Experiment set2IT054 for Paraburkholderia graminis OAS925

Compare to:

D-Alanine carbon source

200 most important genes:

  gene name fitness t score description  
ABIE53_000830 -6.0 -3.8 preprotein translocase subunit YajC compare
ABIE53_003158 -6.0 -3.8 phosphoserine aminotransferase compare
ABIE53_000423 -5.5 -3.8 DnaK suppressor protein compare
ABIE53_005863 -5.4 -6.4 cyclic di-GMP phosphodiesterase Gmr compare
ABIE53_003132 -4.9 -6.7 Lrp/AsnC family leucine-responsive transcriptional regulator conserved
ABIE53_000838 -4.4 -6.7 starvation-inducible DNA-binding protein compare
ABIE53_002485 -4.3 -5.9 pyruvate,water dikinase compare
ABIE53_004801 -4.3 -5.1 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit compare
ABIE53_003133 -4.3 -7.8 D-amino-acid dehydrogenase conserved
ABIE53_000667 -4.3 -6.6 glycerol-3-phosphate dehydrogenase (NAD(P)+) compare
ABIE53_000053 -4.3 -7.7 uncharacterized protein YbaP (TraB family) compare
ABIE53_004811 -4.3 -5.1 tryptophan synthase alpha chain compare
ABIE53_000663 -4.2 -9.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE53_002004 -4.2 -6.4 anti-sigma factor RsiW compare
ABIE53_004803 -4.2 -4.1 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit compare
ABIE53_001572 -4.2 -5.0 hypothetical protein compare
ABIE53_005547 -4.2 -1.9 putative porin compare
ABIE53_000061 -4.1 -2.9 methylenetetrahydrofolate reductase (NADPH) compare
ABIE53_003157 -4.1 -5.7 chorismate mutase/prephenate dehydratase compare
ABIE53_000414 -4.1 -12.9 homoserine O-acetyltransferase compare
ABIE53_004804 -4.1 -4.9 3-isopropylmalate dehydrogenase compare
ABIE53_005099 -4.1 -7.8 cell division protein FtsI/penicillin-binding protein 2 compare
ABIE53_003638 -4.0 -2.8 ribulose-phosphate 3-epimerase compare
ABIE53_001588 -4.0 -3.9 triosephosphate isomerase compare
ABIE53_001314 -4.0 -6.7 phosphoenolpyruvate carboxylase compare
ABIE53_002857 -4.0 -12.8 phosphomethylpyrimidine synthase compare
ABIE53_004817 -4.0 -8.1 O-succinylhomoserine sulfhydrylase compare
ABIE53_003746 -4.0 -16.2 penicillin-binding protein 1A compare
ABIE53_003017 -3.9 -9.9 trehalose 6-phosphate phosphatase compare
ABIE53_002306 -3.9 -2.7 hypothetical protein compare
ABIE53_005782 -3.9 -1.8 hypothetical protein compare
ABIE53_003306 -3.8 -5.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE53_001226 -3.8 -4.5 sulfite reductase (NADPH) hemoprotein beta-component compare
ABIE53_001227 -3.7 -2.6 uncharacterized protein (DUF934 family) compare
ABIE53_003752 -3.7 -1.7 cytochrome c-type biogenesis protein CcsB compare
ABIE53_003536 -3.7 -5.0 glyceraldehyde 3-phosphate dehydrogenase compare
ABIE53_003531 -3.6 -2.5 Fur family ferric uptake transcriptional regulator compare
ABIE53_002762 -3.6 -3.5 enolase compare
ABIE53_003231 -3.6 -2.5 DNA-directed RNA polymerase subunit omega compare
ABIE53_003735 -3.5 -3.4 hypothetical protein compare
ABIE53_000403 -3.5 -3.4 rod shape-determining protein MreD compare
ABIE53_001232 -3.5 -2.4 sirohydrochlorin cobaltochelatase compare
ABIE53_003305 -3.5 -7.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE53_001229 -3.5 -6.7 sulfate adenylyltransferase subunit 2 compare
ABIE53_000718 -3.5 -12.7 RNA polymerase sigma-54 factor compare
ABIE53_002117 -3.5 -4.8 ATP-dependent Lon protease compare
ABIE53_003749 -3.5 -4.8 diaminopimelate decarboxylase compare
ABIE53_003734 -3.5 -8.7 glutamate synthase (NADPH/NADH) large chain compare
ABIE53_000768 -3.5 -8.4 FAD/FMN-containing dehydrogenase/Fe-S oxidoreductase compare
ABIE53_003588 -3.4 -3.4 glutamate 5-kinase compare
ABIE53_000885 -3.3 -6.6 biopolymer transport protein TolQ compare
ABIE53_000650 -3.2 -9.8 thiol-disulfide isomerase/thioredoxin compare
ABIE53_000840 -3.2 -4.9 pyrroline-5-carboxylate reductase compare
ABIE53_000883 -3.2 -2.0 colicin import membrane protein compare
ABIE53_003434 -3.2 -7.9 heptosyltransferase-2 compare
ABIE53_002077 -3.1 -2.2 phosphoserine phosphatase compare
ABIE53_003494 -3.1 -3.0 Holliday junction DNA helicase RuvA compare
ABIE53_001230 -3.1 -9.5 sulfate adenylyltransferase subunit 1 compare
ABIE53_003428 -3.1 -3.7 phosphoglycerate kinase compare
ABIE53_000402 -3.0 -4.2 penicillin-binding protein 2 compare
ABIE53_005223 -3.0 -2.5 4-hydroxy-2-oxoheptanedioate aldolase compare
ABIE53_002116 -3.0 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABIE53_004227 -3.0 -5.4 signal transduction histidine kinase compare
ABIE53_003640 -3.0 -6.3 anthranilate synthase component 1 compare
ABIE53_004630 -2.9 -1.3 hypothetical protein compare
ABIE53_002794 -2.8 -2.8 PAS domain S-box-containing protein compare
ABIE53_002528 -2.8 -2.0 LPLT family lysophospholipid transporter-like MFS transporter compare
ABIE53_001228 -2.8 -4.7 phosphoadenosine phosphosulfate reductase compare
ABIE53_004866 -2.8 -16.2 RNA polymerase primary sigma factor compare
ABIE53_003815 -2.8 -2.7 tRNA-Arg compare
ABIE53_002424 -2.8 -8.0 anti-sigma factor RsiW compare
ABIE53_003495 -2.7 -1.9 Holliday junction DNA helicase RuvB compare
ABIE53_003586 -2.7 -8.2 putative (di)nucleoside polyphosphate hydrolase compare
ABIE53_003444 -2.7 -3.7 succinyl-CoA synthetase alpha subunit compare
ABIE53_003159 -2.7 -6.0 phosphoserine aminotransferase compare
ABIE53_002739 -2.7 -4.1 outer membrane protein assembly factor BamB compare
ABIE53_001644 -2.7 -4.1 aromatic-amino-acid transaminase compare
ABIE53_000649 -2.7 -3.6 peroxiredoxin compare
ABIE53_000063 -2.6 -3.6 adenosylhomocysteinase compare
ABIE53_001571 -2.6 -7.0 putative Fe-S protein YdhL (DUF1289 family) compare
ABIE53_000776 -2.6 -2.7 putative FmdB family regulatory protein compare
ABIE53_002804 -2.6 -5.2 two-component system nitrogen regulation response regulator GlnG compare
ABIE53_000884 -2.6 -4.3 biopolymer transport protein TolR compare
ABIE53_000666 -2.5 -3.8 preprotein translocase subunit SecB compare
ABIE53_005596 -2.5 -8.9 DNA-binding IclR family transcriptional regulator compare
ABIE53_000626 -2.5 -14.4 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) compare
ABIE53_001544 -2.5 -2.9 coproporphyrinogen III oxidase compare
ABIE53_000674 -2.5 -7.1 cytochrome c oxidase subunit 1 compare
ABIE53_003733 -2.5 -3.3 glutamate synthase domain-containing protein 3 compare
ABIE53_003445 -2.5 -3.7 succinyl-CoA synthetase beta subunit compare
ABIE53_002693 -2.5 -2.4 DNA-binding MarR family transcriptional regulator compare
ABIE53_003565 -2.5 -3.7 thiol-disulfide isomerase/thioredoxin compare
ABIE53_004263 -2.4 -2.3 nicotinate dehydrogenase subunit A compare
ABIE53_000683 -2.3 -8.5 protoheme IX farnesyltransferase compare
ABIE53_005000 -2.3 -1.8 hypothetical protein compare
ABIE53_000046 -2.3 -7.8 putative MarR family transcription regulator compare
ABIE53_002805 -2.3 -6.5 two-component system nitrogen regulation sensor histidine kinase GlnL compare
ABIE53_003674 -2.3 -5.3 AcrR family transcriptional regulator compare
ABIE53_004143 -2.3 -3.6 DNA-binding NarL/FixJ family response regulator compare
ABIE53_000383 -2.2 -2.0 DNA invertase Pin-like site-specific DNA recombinase compare
ABIE53_000262 -2.2 -2.1 chromosome partitioning protein compare
ABIE53_003610 -2.2 -2.4 cell division protein FtsQ compare
ABIE53_001420 -2.2 -3.7 cytochrome c553 compare
ABIE53_004858 -2.2 -4.2 farnesyl diphosphate synthase compare
ABIE53_002507 -2.1 -4.2 [protein-PII] uridylyltransferase compare
ABIE53_001994 -2.1 -7.1 LysR family cys regulon transcriptional activator compare
ABIE53_003664 -2.1 -5.1 release factor glutamine methyltransferase compare
ABIE53_003541 -2.0 -7.9 RNAse (barnase) inhibitor barstar compare
ABIE53_002101 -2.0 -6.7 two-component system phosphate regulon response regulator OmpR compare
ABIE53_000682 -2.0 -8.0 cytochrome c oxidase assembly protein subunit 15 compare
ABIE53_005807 -2.0 -2.7 hypothetical protein compare
ABIE53_002168 -2.0 -5.5 hypothetical protein compare
ABIE53_000282 -2.0 -7.6 two-component system OmpR family response regulator compare
ABIE53_000118 -2.0 -1.9 two-component system chemotaxis response regulator CheY compare
ABIE53_004619 -2.0 -1.9 mannose-6-phosphate isomerase-like protein (cupin superfamily) compare
ABIE53_000223 -2.0 -2.9 hypothetical protein compare
ABIE53_000465 -1.9 -9.7 cation diffusion facilitator family transporter compare
ABIE53_002396 -1.9 -6.2 muramoyltetrapeptide carboxypeptidase compare
ABIE53_003669 -1.9 -2.3 CspA family cold shock protein compare
ABIE53_001225 -1.9 -5.6 LysR family cys regulon transcriptional activator compare
ABIE53_004548 -1.9 -1.7 4-oxalocrotonate tautomerase compare
ABIE53_005566 -1.9 -4.5 FMN reductase compare
ABIE53_003162 -1.9 -2.5 OOP family OmpA-OmpF porin compare
ABIE53_002055 -1.8 -6.4 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABIE53_002726 -1.8 -5.8 hypothetical protein compare
ABIE53_002138 -1.8 -5.5 glucose-6-phosphate isomerase compare
ABIE53_002352 -1.8 -7.9 AcrR family transcriptional regulator compare
ABIE53_003737 -1.8 -9.8 outer membrane protein compare
ABIE53_000875 -1.7 -4.9 tRNA dimethylallyltransferase compare
ABIE53_005236 -1.7 -1.4 DNA-binding MarR family transcriptional regulator compare
ABIE53_003877 -1.7 -8.0 DeoR/GlpR family transcriptional regulator of sugar metabolism compare
ABIE53_005243 -1.7 -1.1 hypothetical protein compare
ABIE53_006147 -1.7 -1.6 TetR/AcrR family transcriptional repressor of bet genes compare
ABIE53_002487 -1.6 -3.5 regulator of PEP synthase PpsR (kinase-PPPase family) compare
ABIE53_003426 -1.6 -2.5 fructose-bisphosphate aldolase class II compare
ABIE53_002743 -1.6 -4.3 cytoskeleton protein RodZ compare
ABIE53_000858 -1.6 -7.6 heat-inducible transcriptional repressor compare
ABIE53_001575 -1.6 -1.8 acetolactate synthase-1/3 small subunit compare
ABIE53_000850 -1.6 -5.8 3-deoxy-7-phosphoheptulonate synthase compare
ABIE53_000678 -1.6 -4.6 cytochrome c oxidase subunit 3 compare
ABIE53_006381 -1.6 -2.0 hypothetical protein compare
ABIE53_006008 -1.6 -1.6 two-component system chemotaxis response regulator CheY compare
ABIE53_002880 -1.6 -5.9 XRE family aerobic/anaerobic benzoate catabolism transcriptional regulator compare
ABIE53_005841 -1.5 -1.7 2-furoyl-CoA dehydrogenase FAD binding subunit compare
ABIE53_002698 -1.5 -4.3 TetR/AcrR family transcriptional repressor of nem operon compare
ABIE53_003164 -1.5 -3.5 2-phosphoglycolate phosphatase compare
ABIE53_006560 -1.5 -3.2 ABC-type sugar transport system substrate-binding protein compare
ABIE53_004141 -1.5 -5.4 hypothetical protein conserved
ABIE53_002862 -1.5 -6.3 outer membrane protein assembly factor BamC compare
ABIE53_004140 -1.5 -6.6 SSS family solute:Na+ symporter conserved
ABIE53_003754 -1.5 -6.1 cbb3-type cytochrome c oxidase subunit III compare
ABIE53_002788 -1.5 -5.5 IclR family KDG regulon transcriptional repressor compare
ABIE53_000681 -1.5 -9.0 cytochrome oxidase Cu insertion factor (SCO1/SenC/PrrC family) compare
ABIE53_000795 -1.5 -4.8 MurNAc alpha-1-phosphate uridylyltransferase compare
ABIE53_005390 -1.5 -2.0 hypothetical protein compare
ABIE53_006183 -1.5 -1.7 cobalt-precorrin 5A hydrolase compare
ABIE53_001772 -1.4 -1.1 succinylglutamic semialdehyde dehydrogenase compare
ABIE53_003361 -1.4 -4.9 integrase/recombinase XerD compare
ABIE53_000040 -1.4 -2.0 hypothetical protein compare
ABIE53_001757 -1.4 -1.8 ribulose-5-phosphate 4-epimerase/fuculose-1-phosphate aldolase compare
ABIE53_003684 -1.4 -10.6 ubiquinol-cytochrome c reductase cytochrome b subunit compare
ABIE53_001846 -1.4 -2.7 TetR/AcrR family transcriptional repressor of nem operon compare
ABIE53_005383 -1.4 -2.4 methyl-accepting chemotaxis protein compare
ABIE53_003186 -1.4 -5.5 disulfide bond formation protein DsbB compare
ABIE53_002242 -1.4 -2.2 hypothetical protein compare
ABIE53_003160 -1.4 -6.4 hypothetical protein compare
ABIE53_004325 -1.4 -2.1 hypothetical protein compare
ABIE53_003040 -1.4 -6.2 serine protease Do compare
ABIE53_004197 -1.4 -1.6 nucleotide-binding universal stress UspA family protein compare
ABIE53_001769 -1.4 -1.2 succinylornithine aminotransferase compare
ABIE53_001992 -1.4 -5.5 sulfate transport system permease protein compare
ABIE53_005281 -1.4 -2.0 cytochrome c oxidase subunit 2 compare
ABIE53_000567 -1.4 -1.4 Lrp/AsnC family leucine-responsive transcriptional regulator compare
ABIE53_003059 -1.3 -3.5 ribonuclease E compare
ABIE53_002102 -1.3 -6.6 hypothetical protein compare
ABIE53_000833 -1.3 -3.4 ATP-dependent DNA helicase RecG compare
ABIE53_001770 -1.3 -3.2 arginine N-succinyltransferase compare
ABIE53_003943 -1.3 -1.7 RNA polymerase sigma-70 factor (ECF subfamily) compare
ABIE53_003044 -1.3 -2.1 hypothetical protein compare
ABIE53_003459 -1.3 -5.3 cytochrome c553 compare
ABIE53_000870 -1.3 -4.1 poly(A) polymerase compare
ABIE53_004232 -1.3 -2.1 osmotically inducible protein OsmC compare
ABIE53_006137 -1.2 -1.8 membrane dipeptidase compare
ABIE53_005792 -1.2 -1.8 putative lipoprotein YmbA compare
ABIE53_004373 -1.2 -2.0 ribose transport system substrate-binding protein compare
ABIE53_002879 -1.2 -1.8 benzoyl-CoA-dihydrodiol lyase compare
ABIE53_000680 -1.2 -5.4 surfeit locus 1 family protein compare
ABIE53_001488 -1.2 -3.0 site-specific recombinase XerD compare
ABIE53_004558 -1.2 -1.8 4-hydroxybenzoyl-CoA thioesterase compare
ABIE53_001879 -1.2 -2.1 lysine/arginine/ornithine transport system substrate-binding protein compare
ABIE53_003683 -1.2 -7.6 ubiquinol-cytochrome c reductase cytochrome c1 subunit compare
ABIE53_000673 -1.2 -5.6 cytochrome c oxidase subunit 2 compare
ABIE53_002583 -1.2 -2.3 DNA-binding transcriptional LysR family regulator compare
ABIE53_005100 -1.2 -3.5 hypothetical protein compare
ABIE53_005295 -1.1 -1.4 putative FmdB family regulatory protein compare
ABIE53_001760 -1.1 -1.1 DNA-binding transcriptional LysR family regulator compare
ABIE53_002844 -1.1 -2.6 bacterioferritin compare
ABIE53_004802 -1.1 -3.0 entericidin A compare
ABIE53_005377 -1.1 -1.3 AcrR family transcriptional regulator compare
ABIE53_005752 -1.1 -2.8 DNA-binding PadR family transcriptional regulator compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source D-Alanine in Paraburkholderia graminis OAS925

For carbon source D-Alanine across organisms