Experiment set2IT053 for Ralstonia sp. UNC404CL21Col

Compare to:

Sodium propionate carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS14540 -7.2 -7.1 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS14500 -6.6 -11.1 tryptophan synthase subunit beta compare
ABZR87_RS00200 -6.6 -4.5 phosphoadenylyl-sulfate reductase compare
ABZR87_RS02160 -6.3 -7.5 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS02570 -6.3 -21.3 glutamate synthase-related protein compare
ABZR87_RS16740 -6.3 -8.6 2-methylcitrate synthase compare
ABZR87_RS02565 -6.0 -5.9 glutamate synthase subunit beta compare
ABZR87_RS07360 -5.9 -15.8 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS09465 -5.7 -7.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS16170 -5.6 -7.7 argininosuccinate lyase compare
ABZR87_RS02145 -5.6 -3.9 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS02640 -5.6 -16.6 diaminopimelate decarboxylase compare
ABZR87_RS13790 -5.6 -13.0 chorismate synthase compare
ABZR87_RS14535 -5.4 -6.4 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS14490 -5.4 -9.7 tryptophan synthase subunit alpha compare
ABZR87_RS16730 -5.4 -9.7 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS16140 -5.4 -19.8 phosphoenolpyruvate carboxylase compare
ABZR87_RS07380 -5.3 -14.5 FAD/FMN-binding oxidoreductase compare
ABZR87_RS14530 -5.3 -9.5 3-isopropylmalate dehydrogenase compare
ABZR87_RS16745 -5.3 -9.5 methylisocitrate lyase compare
ABZR87_RS14505 -5.3 -7.2 phosphoribosylanthranilate isomerase compare
ABZR87_RS09445 -5.2 -14.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS06770 -5.2 -11.5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS05200 -5.1 -18.9 homoserine O-acetyltransferase compare
ABZR87_RS02595 -5.1 -12.2 shikimate kinase compare
ABZR87_RS08695 -5.0 -16.8 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS16735 -5.0 -20.7 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS00835 -5.0 -4.9 argininosuccinate synthase compare
ABZR87_RS08625 -5.0 -4.9 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS05590 -4.9 -4.8 orotate phosphoribosyltransferase compare
ABZR87_RS09450 -4.7 -10.0 prephenate dehydratase compare
ABZR87_RS09935 -4.7 -5.6 amino acid aminotransferase compare
ABZR87_RS22970 -4.7 -13.0 cystathionine gamma-synthase family protein compare
ABZR87_RS13250 -4.7 -5.7 phosphoserine phosphatase SerB compare
ABZR87_RS02590 -4.7 -12.9 3-dehydroquinate synthase compare
ABZR87_RS05170 -4.6 -3.2 acetylglutamate kinase compare
ABZR87_RS07050 -4.5 -3.1 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS07060 -4.5 -16.8 RNA polymerase factor sigma-54 compare
ABZR87_RS02140 -4.5 -18.2 anthranilate synthase component I compare
ABZR87_RS07665 -4.4 -13.1 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS04865 -4.4 -6.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS02155 -4.3 -8.9 anthranilate phosphoribosyltransferase compare
ABZR87_RS08630 -4.2 -10.8 dihydroorotase compare
ABZR87_RS01810 -4.1 -5.6 glutamate 5-kinase compare
ABZR87_RS00185 -4.0 -4.7 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS14950 -3.9 -4.3 acetolactate synthase small subunit compare
ABZR87_RS08700 -3.8 -15.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS00190 -3.8 -12.7 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS16750 -3.7 -10.6 propionate catabolism operon regulatory protein PrpR compare
ABZR87_RS12790 -3.7 -6.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS11440 -3.7 -8.1 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS11925 -3.7 -15.7 phosphoenolpyruvate synthase compare
ABZR87_RS01110 -3.6 -11.6 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS00210 -3.6 -10.5 nitrite/sulfite reductase compare
ABZR87_RS00285 -3.4 -2.3 acetylornithine transaminase compare
ABZR87_RS14955 -3.4 -4.6 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS14380 -3.4 -9.6 glutamate racemase compare
ABZR87_RS07635 -3.2 -3.1 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS09895 -3.2 -2.5 DUF1841 family protein compare
ABZR87_RS00205 -3.2 -4.1 DUF934 domain-containing protein compare
ABZR87_RS01645 -3.2 -5.0 type II 3-dehydroquinate dehydratase compare
ABZR87_RS13300 -3.1 -12.2 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS06705 -3.1 -14.9 glutamate--cysteine ligase compare
ABZR87_RS15440 -2.9 -3.4 ribonuclease G compare
ABZR87_RS05100 -2.8 -10.7 RNA polymerase-binding protein DksA compare
ABZR87_RS07005 -2.8 -3.8 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS00195 -2.6 -5.0 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS11125 -2.5 -7.9 cell division protein ZapE compare
ABZR87_RS16660 -2.4 -4.8 helix-turn-helix domain-containing protein compare
ABZR87_RS00435 -2.4 -9.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS09515 -2.2 -2.1 cysteine synthase CysM compare
ABZR87_RS07705 -2.2 -4.6 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS10240 -2.1 -3.2 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS16180 -2.1 -3.7 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS11815 -2.1 -9.0 [protein-PII] uridylyltransferase compare
ABZR87_RS10400 -2.1 -3.6 hypothetical protein compare
ABZR87_RS14115 -2.0 -7.8 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS04785 -2.0 -11.8 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS14675 -2.0 -1.7 glyoxalase compare
ABZR87_RS06710 -2.0 -14.4 glutathione synthase compare
ABZR87_RS22300 -2.0 -2.0 flagellar biosynthesis anti-sigma factor FlgM compare
ABZR87_RS05025 -2.0 -3.0 rod shape-determining protein MreC compare
ABZR87_RS12785 -2.0 -7.9 endopeptidase La compare
ABZR87_RS02480 -1.9 -2.6 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS01605 -1.9 -8.3 shikimate dehydrogenase compare
ABZR87_RS13290 -1.9 -8.1 3-ketoacyl-ACP reductase compare
ABZR87_RS16185 -1.9 -2.8 dCTP deaminase compare
ABZR87_RS12795 -1.8 -6.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS11435 -1.8 -4.0 Mth938-like domain-containing protein compare
ABZR87_RS16960 -1.7 -4.7 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS10785 -1.7 -5.5 exodeoxyribonuclease V subunit beta compare
ABZR87_RS00220 -1.7 -5.5 CysB family HTH-type transcriptional regulator compare
ABZR87_RS00325 -1.7 -3.0 peptidylprolyl isomerase compare
ABZR87_RS05015 -1.6 -5.3 penicillin-binding protein 2 compare
ABZR87_RS03420 -1.6 -2.0 type II secretion system minor pseudopilin GspI compare
ABZR87_RS03780 -1.5 -1.7 thiosulfate oxidation carrier protein SoxY compare
ABZR87_RS14360 -1.4 -8.0 acetate--CoA ligase compare
ABZR87_RS02575 -1.4 -4.5 transposase compare
ABZR87_RS12345 -1.3 -1.6 dethiobiotin synthase compare
ABZR87_RS10610 -1.3 -1.5 inositol monophosphatase family protein compare
ABZR87_RS09635 -1.3 -2.4 ribosome small subunit-dependent GTPase A compare
ABZR87_RS05580 -1.3 -2.0 diaminopimelate epimerase compare
ABZR87_RS06745 -1.3 -5.3 S41 family peptidase compare
ABZR87_RS16250 -1.3 -3.4 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS07955 -1.2 -9.6 sensor histidine kinase compare
ABZR87_RS20495 -1.2 -1.8 hypothetical protein compare
ABZR87_RS10120 -1.2 -1.2 YceD family protein compare
ABZR87_RS07960 -1.2 -9.0 response regulator transcription factor compare
ABZR87_RS08750 -1.2 -4.2 lipopolysaccharide heptosyltransferase I compare
ABZR87_RS00215 -1.2 -3.3 sulfite exporter TauE/SafE family protein compare
ABZR87_RS07735 -1.2 -3.3 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR87_RS10980 -1.2 -2.2 tRNA-Leu compare
ABZR87_RS10085 -1.1 -1.6 Rne/Rng family ribonuclease compare
ABZR87_RS03075 -1.1 -6.7 AGE family epimerase/isomerase compare
ABZR87_RS13475 -1.1 -5.4 PAS domain S-box protein compare
ABZR87_RS08985 -1.1 -7.4 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS10620 -1.1 -1.3 serine O-acetyltransferase compare
ABZR87_RS05010 -1.1 -3.3 rod shape-determining protein RodA compare
ABZR87_RS09500 -1.1 -2.9 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
ABZR87_RS10780 -1.1 -3.3 PD-(D/E)XK nuclease family protein compare
ABZR87_RS21940 -1.1 -1.2 hypothetical protein compare
ABZR87_RS08640 -1.1 -4.9 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS06645 -1.1 -1.2 TlpA disulfide reductase family protein compare
ABZR87_RS06495 -1.0 -1.5 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS14665 -1.0 -1.8 histidine phosphatase family protein compare
ABZR87_RS04125 -1.0 -3.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS08645 -1.0 -1.2 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS16165 -1.0 -1.1 anti-sigma factor compare
ABZR87_RS08970 -1.0 -4.5 protein TolQ compare
ABZR87_RS01615 -1.0 -2.3 RNB domain-containing ribonuclease compare
ABZR87_RS11265 -1.0 -2.4 amino acid ABC transporter ATP-binding protein compare
ABZR87_RS10170 -1.0 -4.7 RseA family anti-sigma factor compare
ABZR87_RS01245 -0.9 -3.1 Dps family protein compare
ABZR87_RS05065 -0.9 -2.8 tyrosine recombinase XerC compare
ABZR87_RS13350 -0.9 -3.5 potassium transporter Kup compare
ABZR87_RS06395 -0.9 -4.2 response regulator compare
ABZR87_RS18035 -0.9 -2.5 flagellar synthesis regulator FleN compare
ABZR87_RS08710 -0.9 -6.0 sugar transferase compare
ABZR87_RS12295 -0.8 -1.8 muconate/chloromuconate family cycloisomerase compare
ABZR87_RS10550 -0.8 -1.5 outer membrane protein assembly factor BamC compare
ABZR87_RS06715 -0.8 -3.1 PTS sugar transporter subunit IIA compare
ABZR87_RS21795 -0.8 -3.7 NUDIX domain-containing protein compare
ABZR87_RS07620 -0.8 -2.5 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS04995 -0.8 -2.2 DNA topoisomerase III compare
ABZR87_RS11585 -0.8 -3.0 gamma-glutamylcyclotransferase compare
ABZR87_RS23265 -0.8 -2.1 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS11195 -0.8 -4.7 pseudouridine synthase compare
ABZR87_RS10195 -0.8 -3.4 signal peptidase I compare
ABZR87_RS09710 -0.8 -2.5 tRNA-Arg compare
ABZR87_RS21245 -0.8 -1.2 1,2-phenylacetyl-CoA epoxidase subunit PaaD compare
ABZR87_RS04860 -0.8 -2.2 phage holin family protein compare
ABZR87_RS11015 -0.7 -3.9 amino-acid N-acetyltransferase compare
ABZR87_RS12260 -0.7 -2.0 (2Fe-2S)-binding protein compare
ABZR87_RS09460 -0.7 -3.0 prephenate dehydrogenase compare
ABZR87_RS14575 -0.7 -2.2 GntR family transcriptional regulator compare
ABZR87_RS00310 -0.7 -4.5 branched-chain amino acid ABC transporter permease compare
ABZR87_RS10175 -0.7 -4.3 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS01800 -0.7 -2.7 RNA pyrophosphohydrolase compare
ABZR87_RS15575 -0.7 -2.0 hypothetical protein compare
ABZR87_RS15810 -0.7 -2.4 hypothetical protein compare
ABZR87_RS22910 -0.7 -1.6 6-phosphogluconolactonase compare
ABZR87_RS13705 -0.7 -1.0 integration host factor subunit alpha compare
ABZR87_RS14375 -0.7 -1.8 fumarate hydratase compare
ABZR87_RS05350 -0.7 -2.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS07675 -0.7 -5.0 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS22330 -0.7 -2.0 hypothetical protein compare
ABZR87_RS00830 -0.7 -1.7 pyrimidine/purine nucleoside phosphorylase compare
ABZR87_RS08795 -0.7 -3.1 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS07625 -0.7 -1.4 Holliday junction branch migration protein RuvA compare
ABZR87_RS00795 -0.7 -2.2 site-specific tyrosine recombinase XerD compare
ABZR87_RS04945 -0.7 -2.2 DUF4390 domain-containing protein compare
ABZR87_RS09505 -0.7 -4.0 ADP-glyceromanno-heptose 6-epimerase compare
ABZR87_RS14235 -0.7 -3.8 formyltetrahydrofolate deformylase compare
ABZR87_RS07430 -0.7 -1.6 FmdB family zinc ribbon protein compare
ABZR87_RS15250 -0.7 -3.6 PP2C family serine/threonine-protein phosphatase compare
ABZR87_RS21285 -0.7 -0.9 TetR/AcrR family transcriptional regulator compare
ABZR87_RS12750 -0.6 -1.8 ABC transporter ATP-binding protein compare
ABZR87_RS14510 -0.6 -2.5 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS21050 -0.6 -2.0 DUF1295 domain-containing protein compare
ABZR87_RS08505 -0.6 -1.6 CpaE family protein compare
ABZR87_RS08040 -0.6 -4.0 lipopolysaccharide heptosyltransferase II compare
ABZR87_RS21950 -0.6 -2.2 hypothetical protein compare
ABZR87_RS08715 -0.6 -5.5 ATP-grasp domain-containing protein compare
ABZR87_RS13645 -0.6 -0.9 hypothetical protein compare
ABZR87_RS13415 -0.6 -3.5 IclR family transcriptional regulator compare
ABZR87_RS05060 -0.6 -2.0 DUF484 family protein compare
ABZR87_RS20250 -0.6 -1.3 type VI secretion system lipoprotein TssJ compare
ABZR87_RS14720 -0.6 -2.6 urease accessory UreF family protein compare
ABZR87_RS00295 -0.6 -1.8 ABC transporter ATP-binding protein compare
ABZR87_RS07020 -0.6 -4.5 dynamin-like GTPase family protein compare
ABZR87_RS00625 -0.6 -1.2 hypothetical protein compare
ABZR87_RS15715 -0.6 -3.5 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS06325 -0.6 -2.6 MerR family DNA-binding transcriptional regulator compare
ABZR87_RS04105 -0.6 -2.4 ATP synthase subunit I compare
ABZR87_RS07535 -0.6 -2.2 amino acid ABC transporter ATP-binding protein compare
ABZR87_RS15405 -0.6 -2.1 YebC/PmpR family DNA-binding transcriptional regulator compare
ABZR87_RS00305 -0.6 -4.4 ABC transporter ATP-binding protein compare
ABZR87_RS17970 -0.6 -1.1 methyl-accepting chemotaxis protein compare
ABZR87_RS07710 -0.6 -3.2 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
ABZR87_RS18320 -0.6 -1.1 HEAT repeat domain-containing protein compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in carbon source experiments

For carbon source Sodium propionate across organisms