Experiment set2IT053 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Tryptophan carbon source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS02810 +2.1 5.2 acyl-phosphate glycerol 3-phosphate acyltransferase compare
RR42_RS05085 +1.8 5.3 2-aminomuconate deaminase compare
RR42_RS23140 +1.6 2.0 peptidylprolyl isomerase compare
RR42_RS08770 +1.5 1.9 2-nitropropane dioxygenase compare
RR42_RS07450 +1.3 6.2 ABC transporter permease compare
RR42_RS21470 +1.3 1.5 hypothetical protein compare
RR42_RS05425 +1.3 6.0 membrane protein compare
RR42_RS07140 +1.3 2.2 hypothetical protein compare
RR42_RS25650 +1.3 2.3 hypothetical protein compare
RR42_RS03635 +1.2 4.0 trypsin-like serine protease compare
RR42_RS05075 +1.2 2.6 aminocarboxymuconate-semialdehyde decarboxylase compare
RR42_RS21455 +1.2 3.6 transposase compare
RR42_RS24550 +1.2 1.6 hypothetical protein compare
RR42_RS05420 +1.2 7.3 membrane protein compare
RR42_RS20370 +1.2 2.1 pterin-4-alpha-carbinolamine dehydratase compare
RR42_RS33495 +1.2 9.9 L-phenylalanine:H+ symporter AroP (from data) compare
RR42_RS07455 +1.2 7.4 ABC transporter substrate-binding protein compare
RR42_RS33505 +1.1 4.1 AsnC family transcriptional regulator compare
RR42_RS17805 +1.1 1.3 hypothetical protein compare
RR42_RS04810 +1.1 2.0 glycine/betaine ABC transporter permease compare
RR42_RS15640 +1.1 1.4 hypothetical protein compare
RR42_RS08030 +1.0 1.2 hypothetical protein compare
RR42_RS10540 +1.0 3.0 acetyl-CoA acetyltransferase compare
RR42_RS35725 +1.0 2.4 flagellar biosynthesis protein FlgB compare
RR42_RS33500 +1.0 5.8 4-hydroxyphenylpyruvate dioxygenase compare
RR42_RS05975 +1.0 3.8 ferredoxin compare
RR42_RS17340 +1.0 3.0 glutathione peroxidase compare
RR42_RS01510 +0.9 4.7 N-acetylglutamate synthase compare
RR42_RS35900 +0.9 6.0 hypothetical protein compare
RR42_RS07155 +0.9 2.6 hypothetical protein compare
RR42_RS30765 +0.9 1.2 tRNA-Arg compare
RR42_RS28800 +0.9 5.9 isocitrate dehydrogenase compare
RR42_RS23230 +0.9 2.1 glycerate kinase compare
RR42_RS08245 +0.9 2.4 hypothetical protein compare
RR42_RS32960 +0.9 1.6 2-dehydropantoate 2-reductase compare
RR42_RS01785 +0.9 3.2 PTS fructose transporter subunit IIA compare
RR42_RS26050 +0.9 2.6 hypothetical protein compare
RR42_RS21605 +0.9 1.8 S-adenosylhomocysteine hydrolase compare
RR42_RS12370 +0.8 3.4 trans-aconitate methyltransferase compare
RR42_RS32710 +0.8 1.9 hypothetical protein compare
RR42_RS31750 +0.8 2.1 IclR family transcriptional regulator compare
RR42_RS22165 +0.8 2.1 hypothetical protein compare
RR42_RS08450 +0.8 1.6 hypothetical protein compare
RR42_RS13685 +0.8 2.2 cupin compare
RR42_RS24520 +0.8 2.7 hypothetical protein compare
RR42_RS30250 +0.8 2.4 peptide ABC transporter compare
RR42_RS17880 +0.8 1.1 hypothetical protein compare
RR42_RS12155 +0.8 2.0 molecular chaperone compare
RR42_RS19465 +0.8 5.4 AsnC family transcriptional regulator compare
RR42_RS05080 +0.8 2.3 3-hydroxyanthranilate 3,4-dioxygenase compare
RR42_RS30440 +0.8 3.2 cation:proton antiporter compare
RR42_RS31505 +0.8 1.2 hypothetical protein compare
RR42_RS01795 +0.7 6.1 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS21040 +0.7 1.0 hypothetical protein compare
RR42_RS19860 +0.7 1.0 tartronate semialdehyde reductase compare
RR42_RS36245 +0.7 2.1 excisionase compare
RR42_RS36445 +0.7 2.8 acetyl-CoA acetyltransferase compare
RR42_RS05750 +0.7 1.2 fructose 2,6-bisphosphatase compare
RR42_RS00115 +0.7 1.5 hypothetical protein compare
RR42_RS06240 +0.7 1.3 tryptophan--tRNA ligase compare
RR42_RS14840 +0.7 2.4 IclR family transcriptional regulator compare
RR42_RS08185 +0.7 1.3 hypothetical protein compare
RR42_RS34745 +0.7 2.1 hypothetical protein compare
RR42_RS13420 +0.7 2.3 phosphohistidine phosphatase compare
RR42_RS16495 +0.7 1.1 branched-chain amino acid aminotransferase compare
RR42_RS14405 +0.7 3.2 leucine/isoleucine/valine transporter ATP-binding subunit compare
RR42_RS09565 +0.7 2.0 hypothetical protein compare
RR42_RS12450 +0.7 2.9 hypothetical protein compare
RR42_RS04675 +0.7 1.7 alkylhydroperoxidase compare
RR42_RS12280 +0.7 2.7 aliphatic sulfonate ABC transporter ATP-binding protein compare
RR42_RS27035 +0.7 1.8 hypothetical protein compare
RR42_RS09850 +0.7 2.8 hypothetical protein compare
RR42_RS26085 +0.7 1.4 acetoacetyl-CoA reductase compare
RR42_RS15480 +0.7 1.7 acyl-CoA thioesterase compare
RR42_RS02855 +0.7 3.4 dimethylallyladenosine tRNA methylthiotransferase compare
RR42_RS04275 +0.7 1.7 hypothetical protein compare
RR42_RS21075 +0.7 0.9 phosphoribosyltransferase compare
RR42_RS19760 +0.6 2.0 hypothetical protein compare
RR42_RS08220 +0.6 1.3 hypothetical protein compare
RR42_RS16565 +0.6 1.0 hypothetical protein compare
RR42_RS20365 +0.6 4.2 phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) compare
RR42_RS36360 +0.6 1.7 pyridine nucleotide-disulfide oxidoreductase compare
RR42_RS18725 +0.6 1.6 hypothetical protein compare
RR42_RS31135 +0.6 2.0 hypothetical protein compare
RR42_RS04090 +0.6 2.0 type II secretion system protein compare
RR42_RS17495 +0.6 1.9 hypothetical protein compare
RR42_RS26540 +0.6 0.9 3-phosphoglycerate dehydrogenase compare
RR42_RS01435 +0.6 1.5 short-chain dehydrogenase compare
RR42_RS21695 +0.6 2.1 DNA-binding protein compare
RR42_RS06925 +0.6 1.1 hypothetical protein compare
RR42_RS27595 +0.6 2.9 hypothetical protein compare
RR42_RS21690 +0.6 0.7 acetyltransferase compare
RR42_RS04495 +0.6 1.7 integration host factor subunit beta compare
RR42_RS25015 +0.6 1.6 gluconolactonase compare
RR42_RS36920 +0.6 1.1 TetR family transcriptional regulator compare
RR42_RS13895 +0.6 2.5 transcriptional regulator compare
RR42_RS06910 +0.6 2.4 hypothetical protein compare
RR42_RS34450 +0.6 1.9 glycosyl transferase compare
RR42_RS29610 +0.6 0.5 cytochrome C2 compare
RR42_RS16670 +0.6 1.8 cytochrome C compare
RR42_RS03655 +0.6 3.1 hypothetical protein compare
RR42_RS34700 +0.6 2.6 hypothetical protein compare
RR42_RS14520 +0.6 1.0 mobilization protein compare
RR42_RS15705 +0.6 2.4 glycosyl transferase family 1 compare
RR42_RS20640 +0.6 1.6 TetR family transcriptional regulator compare
RR42_RS07710 +0.6 2.5 chloroperoxidase compare
RR42_RS23595 +0.6 1.7 dTDP-4-dehydrorhamnose 3,5-epimerase compare
RR42_RS12215 +0.6 1.7 ribonuclease compare
RR42_RS10675 +0.6 1.0 hypothetical protein compare
RR42_RS36335 +0.6 1.0 enoyl-CoA hydratase compare
RR42_RS24535 +0.6 1.3 tRNA-Asn compare
RR42_RS35240 +0.6 1.2 acyl-CoA dehydrogenase compare
RR42_RS35110 +0.6 1.0 hypothetical protein compare
RR42_RS10020 +0.6 1.5 4-methylmuconolactone methylisomerase compare
RR42_RS30445 +0.6 2.1 cation:proton antiporter compare
RR42_RS09240 +0.6 0.6 MFS transporter compare
RR42_RS35695 +0.6 1.3 flagellar L-ring protein FlgH compare
RR42_RS28065 +0.6 1.1 ribose-phosphate pyrophosphokinase compare
RR42_RS31575 +0.6 2.0 GntR family transcriptional regulator compare
RR42_RS16395 +0.6 2.8 hypothetical protein compare
RR42_RS30310 +0.6 1.0 signal transduction protein compare
RR42_RS03525 +0.6 0.8 type VI secretion system effector compare
RR42_RS15290 +0.6 1.5 cupin compare
RR42_RS26385 +0.6 3.0 hypothetical protein compare
RR42_RS09820 +0.5 2.2 hypothetical protein compare
RR42_RS36570 +0.5 1.3 prevent-host-death protein compare
RR42_RS20855 +0.5 1.7 cold-shock protein compare
RR42_RS00265 +0.5 1.8 phosphate ABC transporter ATP-binding protein compare
RR42_RS15060 +0.5 1.0 membrane protein compare
RR42_RS05330 +0.5 1.0 xanthine dehydrogenase compare
RR42_RS33695 +0.5 1.5 membrane protein compare
RR42_RS05210 +0.5 4.1 malic enzyme compare
RR42_RS17580 +0.5 2.2 spermidine synthase compare
RR42_RS09945 +0.5 1.7 hypothetical protein compare
RR42_RS10855 +0.5 0.6 diguanylate phosphodiesterase compare
RR42_RS07350 +0.5 3.2 hypothetical protein compare
RR42_RS05755 +0.5 1.1 enoyl-CoA hydratase compare
RR42_RS16185 +0.5 2.2 malonyl-CoA decarboxylase compare
RR42_RS29020 +0.5 2.3 hypothetical protein compare
RR42_RS07920 +0.5 1.0 cyclophilin-like superfamily protein compare
RR42_RS02065 +0.5 0.7 phosphate starvation-inducible protein PsiF compare
RR42_RS10400 +0.5 1.8 hypothetical protein compare
RR42_RS09060 +0.5 1.3 glucose-6-phosphate isomerase compare
RR42_RS16460 +0.5 1.1 cupin compare
RR42_RS12335 +0.5 1.8 twin-arginine translocation pathway signal protein compare
RR42_RS30360 +0.5 2.8 cytochrome C signal peptide protein compare
RR42_RS03935 +0.5 2.8 purine permease compare
RR42_RS34525 +0.5 1.3 type VI secretion protein VasK compare
RR42_RS28615 +0.5 1.7 ABC transporter substrate-binding protein compare
RR42_RS07365 +0.5 1.6 pyruvate dehydrogenase compare
RR42_RS04415 +0.5 3.5 ABC transporter compare
RR42_RS01010 +0.5 2.5 glutathione S-transferase compare
RR42_RS32740 +0.5 0.7 enoyl-CoA hydratase compare
RR42_RS21925 +0.5 1.0 membrane protein compare
RR42_RS02870 +0.5 2.4 RNA helicase compare
RR42_RS37320 +0.5 0.8 hypothetical protein compare
RR42_RS18390 +0.5 2.7 hypothetical protein compare
RR42_RS24010 +0.5 1.1 hypothetical protein compare
RR42_RS13620 +0.5 0.7 ferredoxin compare
RR42_RS03980 +0.5 1.3 Fis family transcriptional regulator compare
RR42_RS14335 +0.5 1.2 sporulation protein compare
RR42_RS13130 +0.5 1.4 membrane protein compare
RR42_RS07530 +0.5 3.1 ABC transporter permease compare
RR42_RS21850 +0.5 1.0 3-oxoadipate enol-lactonase compare
RR42_RS22700 +0.5 2.8 phasin compare
RR42_RS16675 +0.5 0.6 hypothetical protein compare
RR42_RS01970 +0.5 2.4 maleylacetoacetate isomerase compare
RR42_RS24970 +0.5 2.5 acetyl-CoA acetyltransferase compare
RR42_RS15755 +0.5 1.1 acetyltransferase compare
RR42_RS00645 +0.5 1.3 allophanate hydrolase compare
RR42_RS31055 +0.5 1.1 3-hydroxybutyryl-CoA dehydrogenase compare
RR42_RS04060 +0.5 1.0 hypothetical protein compare
RR42_RS32775 +0.5 1.2 hypothetical protein compare
RR42_RS11460 +0.5 2.4 pyrroloquinoline quinone biosynthesis protein PqqB compare
RR42_RS07760 +0.5 2.2 thiamine biosynthesis protein ApbE compare
RR42_RS00345 +0.5 0.5 LysR family transcriptional regulator compare
RR42_RS09665 +0.5 2.8 hypothetical protein compare
RR42_RS00655 +0.5 0.6 membrane protein compare
RR42_RS22120 +0.5 2.1 type VI secretion protein compare
RR42_RS05600 +0.5 2.3 acyl-CoA dehydrogenase compare
RR42_RS25400 +0.5 1.3 MarR family transcriptional regulator compare
RR42_RS36300 +0.5 1.9 IclR family transcriptional regulator compare
RR42_RS13625 +0.5 1.3 4-hydroxybenzoyl-CoA reductase compare
RR42_RS08670 +0.5 2.0 ATP synthase I compare
RR42_RS06020 +0.5 0.5 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS14125 +0.5 0.8 metal-binding protein compare
RR42_RS07310 +0.5 1.6 hypothetical protein compare
RR42_RS03385 +0.5 2.1 sugar kinase compare
RR42_RS10500 +0.5 1.4 hypothetical protein compare
RR42_RS19645 +0.5 1.0 DNA topoisomerase compare
RR42_RS26080 +0.5 0.5 hypothetical protein compare
RR42_RS27705 +0.5 1.3 NAD-dependent deacetylase compare
RR42_RS07130 +0.5 1.0 hypothetical protein compare
RR42_RS11005 +0.5 1.9 4-hydroxybutyrate dehydrogenase compare
RR42_RS00490 +0.5 1.1 potassium-transporting ATPase subunit C compare
RR42_RS28175 +0.5 2.6 hypothetical protein compare
RR42_RS22240 +0.5 1.9 UDP-N-acetylglucosamine 1-carboxyvinyltransferase compare
RR42_RS31715 +0.5 1.1 hypothetical protein compare
RR42_RS36680 +0.5 1.4 hypothetical protein compare
RR42_RS36835 +0.5 1.1 cytochrome P450 compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source L-Tryptophan in Cupriavidus basilensis FW507-4G11

For carbon source L-Tryptophan across organisms