Experiment set2IT053 for Pseudomonas fluorescens FW300-N2C3

Compare to:

LB with Thallium(I) acetate 0.008 mg/ml

Group: stress
Media: LB + Thallium(I) acetate (0.008 mg/ml)
Culturing: pseudo5_N2-C3_1_ML2, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Jayashree on 4/28/2014
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 894 E1,E2

Specific Phenotypes

For 7 genes in this experiment

For stress Thallium(I) acetate in Pseudomonas fluorescens FW300-N2C3

For stress Thallium(I) acetate across organisms

SEED Subsystems

Subsystem #Specific
Biogenesis of cytochrome c oxidases 1
Cobalt-zinc-cadmium resistance 1
Methionine Biosynthesis 1
Rrf2 family transcriptional regulators 1
Threonine and Homoserine Biosynthesis 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
L-homoserine biosynthesis 3 3 1
NADPH to cytochrome c oxidase via plastocyanin (thylakoid membrane) 4 1 1
photosynthesis light reactions 4 1 1
superpathway of L-threonine biosynthesis 6 6 1
superpathway of photosynthetic hydrogen production 6 2 1
superpathway of L-homoserine and L-methionine biosynthesis 8 6 1
superpathway of L-methionine biosynthesis (transsulfuration) 9 7 1
superpathway of S-adenosyl-L-methionine biosynthesis 9 7 1
superpathway of L-methionine biosynthesis (by sulfhydrylation) 12 12 1
superpathway of L-isoleucine biosynthesis I 13 13 1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis II 15 13 1
oxygenic photosynthesis 17 12 1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis I 18 16 1
aspartate superpathway 25 22 1
ethene biosynthesis V (engineered) 25 19 1
photosynthetic 3-hydroxybutanoate biosynthesis (engineered) 26 20 1
1-butanol autotrophic biosynthesis (engineered) 27 20 1