Experiment set2IT053 for Herbaspirillum seropedicae SmR1

Compare to:

Glycerol carbon source

200 most important genes:

  gene name fitness t score description  
HSERO_RS18430 -8.0 -5.5 chorismate mutase compare
HSERO_RS15555 -7.5 -5.8 oxidoreductase compare
HSERO_RS15550 -6.9 -4.4 sulfite reductase compare
HSERO_RS08655 -6.8 -3.4 acetolactate synthase compare
HSERO_RS20315 -6.7 -5.7 imidazole glycerol phosphate synthase compare
HSERO_RS17810 -6.5 -1.9 glycosyl transferase compare
HSERO_RS20350 -6.4 -5.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
HSERO_RS19445 -6.3 -9.4 anthranilate phosphoribosyltransferase compare
HSERO_RS02260 -6.2 -5.2 DNA polymerase I compare
HSERO_RS16515 -6.2 -11.8 isopropylmalate isomerase compare
HSERO_RS15565 -6.1 -5.0 sulfate adenylyltransferase subunit 2 compare
HSERO_RS20310 -6.1 -3.7 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (from data) compare
HSERO_RS02330 -6.0 -8.4 aspartate carbamoyltransferase compare
HSERO_RS15575 -5.8 -1.7 uroporphyrin-III C-methyltransferase compare
HSERO_RS20330 -5.6 -8.1 imidazoleglycerol-phosphate dehydratase compare
HSERO_RS16505 -5.4 -6.1 3-isopropylmalate dehydratase small subunit compare
HSERO_RS17185 -5.4 -13.1 2-isopropylmalate synthase compare
HSERO_RS08405 -5.4 -2.2 membrane protein compare
HSERO_RS02145 -5.3 -1.6 ferritin compare
HSERO_RS08650 -5.3 -9.2 acetolactate synthase compare
HSERO_RS16480 -5.1 -4.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
HSERO_RS16475 -5.0 -2.1 tryptophan synthase subunit alpha compare
HSERO_RS15560 -5.0 -4.9 phosphoadenosine phosphosulfate reductase compare
HSERO_RS20325 -4.9 -4.9 IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) compare
HSERO_RS19630 -4.9 -1.4 AMP nucleosidase compare
HSERO_RS20320 -4.8 -5.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
HSERO_RS01815 -4.7 -8.9 gamma-glutamyl kinase compare
HSERO_RS23945 -4.6 -4.8 cobyric acid synthase CobQ compare
HSERO_RS19510 -4.6 -11.1 threonine dehydratase compare
HSERO_RS20345 -4.5 -5.8 histidinol dehydrogenase compare
HSERO_RS00455 -4.5 -10.7 homoserine O-acetyltransferase compare
HSERO_RS07160 -4.4 -5.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
HSERO_RS17155 -4.4 -3.2 RNA helicase compare
HSERO_RS20920 -4.4 -5.7 3-dehydroquinate synthase compare
HSERO_RS07970 -4.3 -2.5 formyltetrahydrofolate deformylase compare
HSERO_RS14670 -4.3 -17.5 phosphoenolpyruvate carboxylase compare
HSERO_RS19450 -4.3 -4.6 indole-3-glycerol-phosphate synthase compare
HSERO_RS19595 -4.3 -14.2 glutamate synthase compare
HSERO_RS16500 -4.3 -7.0 3-isopropylmalate dehydrogenase compare
HSERO_RS17815 -4.1 -3.4 glycosyl transferase compare
HSERO_RS16440 -4.1 -3.2 O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) (from data) compare
HSERO_RS18990 -4.0 -5.2 pyrroline-5-carboxylate reductase compare
HSERO_RS15585 -3.9 -8.5 cobalamin biosynthesis protein CbiX compare
HSERO_RS19590 -3.8 -1.6 dihydropyrimidine dehydrogenase subunit A compare
HSERO_RS02325 -3.8 -5.6 uracil phosphoribosyltransferase compare
HSERO_RS19435 -3.8 -4.5 anthranilate synthase subunit I compare
HSERO_RS02090 -3.7 -1.5 Holliday junction DNA helicase RuvA compare
HSERO_RS02650 -3.7 -6.6 dihydroxy-acid dehydratase compare
HSERO_RS04875 -3.6 -7.6 glycerol kinase conserved
HSERO_RS16885 -3.5 -2.0 magnesium-transporting ATPase compare
HSERO_RS03540 -3.5 -1.4 dimethyladenosine transferase compare
HSERO_RS01935 -3.4 -6.5 3-dehydroquinate dehydratase compare
HSERO_RS17105 -3.4 -2.9 DNA polymerase III subunit epsilon compare
HSERO_RS10455 -3.2 -7.0 aminotransferase compare
HSERO_RS08660 -3.2 -3.7 ketol-acid reductoisomerase compare
HSERO_RS04325 -3.2 -5.3 helicase I compare
HSERO_RS04855 -3.2 -4.1 ABC transporter permease compare
HSERO_RS16470 -3.2 -1.7 tryptophan synthase subunit alpha compare
HSERO_RS17980 -3.2 -2.8 GTP-binding protein compare
HSERO_RS20355 -3.2 -4.2 UDP-N-acetylglucosamine 1-carboxyvinyltransferase compare
HSERO_RS04330 -3.1 -6.4 ATP-dependent exonuclease compare
HSERO_RS15570 -3.0 -5.6 sulfate adenylyltransferase compare
HSERO_RS13315 -3.0 -1.5 ferredoxin compare
HSERO_RS14185 -2.9 -1.9 FeS cluster assembly scaffold IscU compare
HSERO_RS11065 -2.9 -3.3 quinolinate synthetase compare
HSERO_RS10460 -2.9 -1.6 homoserine dehydrogenase compare
HSERO_RS17110 -2.8 -4.4 ribonuclease H compare
HSERO_RS21475 -2.8 -2.3 recombinase XerC compare
HSERO_RS10805 -2.8 -3.1 succinyldiaminopimelate aminotransferase compare
HSERO_RS03550 -2.6 -3.1 glyoxalase I compare
HSERO_RS04845 -2.5 -4.8 ABC transporter compare
HSERO_RS06245 -2.5 -9.5 catalase-peroxidase compare
HSERO_RS15630 -2.5 -1.4 exodeoxyribonuclease III compare
HSERO_RS15835 -2.5 -2.4 aspartate aminotransferase compare
HSERO_RS04850 -2.4 -2.7 ABC transporter ATP-binding protein compare
HSERO_RS10405 -2.4 -2.6 phosphate starvation protein PhoH compare
HSERO_RS02160 -2.4 -1.4 DNA-dependent helicase compare
HSERO_RS03350 -2.3 -4.4 hypothetical protein compare
HSERO_RS21345 -2.3 -4.3 cell division inhibitor MinD compare
HSERO_RS09050 -2.3 -4.4 2-aminoadipate aminotransferase compare
HSERO_RS05515 -2.3 -1.3 glucose-6-phosphate isomerase compare
HSERO_RS10340 -2.2 -3.7 flagellar biosynthesis protein FliS compare
HSERO_RS04870 -2.2 -4.6 glycerol ABC transporter, substrate-binding component (from data) conserved
HSERO_RS11070 -2.2 -4.9 nicotinate-nucleotide pyrophosphorylase compare
HSERO_RS02215 -2.1 -1.2 D-arabinitol 4-dehydrogenase compare
HSERO_RS10815 -2.0 -4.7 chromosome segregation protein SMC compare
HSERO_RS01780 -2.0 -1.5 translation initiation factor IF-1 compare
HSERO_RS17120 -2.0 -6.4 hydroxyacylglutathione hydrolase compare
HSERO_RS07755 -1.9 -4.0 glutamate racemase compare
HSERO_RS02340 -1.9 -10.1 dihydroorotase compare
HSERO_RS11085 -1.9 -5.8 L-aspartate oxidase compare
HSERO_RS15665 -1.9 -1.5 propionate catabolism operon regulatory protein PrpR compare
HSERO_RS18995 -1.9 -2.9 hypothetical protein compare
HSERO_RS05125 -1.9 -3.5 DeoR family transcripitonal regulator compare
HSERO_RS18360 -1.8 -2.8 hypothetical protein compare
HSERO_RS08605 -1.8 -2.1 Hsp33 chaperonin compare
HSERO_RS05910 -1.8 -1.9 phosphoribosylglycinamide formyltransferase compare
HSERO_RS09670 -1.8 -3.4 DNA repair protein RecO compare
HSERO_RS21340 -1.7 -4.0 septum formation inhibitor protein compare
HSERO_RS01990 -1.7 -3.3 shikimate 5-dehydrogenase compare
HSERO_RS09660 -1.6 -1.7 ribonuclease III compare
HSERO_RS19100 -1.6 -7.5 FAD-binding protein compare
HSERO_RS09155 -1.5 -7.6 DNA topoisomerase IV subunit B compare
HSERO_RS22040 -1.5 -4.3 CDP-glucose 4,6-dehydratase compare
HSERO_RS04860 -1.5 -1.0 sugar ABC transporter permease compare
HSERO_RS09145 -1.5 -2.8 DNA topoisomerase IV subunit A compare
HSERO_RS02700 -1.5 -1.6 hypothetical protein compare
HSERO_RS02630 -1.5 -2.2 membrane protein compare
HSERO_RS19575 -1.4 -1.9 50S ribosomal protein L25 compare
HSERO_RS03270 -1.4 -1.5 protein RecA compare
HSERO_RS02100 -1.4 -1.4 4-oxalocrotonate decarboxylase compare
HSERO_RS09335 -1.4 -1.5 DNA-3-methyladenine glycosylase compare
HSERO_RS19135 -1.4 -1.5 exodeoxyribonuclease compare
HSERO_RS18425 -1.4 -1.7 prephenate dehydrogenase compare
HSERO_RS00430 -1.3 -2.4 glutamate--cysteine ligase compare
HSERO_RS09290 -1.3 -2.5 ribonuclease R compare
HSERO_RS13880 -1.3 -1.1 hypothetical protein compare
HSERO_RS20600 -1.3 -3.3 transcription regulator protein compare
HSERO_RS02780 -1.3 -1.5 hypothetical protein compare
HSERO_RS09235 -1.3 -1.6 MarR family transcriptional regulator compare
HSERO_RS12995 -1.3 -2.1 DNAase compare
HSERO_RS09775 -1.3 -1.5 cobalamin synthase compare
HSERO_RS08115 -1.3 -1.4 acyl-CoA-binding protein compare
HSERO_RS10035 -1.3 -2.3 hypothetical protein compare
HSERO_RS22205 -1.2 -1.2 L-rhamnose mutarotase compare
HSERO_RS16595 -1.2 -1.9 hypothetical protein compare
HSERO_RS01455 -1.2 -1.4 hypothetical protein compare
HSERO_RS21640 -1.2 -2.6 recombinase RdgC compare
HSERO_RS06660 -1.2 -1.7 flavin reductase compare
HSERO_RS09455 -1.2 -1.9 NAD synthetase compare
HSERO_RS13965 -1.2 -2.1 single-stranded DNA exonuclease compare
HSERO_RS14150 -1.2 -1.5 RNA polymerase sigma factor compare
HSERO_RS19095 -1.2 -4.0 glycolate oxidase compare
HSERO_RS15070 -1.2 -1.4 ribosomal large subunit pseudouridine synthase D compare
HSERO_RS17720 -1.2 -3.8 aminopeptidase N compare
HSERO_RS07840 -1.1 -2.4 methionine ABC transporter substrate-binding protein compare
HSERO_RS05440 -1.1 -1.0 hypothetical protein compare
HSERO_RS22025 -1.1 -1.4 aromatic amino acid aminotransferase compare
HSERO_RS11435 -1.1 -1.9 IclR family transcriptional regulator compare
HSERO_RS02095 -1.1 -1.1 Holliday junction DNA helicase RuvB compare
HSERO_RS01105 -1.1 -1.4 hypothetical protein compare
HSERO_RS09390 -1.1 -3.3 recombinase RmuC compare
HSERO_RS15040 -1.1 -4.4 poly(R)-hydroxyalkanoic acid synthase compare
HSERO_RS10395 -1.1 -1.2 phosphate transport regulator compare
HSERO_RS22845 -1.1 -3.8 LysR family transcriptional regulator compare
HSERO_RS18455 -1.0 -2.8 phosphoglycolate phosphatase compare
HSERO_RS07140 -1.0 -2.8 glutamine-synthetase adenylyltransferase compare
HSERO_RS02000 -1.0 -1.8 magnesium transporter compare
HSERO_RS04550 -1.0 -2.5 capsid protein compare
HSERO_RS19265 -1.0 -1.2 LysR family transcriptional regulator compare
HSERO_RS21650 -1.0 -2.1 TetR family transcriptional regulator compare
HSERO_RS18355 -1.0 -2.9 recombinase RecR compare
HSERO_RS20370 -1.0 -2.8 ABC transporter ATP-binding protein compare
HSERO_RS23600 -1.0 -1.1 urea ABC transporter ATP-binding protein compare
HSERO_RS13255 -1.0 -1.9 cobyrinic acid a,c-diamide synthase compare
HSERO_RS15875 -1.0 -2.6 zinc ABC transporter permease compare
HSERO_RS15840 -1.0 -4.0 excinuclease ABC subunit B compare
HSERO_RS18875 -1.0 -1.0 ATPase compare
HSERO_RS11315 -1.0 -2.5 histidine kinase compare
HSERO_RS09990 -1.0 -1.1 glycosyl transferase compare
HSERO_RS13310 -1.0 -5.4 cobaltochelatase compare
HSERO_RS13055 -1.0 -1.9 energy transducer TonB compare
HSERO_RS21425 -1.0 -2.9 5,10-methylenetetrahydrofolate reductase compare
HSERO_RS20240 -0.9 -1.0 cytochrome B compare
HSERO_RS15780 -0.9 -2.2 GntR family transcriptional regulator compare
HSERO_RS18685 -0.9 -0.8 hypothetical protein compare
HSERO_RS18525 -0.9 -2.8 hypothetical protein compare
HSERO_RS08250 -0.9 -3.5 hypothetical protein compare
HSERO_RS19105 -0.9 -3.3 FAD-binding protein compare
HSERO_RS19520 -0.9 -1.3 hypothetical protein compare
HSERO_RS10865 -0.9 -3.4 PII uridylyl-transferase compare
HSERO_RS06170 -0.9 -1.1 S-adenosylmethionine tRNA ribosyltransferase compare
HSERO_RS02315 -0.9 -2.0 transcriptional regulator compare
HSERO_RS17640 -0.9 -2.4 Fe2+-dicitrate sensor membrane protein compare
HSERO_RS21100 -0.9 -4.6 UDP-N-acetylglucosamine 2-epimerase compare
HSERO_RS22995 -0.9 -2.1 antitoxin compare
HSERO_RS06610 -0.9 -2.8 oxidoreductase, molybdopterin-binding protein compare
HSERO_RS03235 -0.9 -1.0 hypothetical protein compare
HSERO_RS03565 -0.9 -2.9 metal-dependent hydrolase compare
HSERO_RS13320 -0.9 -2.2 membrane protein compare
HSERO_RS09250 -0.9 -1.2 hypothetical protein compare
HSERO_RS10410 -0.9 -1.3 alkyl hydroperoxide reductase compare
HSERO_RS21230 -0.9 -1.9 GntR family transcriptional regulator compare
HSERO_RS01095 -0.9 -2.4 hypothetical protein compare
HSERO_RS03060 -0.9 -2.6 DNA repair protein compare
HSERO_RS14375 -0.9 -1.4 IscN protein compare
HSERO_RS04340 -0.9 -2.7 gamma-glutamyl ligase compare
HSERO_RS06905 -0.9 -3.5 esterase compare
HSERO_RS18010 -0.8 -1.5 pseudouridine synthase compare
HSERO_RS10020 -0.8 -1.0 flippase compare
HSERO_RS09415 -0.8 -2.3 ribosomal large subunit pseudouridine synthase C compare
HSERO_RS10400 -0.8 -5.1 inorganic phosphate transporter compare
HSERO_RS09770 -0.8 -1.2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
HSERO_RS03575 -0.8 -0.8 D,D-heptose 1,7-bisphosphate phosphatase compare
HSERO_RS07800 -0.8 -1.6 transcriptional regulator compare
HSERO_RS03450 -0.8 -1.0 energy transducer protein TonB compare
HSERO_RS19550 -0.8 -1.8 hypothetical protein compare
HSERO_RS00810 -0.8 -0.8 glutaredoxin compare
HSERO_RS13275 -0.8 -1.2 cobalamin biosynthesis protein CbiG compare
HSERO_RS00410 -0.8 -1.2 phosphoheptose isomerase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Glycerol in Herbaspirillum seropedicae SmR1

For carbon source Glycerol across organisms