Experiment set2IT053 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Tryptophan carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS05860 -6.5 -4.5 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS14390 -6.2 -4.3 3-isopropylmalate dehydratase compare
RR42_RS30655 -6.2 -4.3 LysR family transcriptional regulator compare
RR42_RS14400 -6.1 -4.2 isopropylmalate isomerase compare
RR42_RS16265 -6.1 -4.9 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS16255 -5.9 -8.1 sulfate adenylyltransferase compare
RR42_RS33255 -5.9 -3.7 protein-tyrosine phosphatase compare
RR42_RS04535 -5.8 -4.0 cysteine synthase compare
RR42_RS06485 -5.6 -7.7 chorismate synthase compare
RR42_RS16275 -5.5 -3.8 membrane protein compare
RR42_RS19005 -5.5 -5.4 3-dehydroquinate synthase compare
RR42_RS11795 -5.5 -3.4 PEP synthetase regulatory protein compare
RR42_RS16250 -5.4 -7.4 sulfate adenylyltransferase compare
RR42_RS12040 -5.1 -10.9 MFS transporter compare
RR42_RS16245 -5.1 -4.9 uroporphyrin-III methyltransferase compare
RR42_RS01160 -5.0 -10.5 homoserine O-acetyltransferase compare
RR42_RS33260 -5.0 -5.9 multidrug MFS transporter compare
RR42_RS07425 -5.0 -6.8 IclR family transcriptional regulator compare
RR42_RS07555 -4.8 -3.3 potassium transporter Kup compare
RR42_RS04475 -4.7 -9.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS12175 -4.5 -12.2 malate synthase compare
RR42_RS05955 -4.5 -1.9 hypothetical protein compare
RR42_RS14385 -4.4 -6.6 3-isopropylmalate dehydrogenase compare
RR42_RS11790 -4.3 -10.7 phosphoenolpyruvate synthase compare
RR42_RS15905 -4.3 -12.1 phosphoenolpyruvate carboxylase compare
RR42_RS17645 -4.3 -6.6 shikimate dehydrogenase compare
RR42_RS01290 -4.2 -7.1 thiamine biosynthesis protein ThiC compare
RR42_RS30660 -4.2 -7.8 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS18485 -4.2 -1.7 glutaredoxin compare
RR42_RS01385 -4.1 -3.7 5,10-methylenetetrahydrofolate reductase compare
RR42_RS13530 -4.0 -4.7 4-hydroxybenzoyl-CoA thioesterase compare
RR42_RS14320 -3.9 -5.8 O-succinylhomoserine sulfhydrylase compare
RR42_RS33250 -3.9 -8.2 tyrosine protein kinase compare
RR42_RS33245 -3.8 -10.6 mannose-1-phosphate guanyltransferase compare
RR42_RS33240 -3.8 -14.9 GDP-L-fucose synthase compare
RR42_RS15400 -3.7 -8.4 acyl-CoA dehydrogenase compare
RR42_RS13550 -3.7 -4.5 3-hydroxyacyl-CoA dehydrogenase conserved
RR42_RS15385 -3.6 -13.1 Kynureninase (EC 3.7.1.3) (from data) conserved
RR42_RS16270 -3.6 -7.5 sulfite reductase compare
RR42_RS16280 -3.5 -5.2 transcriptional regulator compare
RR42_RS15390 -3.4 -6.8 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) (from data) conserved
RR42_RS18990 -3.4 -17.8 glutamate synthase compare
RR42_RS13555 -3.3 -12.1 anthraniloyl-CoA monooxygenase (EC 1.14.13.40) (from data) conserved
RR42_RS19010 -3.3 -5.3 shikimate kinase compare
RR42_RS01845 -3.2 -1.9 glycerol-3-phosphate dehydrogenase compare
RR42_RS16965 -3.0 -6.9 ABC transporter compare
RR42_RS33210 -3.0 -5.1 teichoic acid biosynthesis protein compare
RR42_RS33235 -2.9 -7.4 GDP-mannose 4,6-dehydratase compare
RR42_RS19090 -2.8 -2.5 cytochrome C compare
RR42_RS33355 -2.8 -6.4 membrane protein compare
RR42_RS20205 -2.8 -3.0 chromosome partitioning protein compare
RR42_RS18850 -2.8 -2.0 preprotein translocase subunit TatC compare
RR42_RS07605 -2.7 -6.1 poly-beta-hydroxybutyrate polymerase compare
RR42_RS04460 -2.6 -4.5 chorismate mutase compare
RR42_RS12550 -2.6 -3.9 hypothetical protein compare
RR42_RS16240 -2.6 -1.4 cobalamin biosynthesis protein CbiX compare
RR42_RS15375 -2.6 -5.3 AsnC family transcriptional regulator conserved
RR42_RS18855 -2.5 -4.5 preprotein translocase compare
RR42_RS18815 -2.5 -7.7 cytochrome C compare
RR42_RS21220 -2.5 -2.9 iron transporter FeoB compare
RR42_RS17390 -2.4 -6.9 ATP-dependent DNA helicase RecG compare
RR42_RS18985 -2.4 -5.4 glutamate synthase compare
RR42_RS18825 -2.4 -2.6 ubiquinol-cytochrome C reductase compare
RR42_RS15895 -2.3 -8.7 uroporphyrinogen III methyltransferase compare
RR42_RS05990 -2.3 -8.3 aromatic amino acid aminotransferase compare
RR42_RS01720 -2.3 -3.2 membrane protein compare
RR42_RS18820 -2.2 -7.8 cytochrome B compare
RR42_RS26905 -2.2 -5.7 methylcrotonoyl-CoA carboxylase compare
RR42_RS04590 -2.2 -8.6 AsnC family transcriptional regulator compare
RR42_RS13800 -2.2 -5.6 formyltetrahydrofolate deformylase compare
RR42_RS20195 -2.2 -1.5 ATPase F0F1 compare
RR42_RS15380 -2.1 -3.1 kynurenine formamidase compare
RR42_RS26900 -2.1 -3.0 enoyl-CoA hydratase compare
RR42_RS34215 -2.1 -1.6 ferredoxin compare
RR42_RS19885 -2.0 -1.7 aminoglycoside transporter compare
RR42_RS18930 -2.0 -2.9 BolA family transcriptional regulator compare
RR42_RS16960 -2.0 -7.6 ABC transporter ATP-binding protein compare
RR42_RS17505 -2.0 -7.1 NAD synthetase compare
RR42_RS24605 -2.0 -6.0 TetR family transcriptional regulator compare
RR42_RS13540 -2.0 -4.8 acyl-CoA dehydrogenase compare
RR42_RS06095 -1.9 -2.4 hypothetical protein compare
RR42_RS04895 -1.9 -10.3 serine/threonine protein phosphatase compare
RR42_RS07125 -1.8 -1.7 hypothetical protein compare
RR42_RS32085 -1.8 -1.4 hypothetical protein compare
RR42_RS02500 -1.8 -1.8 TetR family transcriptional regulator compare
RR42_RS01905 -1.8 -4.1 cytochrome C oxidase subunit II compare
RR42_RS31530 -1.7 -1.4 histidine kinase compare
RR42_RS04585 -1.7 -7.2 amino acid dehydrogenase compare
RR42_RS33575 -1.7 -2.8 hypothetical protein compare
RR42_RS02045 -1.7 -9.7 GTPase compare
RR42_RS03095 -1.7 -2.3 succinyl-CoA synthetase subunit beta compare
RR42_RS16970 -1.6 -9.3 ABC transporter ATP-binding protein compare
RR42_RS16980 -1.6 -10.0 branched-chain amino acid ABC transporter substrate-binding protein compare
RR42_RS17355 -1.6 -0.9 hypothetical protein compare
RR42_RS17490 -1.6 -3.4 NADP transhydrogenase subunit alpha compare
RR42_RS04700 -1.5 -1.5 ribonuclease G compare
RR42_RS17720 -1.5 -2.1 sugar kinase compare
RR42_RS29255 -1.5 -6.9 GTP cyclohydrolase compare
RR42_RS17060 -1.5 -10.6 histidine kinase compare
RR42_RS01915 -1.5 -6.2 cytochrome C oxidase subunit I compare
RR42_RS21790 -1.5 -2.3 short-chain dehydrogenase compare
RR42_RS01885 -1.5 -4.4 cytochrome C oxidase assembly protein compare
RR42_RS15050 -1.5 -6.7 DNA polymerase I compare
RR42_RS20310 -1.4 -1.1 copper-binding protein compare
RR42_RS01880 -1.4 -4.5 cytochrome oxidase subunit I compare
RR42_RS05920 -1.4 -3.9 HrcA family transcriptional regulator compare
RR42_RS01775 -1.4 -6.1 glutamate--cysteine ligase compare
RR42_RS00380 -1.4 -6.1 GntR family transcriptional regulator compare
RR42_RS13880 -1.4 -9.1 AMP-dependent synthetase compare
RR42_RS19065 -1.4 -7.3 transcriptional regulator compare
RR42_RS33215 -1.4 -8.4 transferase compare
RR42_RS12185 -1.4 -1.5 LysR family transcriptional regulator compare
RR42_RS01505 -1.4 -1.8 tRNA-Cys compare
RR42_RS16975 -1.4 -5.4 ABC transporter permease compare
RR42_RS22495 -1.4 -2.7 hypothetical protein compare
RR42_RS09555 -1.4 -2.0 universal stress protein UspA compare
RR42_RS31285 -1.4 -2.0 XRE family transcriptional regulator compare
RR42_RS17930 -1.3 -3.3 RNA pyrophosphohydrolase compare
RR42_RS01380 -1.3 -1.6 membrane protein compare
RR42_RS34815 -1.3 -2.8 diguanylate cyclase compare
RR42_RS23730 -1.3 -3.9 phenylacetate-CoA oxygenase subunit PaaB compare
RR42_RS24490 -1.3 -1.6 hypothetical protein compare
RR42_RS02705 -1.3 -2.1 Holliday junction DNA helicase RuvA compare
RR42_RS30640 -1.3 -5.3 DNA mismatch repair protein MutT compare
RR42_RS33650 -1.3 -2.3 IclR family transcriptional regulator compare
RR42_RS02085 -1.3 -4.6 RNA polymerase subunit sigma-54 compare
RR42_RS10365 -1.3 -3.4 ABC transporter compare
RR42_RS26895 -1.2 -4.3 3-methylcrotonyl-CoA carboxylase compare
RR42_RS19445 -1.2 -4.2 TetR family transcriptional regulator compare
RR42_RS07360 -1.2 -3.3 ATPase compare
RR42_RS13535 -1.2 -7.9 2-aminobenzoate-CoA ligase (EC 6.2.1.32) (from data) conserved
RR42_RS24930 -1.2 -0.9 AraC family transcriptional regulator compare
RR42_RS14055 -1.2 -2.8 elongation factor 4 compare
RR42_RS01910 -1.2 -3.9 cytochrome C oxidase subunit I compare
RR42_RS05715 -1.2 -5.5 acyl-CoA dehydrogenase compare
RR42_RS17555 -1.2 -1.3 hypothetical protein compare
RR42_RS01875 -1.2 -3.3 cytochrome C oxidase subunit II compare
RR42_RS03080 -1.2 -3.3 recombinase RecA compare
RR42_RS04015 -1.2 -1.5 RNA polymerase sigma factor compare
RR42_RS19765 -1.2 -2.2 arsenate reductase compare
RR42_RS08945 -1.2 -1.4 hypothetical protein compare
RR42_RS17055 -1.2 -5.6 LuxR family transcriptional regulator compare
RR42_RS00790 -1.2 -6.5 chemotaxis protein CheY compare
RR42_RS25200 -1.2 -3.5 TetR family transcriptional regulator compare
RR42_RS36105 -1.2 -3.2 MarR family transcriptional regulator compare
RR42_RS00955 -1.2 -5.1 hydroxymethylglutaryl-CoA lyase compare
RR42_RS01400 -1.2 -4.3 5-formyltetrahydrofolate cyclo-ligase compare
RR42_RS12590 -1.2 -1.0 50S ribosomal protein L9 compare
RR42_RS24040 -1.2 -3.4 hypothetical protein compare
RR42_RS03940 -1.1 -1.5 membrane protein compare
RR42_RS12615 -1.1 -2.1 LexA family transcriptional regulator compare
RR42_RS21820 -1.1 -2.6 GntR family transcriptional regulator compare
RR42_RS16260 -1.1 -0.7 phosphoadenosine phosphosulfate reductase compare
RR42_RS12180 -1.1 -2.6 haloacid dehalogenase compare
RR42_RS08575 -1.1 -1.1 tail protein compare
RR42_RS18350 -1.1 -2.6 NADPH:quinone dehydrogenase compare
RR42_RS33195 -1.1 -7.2 UDP-sugar lipid carrier transferase compare
RR42_RS24820 -1.1 -2.2 hypothetical protein compare
RR42_RS34520 -1.1 -0.9 transposase compare
RR42_RS31080 -1.1 -2.6 hypothetical protein compare
RR42_RS19680 -1.1 -2.1 hypothetical protein compare
RR42_RS35875 -1.1 -5.5 UDP-galactose-4-epimerase compare
RR42_RS17685 -1.1 -5.0 alkyl hydroperoxide reductase compare
RR42_RS34650 -1.1 -3.0 LacI family transcriptional regulator compare
RR42_RS18430 -1.1 -1.5 prevent-host-death protein compare
RR42_RS02785 -1.1 -3.2 dimethyladenosine transferase compare
RR42_RS03530 -1.1 -1.1 hypothetical protein compare
RR42_RS07045 -1.0 -2.0 hypothetical protein compare
RR42_RS34270 -1.0 -3.9 Fis family transcriptional regulator compare
RR42_RS17730 -1.0 -2.4 hypothetical protein compare
RR42_RS05980 -1.0 -5.6 TetR family transcriptional regulator compare
RR42_RS35915 -1.0 -2.9 beta-ketoadipyl CoA thiolase compare
RR42_RS21825 -1.0 -1.2 hypothetical protein compare
RR42_RS27065 -1.0 -1.3 hypothetical protein compare
RR42_RS32495 -1.0 -1.7 shikimate kinase compare
RR42_RS01920 -1.0 -2.1 protoheme IX farnesyltransferase compare
RR42_RS15890 -1.0 -4.7 heme biosynthesis protein HemY compare
RR42_RS18670 -1.0 -3.6 metal-dependent hydrolase compare
RR42_RS30320 -1.0 -1.9 hypothetical protein compare
RR42_RS34395 -1.0 -1.4 hypothetical protein compare
RR42_RS06805 -1.0 -2.2 hypothetical protein compare
RR42_RS16415 -1.0 -3.2 TetR family transcriptional regulator compare
RR42_RS19900 -1.0 -1.6 MerR family transcriptional regulator compare
RR42_RS34255 -0.9 -4.0 aldehyde dehydrogenase compare
RR42_RS23365 -0.9 -2.3 flagellar biosynthesis protein FliO compare
RR42_RS13015 -0.9 -4.0 fatty acid hydroxylase compare
RR42_RS02240 -0.9 -3.9 D-galactarate dehydratase compare
RR42_RS11480 -0.9 -2.3 cytochrome C compare
RR42_RS27710 -0.9 -1.9 LysR family transcriptional regulator compare
RR42_RS27045 -0.9 -1.7 hypothetical protein compare
RR42_RS35895 -0.9 -2.5 PadR family transcriptional regulator compare
RR42_RS31710 -0.9 -5.4 HxlR family transcriptional regulator compare
RR42_RS00860 -0.9 -2.4 MerR family transcriptional regulator compare
RR42_RS17020 -0.9 -4.3 quinolinate synthetase compare
RR42_RS31850 -0.9 -2.0 2-keto-4-pentenoate hydratase compare
RR42_RS11885 -0.9 -5.0 (protein-PII) uridylyltransferase compare
RR42_RS09180 -0.9 -0.9 Rrf2 family transcriptional regulator compare
RR42_RS27090 -0.9 -1.3 chemotaxis protein CheV compare
RR42_RS01780 -0.9 -4.6 glutathione synthetase compare
RR42_RS07565 -0.9 -4.2 transcription accessory protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source L-Tryptophan in Cupriavidus basilensis FW507-4G11

For carbon source L-Tryptophan across organisms