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS17455 -3.1 -8.5 AraC family transcriptional regulator compare
ABZR87_RS00220 -3.0 -9.4 CysB family HTH-type transcriptional regulator compare
ABZR87_RS11125 -3.0 -8.2 cell division protein ZapE compare
ABZR87_RS06710 -2.9 -16.3 glutathione synthase compare
ABZR87_RS16180 -2.9 -3.4 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS10400 -2.7 -4.4 hypothetical protein compare
ABZR87_RS17460 -2.7 -5.4 acyl-CoA dehydrogenase compare
ABZR87_RS06320 -2.6 -10.2 isovaleryl-CoA dehydrogenase compare
ABZR87_RS17465 -2.6 -9.4 AMP-binding protein compare
ABZR87_RS07470 -2.5 -10.6 TetR/AcrR family transcriptional regulator compare
ABZR87_RS12795 -2.5 -5.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS00875 -2.5 -7.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS16960 -2.5 -6.7 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS14380 -2.4 -6.5 glutamate racemase compare
ABZR87_RS07675 -2.4 -11.7 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS07035 -2.4 -10.7 RNase adapter RapZ compare
ABZR87_RS06645 -2.3 -2.8 TlpA disulfide reductase family protein compare
ABZR87_RS01615 -2.3 -4.0 RNB domain-containing ribonuclease compare
ABZR87_RS04940 -2.3 -10.4 PAS domain-containing sensor histidine kinase compare
ABZR87_RS10240 -2.2 -3.6 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS10785 -2.2 -7.1 exodeoxyribonuclease V subunit beta compare
ABZR87_RS00215 -2.2 -5.5 sulfite exporter TauE/SafE family protein compare
ABZR87_RS10550 -2.1 -2.6 outer membrane protein assembly factor BamC compare
ABZR87_RS13175 -2.1 -2.7 tRNA-Leu compare
ABZR87_RS14375 -2.1 -3.8 fumarate hydratase compare
ABZR87_RS11435 -2.1 -4.7 Mth938-like domain-containing protein compare
ABZR87_RS04785 -1.9 -10.1 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS10610 -1.9 -2.5 inositol monophosphatase family protein compare
ABZR87_RS13290 -1.9 -6.9 3-ketoacyl-ACP reductase compare
ABZR87_RS01605 -1.8 -9.3 shikimate dehydrogenase compare
ABZR87_RS01425 -1.8 -4.2 ferric iron uptake transcriptional regulator compare
ABZR87_RS00355 -1.8 -10.1 quinolinate synthase NadA compare
ABZR87_RS13415 -1.7 -8.0 IclR family transcriptional regulator compare
ABZR87_RS09635 -1.7 -2.7 ribosome small subunit-dependent GTPase A compare
ABZR87_RS15505 -1.7 -2.0 DNA polymerase III subunit alpha compare
ABZR87_RS09515 -1.7 -1.8 cysteine synthase CysM compare
ABZR87_RS17475 -1.7 -7.6 3-hydroxyisobutyrate dehydrogenase compare
ABZR87_RS12785 -1.7 -6.7 endopeptidase La compare
ABZR87_RS06715 -1.6 -4.0 PTS sugar transporter subunit IIA compare
ABZR87_RS11195 -1.6 -7.4 pseudouridine synthase compare
ABZR87_RS16125 -1.5 -7.9 heme biosynthesis protein HemY compare
ABZR87_RS13350 -1.5 -5.2 potassium transporter Kup compare
ABZR87_RS04945 -1.5 -3.8 DUF4390 domain-containing protein compare
ABZR87_RS13285 -1.5 -10.4 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS10170 -1.5 -7.5 RseA family anti-sigma factor compare
ABZR87_RS00350 -1.4 -5.9 carboxylating nicotinate-nucleotide diphosphorylase compare
ABZR87_RS02480 -1.4 -2.8 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS07705 -1.4 -3.3 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS14415 -1.4 -1.6 hemin uptake protein HemP compare
ABZR87_RS16270 -1.4 -2.9 cold-shock protein compare
ABZR87_RS11815 -1.4 -5.5 [protein-PII] uridylyltransferase compare
ABZR87_RS01645 -1.3 -4.6 type II 3-dehydroquinate dehydratase compare
ABZR87_RS14330 -1.3 -1.5 hypothetical protein compare
ABZR87_RS07730 -1.3 -2.9 lysophospholipid acyltransferase family protein compare
ABZR87_RS06495 -1.3 -2.2 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS10980 -1.3 -2.6 tRNA-Leu compare
ABZR87_RS09895 -1.3 -2.2 DUF1841 family protein compare
ABZR87_RS06395 -1.3 -6.3 response regulator compare
ABZR87_RS00325 -1.3 -2.4 peptidylprolyl isomerase compare
ABZR87_RS02180 -1.3 -10.0 M61 family metallopeptidase compare
ABZR87_RS11000 -1.2 -6.9 transaldolase compare
ABZR87_RS07635 -1.2 -2.5 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS01980 -1.2 -2.5 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS17470 -1.2 -3.7 CoA-acylating methylmalonate-semialdehyde dehydrogenase compare
ABZR87_RS09460 -1.2 -4.8 prephenate dehydrogenase compare
ABZR87_RS14080 -1.2 -4.7 phosphate signaling complex protein PhoU compare
ABZR87_RS07620 -1.1 -2.8 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS10175 -1.1 -6.1 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS02575 -1.1 -3.7 transposase compare
ABZR87_RS03075 -1.0 -7.1 AGE family epimerase/isomerase compare
ABZR87_RS10780 -1.0 -3.4 PD-(D/E)XK nuclease family protein compare
ABZR87_RS08645 -1.0 -1.2 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS21795 -1.0 -3.5 NUDIX domain-containing protein compare
ABZR87_RS14495 -1.0 -5.3 site-specific DNA-methyltransferase compare
ABZR87_RS00345 -1.0 -8.4 L-aspartate oxidase compare
ABZR87_RS16080 -1.0 -1.7 P-II family nitrogen regulator compare
ABZR87_RS06310 -1.0 -3.2 carbonate dehydratase compare
ABZR87_RS04125 -1.0 -4.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS16165 -1.0 -1.1 anti-sigma factor compare
ABZR87_RS10690 -1.0 -6.5 ABC transporter permease compare
ABZR87_RS21815 -0.9 -1.0 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS07700 -0.9 -2.1 peptidylprolyl isomerase compare
ABZR87_RS14090 -0.9 -4.4 phosphate ABC transporter permease PstA compare
ABZR87_RS15810 -0.9 -4.2 hypothetical protein compare
ABZR87_RS10620 -0.9 -1.3 serine O-acetyltransferase compare
ABZR87_RS22300 -0.9 -1.2 flagellar biosynthesis anti-sigma factor FlgM compare
ABZR87_RS11050 -0.9 -2.3 rhodanese-like domain-containing protein compare
ABZR87_RS10680 -0.9 -6.2 extracellular solute-binding protein compare
ABZR87_RS00795 -0.9 -2.5 site-specific tyrosine recombinase XerD compare
ABZR87_RS11015 -0.9 -3.8 amino-acid N-acetyltransferase compare
ABZR87_RS09625 -0.9 -6.4 CobD/CbiB family protein compare
ABZR87_RS18000 -0.9 -2.4 protein phosphatase CheZ compare
ABZR87_RS14085 -0.9 -5.0 phosphate ABC transporter ATP-binding protein PstB compare
ABZR87_RS11245 -0.8 -3.5 translational GTPase TypA compare
ABZR87_RS07020 -0.8 -6.3 dynamin-like GTPase family protein compare
ABZR87_RS15240 -0.8 -2.2 YicC/YloC family endoribonuclease compare
ABZR87_RS09525 -0.8 -7.0 histone deacetylase family protein compare
ABZR87_RS22485 -0.8 -3.4 FAD-dependent oxidoreductase compare
ABZR87_RS09955 -0.8 -4.0 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS21940 -0.8 -0.9 hypothetical protein compare
ABZR87_RS06745 -0.8 -4.0 S41 family peptidase compare
ABZR87_RS16185 -0.8 -1.6 dCTP deaminase compare
ABZR87_RS10085 -0.8 -1.4 Rne/Rng family ribonuclease compare
ABZR87_RS12780 -0.8 -1.2 HU family DNA-binding protein compare
ABZR87_RS20500 -0.7 -1.1 hypothetical protein compare
ABZR87_RS05010 -0.7 -2.4 rod shape-determining protein RodA compare
ABZR87_RS05350 -0.7 -2.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS09615 -0.7 -1.4 50S ribosomal protein L19 compare
ABZR87_RS22690 -0.7 -1.7 XRE family transcriptional regulator compare
ABZR87_RS17270 -0.7 -1.5 hypothetical protein compare
ABZR87_RS09700 -0.7 -2.6 DEAD/DEAH box helicase compare
ABZR87_RS14510 -0.7 -3.6 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS00685 -0.7 -2.2 hypothetical protein compare
ABZR87_RS10685 -0.7 -5.1 microcin C ABC transporter permease YejB compare
ABZR87_RS05060 -0.7 -3.2 DUF484 family protein compare
ABZR87_RS16250 -0.7 -2.7 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS19340 -0.7 -2.0 LysR family transcriptional regulator compare
ABZR87_RS04860 -0.7 -2.6 phage holin family protein compare
ABZR87_RS23095 -0.7 -0.9 MarR family transcriptional regulator compare
ABZR87_RS07500 -0.7 -4.3 acyl-CoA thioesterase compare
ABZR87_RS12625 -0.7 -5.4 3-(methylthio)propionyl-CoA ligase compare
ABZR87_RS02385 -0.7 -3.1 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS05205 -0.7 -3.4 methionine biosynthesis protein MetW compare
ABZR87_RS15805 -0.7 -4.4 IclR family transcriptional regulator compare
ABZR87_RS07625 -0.7 -1.6 Holliday junction branch migration protein RuvA compare
ABZR87_RS09500 -0.7 -2.5 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
ABZR87_RS01690 -0.7 -0.9 collagen-like triple helix repeat-containing protein compare
ABZR87_RS00580 -0.6 -2.0 hypothetical protein compare
ABZR87_RS16130 -0.6 -2.5 fused uroporphyrinogen-III synthase HemD/membrane protein HemX compare
ABZR87_RS13010 -0.6 -0.9 GPW/gp25 family protein compare
ABZR87_RS19470 -0.6 -5.1 UDP-glucose 4-epimerase GalE compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Trans-2-methyl-2-butenoic acid in Ralstonia sp. UNC404CL21Col

For carbon source Trans-2-methyl-2-butenoic acid across organisms