Experiment set2IT053 for Burkholderia phytofirmans PsJN

Compare to:

LB with Lomefloxacin hydrochloride 0.001 mM

200 most important genes:

  gene name fitness t score description  
BPHYT_RS14865 -7.9 -5.1 UDP-glucose 6-dehydrogenase compare
BPHYT_RS16175 -5.1 -3.5 hemolysin D compare
BPHYT_RS34815 -4.5 -4.3 ABC transporter compare
BPHYT_RS02865 -3.9 -5.3 hypothetical protein compare
BPHYT_RS33580 -3.8 -6.0 geranyltranstransferase compare
BPHYT_RS04290 -3.8 -3.4 glycosyl transferase family 2 compare
BPHYT_RS21335 -3.8 -3.1 CDP-alcohol phosphatidyltransferase compare
BPHYT_RS21340 -3.5 -6.2 2OG-Fe(II) oxygenase compare
BPHYT_RS34805 -3.4 -9.7 ABC transporter compare
BPHYT_RS34810 -3.4 -5.5 RND transporter compare
BPHYT_RS01485 -3.2 -1.6 histidine kinase compare
BPHYT_RS14070 -3.1 -3.8 hypothetical protein compare
BPHYT_RS29750 -3.0 -5.1 phosphoenolpyruvate phosphomutase compare
BPHYT_RS34780 -2.7 -4.9 phytoene synthase compare
BPHYT_RS23740 -2.7 -9.6 AraC family transcriptional regulator compare
BPHYT_RS16710 -2.6 -2.4 LysR family transcriptional regulator compare
BPHYT_RS23840 -2.6 -5.2 methyltransferase compare
BPHYT_RS21350 -2.5 -3.9 ADP-glucose pyrophosphorylase compare
BPHYT_RS17760 -2.5 -6.3 ABC transporter permease compare
BPHYT_RS06190 -2.4 -5.2 heptosyltransferase compare
BPHYT_RS13245 -2.4 -7.2 hypothetical protein compare
BPHYT_RS29740 -2.3 -6.6 2-aminoethylphosphonate aminotransferase compare
BPHYT_RS12235 -2.2 -7.7 DNA repair protein RadA conserved
BPHYT_RS03560 -2.2 -10.8 DNA repair protein conserved
BPHYT_RS17745 -2.2 -6.4 toluene tolerance family protein compare
BPHYT_RS08850 -2.2 -2.8 transcriptional regulator compare
BPHYT_RS02285 -2.2 -6.6 cell division protein compare
BPHYT_RS10095 -2.1 -2.1 integrase compare
BPHYT_RS14740 -2.0 -10.7 threonine-phosphate decarboxylase compare
BPHYT_RS14245 -1.9 -2.3 membrane protein compare
BPHYT_RS29745 -1.9 -4.5 phosphonopyruvate decarboxylase compare
BPHYT_RS17765 -1.9 -4.6 toluene ABC transporter ATP-binding protein compare
BPHYT_RS33515 -1.9 -5.6 porin compare
BPHYT_RS12615 -1.9 -2.0 dihydrodipicolinate synthase compare
BPHYT_RS17755 -1.8 -4.5 ABC transporter substrate-binding protein compare
BPHYT_RS20185 -1.8 -2.5 sugar transferase compare
BPHYT_RS04285 -1.8 -2.8 rhamnosyltransferase compare
BPHYT_RS02860 -1.7 -1.7 membrane protein compare
BPHYT_RS09315 -1.6 -1.3 chemotaxis protein CheY compare
BPHYT_RS18655 -1.6 -5.9 3-oxoacyl-ACP synthase compare
BPHYT_RS16445 -1.5 -2.9 RNA helicase compare
BPHYT_RS36220 -1.5 -1.5 hypothetical protein compare
BPHYT_RS15865 -1.5 -4.9 exodeoxyribonuclease VII large subunit compare
BPHYT_RS16835 -1.5 -6.3 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS09690 -1.5 -1.7 phosphate starvation-inducible protein PsiF compare
BPHYT_RS15950 -1.5 -6.5 tyrosine recombinase XerD compare
BPHYT_RS06325 -1.5 -4.0 ATPase compare
BPHYT_RS08765 -1.5 -1.2 ABC transporter ATP-binding protein compare
BPHYT_RS34825 -1.5 -9.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS15325 -1.4 -4.2 ribonuclease PH compare
BPHYT_RS14400 -1.4 -4.0 anti-sigma factor compare
BPHYT_RS01455 -1.4 -1.2 peptide deformylase compare
BPHYT_RS07130 -1.4 -1.8 biopolymer transporter ExbD compare
BPHYT_RS04385 -1.4 -4.2 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS33610 -1.4 -1.4 DNA polymerase I compare
BPHYT_RS08235 -1.4 -1.2 nucleoprotein, Hfg, host factor I compare
BPHYT_RS23475 -1.4 -1.7 luciferase compare
BPHYT_RS04370 -1.3 -2.1 glycosyl transferase compare
BPHYT_RS02570 -1.3 -5.7 phosphocarrier protein HPr compare
BPHYT_RS33150 -1.3 -1.2 beta-lactamase compare
BPHYT_RS16270 -1.3 -2.8 phosphoglycerate kinase compare
BPHYT_RS26820 -1.3 -1.5 LysR family transcriptional regulator compare
BPHYT_RS29085 -1.3 -2.0 LysR family transcriptional regulator compare
BPHYT_RS03620 -1.2 -6.6 poly(A) polymerase compare
BPHYT_RS09650 -1.2 -1.9 hypothetical protein compare
BPHYT_RS03110 -1.2 -2.1 MarR family transcriptional regulator compare
BPHYT_RS31260 -1.2 -1.8 histidine kinase compare
BPHYT_RS17545 -1.2 -4.0 cold-shock protein compare
BPHYT_RS17675 -1.2 -2.9 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS03400 -1.2 -0.8 ATP-dependent DNA helicase RecG compare
BPHYT_RS33690 -1.2 -2.2 molybdate ABC transporter permease compare
BPHYT_RS14855 -1.1 -2.1 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS03725 -1.1 -1.6 serine hydroxymethyltransferase compare
BPHYT_RS03625 -1.1 -5.2 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS05730 -1.1 -3.1 hypothetical protein compare
BPHYT_RS12510 -1.1 -2.4 RNA-binding protein compare
BPHYT_RS30485 -1.1 -1.2 ABC transporter ATP-binding protein compare
BPHYT_RS25970 -1.1 -1.1 urea amidolyase compare
BPHYT_RS12465 -1.1 -2.6 inositol monophosphatase compare
BPHYT_RS16665 -1.1 -3.0 peroxiredoxin compare
BPHYT_RS22910 -1.1 -1.2 hypothetical protein compare
BPHYT_RS23650 -1.1 -0.9 hypothetical protein compare
BPHYT_RS14845 -1.1 -2.1 cysteine synthase compare
BPHYT_RS02135 -1.1 -2.4 glyoxylate reductase compare
BPHYT_RS10645 -1.1 -1.1 cyanate hydratase compare
BPHYT_RS00690 -1.0 -1.1 transcriptional regulator compare
BPHYT_RS09480 -1.0 -1.1 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS26380 -1.0 -2.0 cobalamin biosynthesis protein CobT compare
BPHYT_RS33360 -1.0 -2.1 formyl-CoA transferase compare
BPHYT_RS02575 -1.0 -6.6 phosphoenolpyruvate-protein phosphotransferase compare
BPHYT_RS06600 -1.0 -1.6 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS30795 -1.0 -1.1 short-chain dehydrogenase compare
BPHYT_RS23770 -1.0 -2.0 GntR family transcriptional regulator compare
BPHYT_RS26855 -1.0 -2.7 carboxyvinyl-carboxyphosphonate phosphorylmutase compare
BPHYT_RS15075 -1.0 -1.2 dihydrokaempferol 4-reductase compare
BPHYT_RS16290 -1.0 -1.1 hypothetical protein compare
BPHYT_RS02180 -1.0 -2.5 hypothetical protein compare
BPHYT_RS02590 -1.0 -5.5 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS06175 -0.9 -3.3 LPS biosynthesis compare
BPHYT_RS03640 -0.9 -3.4 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS10845 -0.9 -3.4 UbiD family decarboxylase compare
BPHYT_RS24500 -0.9 -1.6 histidine kinase compare
BPHYT_RS06320 -0.9 -2.3 chemotaxis protein CheY compare
BPHYT_RS15575 -0.9 -5.5 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
BPHYT_RS11480 -0.9 -1.8 heme ABC transporter ATP-binding protein compare
BPHYT_RS28360 -0.9 -1.2 carboxymuconolactone decarboxylase compare
BPHYT_RS03655 -0.9 -1.1 membrane protein compare
BPHYT_RS03685 -0.9 -3.3 Tol system periplasmic component YbgF compare
BPHYT_RS02965 -0.9 -2.9 membrane protein compare
BPHYT_RS10695 -0.9 -1.2 aromatic-ring-hydroxylating dioxygenase subunit beta compare
BPHYT_RS05065 -0.9 -2.6 DNA mismatch repair protein MutS compare
BPHYT_RS08960 -0.9 -1.2 threonine synthase compare
BPHYT_RS17520 -0.9 -3.9 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS01435 -0.9 -8.3 LysR family transcriptional regulator compare
BPHYT_RS18760 -0.9 -2.6 flagellar biosynthesis protein FliT compare
BPHYT_RS02555 -0.9 -5.3 glutamate--cysteine ligase compare
BPHYT_RS14515 -0.9 -5.3 DNA recombination protein RmuC compare
BPHYT_RS17035 -0.9 -3.0 sugar kinase compare
BPHYT_RS14370 -0.9 -1.9 ribonuclease III compare
BPHYT_RS06375 -0.9 -3.6 ribonuclease compare
BPHYT_RS09070 -0.9 -4.0 recombination protein RecR compare
BPHYT_RS09105 -0.9 -2.9 protein-L-isoaspartate O-methyltransferase compare
BPHYT_RS20850 -0.9 -1.8 multidrug DMT transporter permease compare
BPHYT_RS23155 -0.9 -1.2 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) compare
BPHYT_RS23455 -0.9 -0.9 phosphorylase compare
BPHYT_RS18875 -0.9 -4.2 flagellar basal body rod protein FlgF compare
BPHYT_RS22500 -0.9 -2.2 transcriptional regulator compare
BPHYT_RS09515 -0.9 -3.2 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS36090 -0.9 -1.4 hypothetical protein compare
BPHYT_RS29485 -0.8 -1.6 phosphonate ABC transporter ATP-binding protein compare
BPHYT_RS03480 -0.8 -3.3 ferritin compare
BPHYT_RS33045 -0.8 -1.5 response regulator receiver protein compare
BPHYT_RS07600 -0.8 -2.9 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS27155 -0.8 -1.3 peroxiredoxin compare
BPHYT_RS22580 -0.8 -1.2 transcriptional regulator compare
BPHYT_RS11685 -0.8 -1.0 phasin family protein compare
BPHYT_RS09755 -0.8 -1.1 glycosyl transferase family 1 compare
BPHYT_RS20690 -0.8 -1.9 ABC transporter permease compare
BPHYT_RS14395 -0.8 -3.6 sugar dehydratase compare
BPHYT_RS13835 -0.8 -0.9 S-adenosylhomocysteine nucleosidase compare
BPHYT_RS12785 -0.8 -2.9 Rrf2 family transcriptional regulator compare
BPHYT_RS08385 -0.8 -1.2 secretion protein compare
BPHYT_RS30010 -0.8 -1.2 cell division protein compare
BPHYT_RS35770 -0.8 -1.1 glyoxalase compare
BPHYT_RS30260 -0.8 -2.4 hypothetical protein compare
BPHYT_RS09100 -0.8 -2.6 stationary phase survival protein SurE compare
BPHYT_RS30145 -0.8 -3.0 aconitate hydratase compare
BPHYT_RS28350 -0.8 -1.7 fatty acid desaturase compare
BPHYT_RS17670 -0.8 -3.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS02610 -0.8 -3.1 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS11400 -0.8 -1.3 hypothetical protein compare
BPHYT_RS33125 -0.8 -1.2 hypothetical protein compare
BPHYT_RS20940 -0.8 -1.7 citrate synthase compare
BPHYT_RS34680 -0.8 -3.6 hypothetical protein compare
BPHYT_RS26330 -0.8 -1.8 hypothetical protein compare
BPHYT_RS14505 -0.8 -1.5 membrane protein compare
BPHYT_RS29320 -0.8 -1.1 histidine kinase compare
BPHYT_RS27230 -0.8 -1.5 hypothetical protein compare
BPHYT_RS03280 -0.8 -1.2 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS25710 -0.8 -1.5 hypothetical protein compare
BPHYT_RS15890 -0.7 -1.0 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
BPHYT_RS31060 -0.7 -1.0 capsular polysaccharide biosynthesis protein compare
BPHYT_RS05320 -0.7 -1.3 beta-lactamase compare
BPHYT_RS23525 -0.7 -1.0 hypothetical protein compare
BPHYT_RS15280 -0.7 -3.7 porin compare
BPHYT_RS22515 -0.7 -3.7 multidrug efflux RND transporter permease subunit compare
BPHYT_RS04455 -0.7 -0.9 glycosyl transferase compare
BPHYT_RS27495 -0.7 -0.9 hypothetical protein compare
BPHYT_RS04630 -0.7 -2.0 amino acid ABC transporter permease compare
BPHYT_RS31385 -0.7 -1.6 ketoacyl reductase compare
BPHYT_RS33590 -0.7 -4.7 Rieske (2Fe-2S) protein compare
BPHYT_RS35005 -0.7 -2.9 molecular chaperone DnaJ compare
BPHYT_RS07605 -0.7 -3.3 hypothetical protein compare
BPHYT_RS04095 -0.7 -0.8 SAM-dependent methyltransferase PhcB compare
BPHYT_RS00530 -0.7 -1.5 hypothetical protein compare
BPHYT_RS21870 -0.7 -1.8 hypothetical protein compare
BPHYT_RS21770 -0.7 -1.0 aldehyde dehydrogenase compare
BPHYT_RS05235 -0.7 -0.9 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase compare
BPHYT_RS17640 -0.7 -1.6 2-alkenal reductase compare
BPHYT_RS07540 -0.7 -0.7 hypothetical protein compare
BPHYT_RS21855 -0.7 -1.8 hypothetical protein compare
BPHYT_RS18925 -0.7 -3.9 RNA polymerase sigma70 compare
BPHYT_RS30505 -0.7 -1.6 ABC transporter permease compare
BPHYT_RS22520 -0.7 -2.2 RND transporter compare
BPHYT_RS31805 -0.7 -2.2 beta-lactamase compare
BPHYT_RS30635 -0.7 -2.0 D-aminopeptidase compare
BPHYT_RS12640 -0.7 -3.9 phosphoesterase compare
BPHYT_RS11950 -0.7 -2.8 DSBA oxidoreductase compare
BPHYT_RS01630 -0.7 -1.6 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS00295 -0.7 -1.4 hypothetical protein compare
BPHYT_RS13250 -0.7 -1.1 hypothetical protein compare
BPHYT_RS08995 -0.7 -0.7 hypothetical protein compare
BPHYT_RS11075 -0.7 -0.9 membrane protein compare
BPHYT_RS28405 -0.7 -1.8 membrane protein compare
BPHYT_RS04950 -0.7 -4.9 hypothetical protein compare
BPHYT_RS08455 -0.7 -3.9 ribonuclease R compare
BPHYT_RS14390 -0.6 -2.3 peptidase compare
BPHYT_RS18865 -0.6 -2.1 flagellar L-ring protein FlgH compare
BPHYT_RS12590 -0.6 -1.0 dual-specificity RNA methyltransferase RlmN compare
BPHYT_RS09265 -0.6 -1.3 chemotaxis protein CheY compare


Specific Phenotypes

For 6 genes in this experiment

For stress Lomefloxacin hydrochloride in Burkholderia phytofirmans PsJN

For stress Lomefloxacin hydrochloride across organisms