Experiment set2IT053 for Burkholderia phytofirmans PsJN

Compare to:

LB with Lomefloxacin hydrochloride 0.001 mM

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS16180 +4.5 8.2 TetR family transcriptional regulator compare
BPHYT_RS17095 +2.9 10.5 proline--tRNA ligase compare
BPHYT_RS08060 +2.3 14.5 ribosome maturation factor RimP compare
BPHYT_RS05190 +2.0 7.8 ADP-heptose--LPS heptosyltransferase compare
BPHYT_RS12150 +1.9 13.7 PII uridylyl-transferase compare
BPHYT_RS13605 +1.9 3.0 tRNA-Pro compare
BPHYT_RS06985 +1.9 9.1 fumarate hydratase compare
BPHYT_RS09145 +1.9 10.9 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS12840 +1.9 7.4 pyruvate dehydrogenase compare
BPHYT_RS02815 +1.8 8.1 methyltransferase compare
BPHYT_RS09160 +1.8 9.3 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS12280 +1.8 1.9 RNA helicase compare
BPHYT_RS05155 +1.6 11.0 acetyltransferase GCN5 compare
BPHYT_RS14755 +1.6 5.2 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS33885 +1.6 13.2 tRNA pseudouridine synthase A compare
BPHYT_RS17730 +1.6 11.1 metal-dependent hydrolase compare
BPHYT_RS16675 +1.6 5.8 dihydroorotase compare
BPHYT_RS02975 +1.6 3.6 membrane protein compare
BPHYT_RS17735 +1.5 8.6 ABC transporter ATP-binding protein compare
BPHYT_RS03645 +1.5 3.4 tRNA dimethylallyltransferase compare
BPHYT_RS08125 +1.5 11.1 ATPase compare
BPHYT_RS13645 +1.4 12.1 threonine--tRNA ligase compare
BPHYT_RS23910 +1.4 1.7 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS17920 +1.3 3.0 protein CyaY compare
BPHYT_RS19680 +1.3 10.3 glutamate--cysteine ligase compare
BPHYT_RS26570 +1.3 1.9 5'-nucleotidase compare
BPHYT_RS04340 +1.3 6.4 hypothetical protein compare
BPHYT_RS16345 +1.3 6.5 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS33735 +1.3 4.7 hypothetical protein compare
BPHYT_RS06550 +1.3 3.3 acetolactate synthase compare
BPHYT_RS19570 +1.2 10.4 sodium/hydrogen exchanger compare
BPHYT_RS33740 +1.2 6.6 hypothetical protein compare
BPHYT_RS16840 +1.2 4.3 transketolase compare
BPHYT_RS34175 +1.2 8.8 N-acylglucosamine 2-epimerase compare
BPHYT_RS22835 +1.2 2.1 flagellar motor protein MotA compare
BPHYT_RS16340 +1.2 6.8 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS06535 +1.2 3.6 membrane protein compare
BPHYT_RS25005 +1.1 2.1 FMN reductase compare
BPHYT_RS31400 +1.1 1.8 methyl-accepting chemotaxis protein compare
BPHYT_RS21485 +1.1 1.9 hypothetical protein compare
BPHYT_RS32210 +1.1 0.8 hypothetical protein compare
BPHYT_RS06085 +1.1 6.0 ferredoxin compare
BPHYT_RS17525 +1.1 2.2 glutaredoxin compare
BPHYT_RS15710 +1.1 2.3 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS33535 +1.1 9.9 RNA polymerase sigma factor RpoD compare
BPHYT_RS25470 +1.1 1.9 alkylhydroperoxidase compare
BPHYT_RS33865 +1.1 5.3 tryptophan synthase alpha chain compare
BPHYT_RS08410 +1.1 1.4 dehydrogenase compare
BPHYT_RS16065 +1.1 1.2 LacI family transcriptional regulator compare
BPHYT_RS15620 +1.1 4.1 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS19565 +1.0 5.8 gamma-glutamyl:cysteine ligase compare
BPHYT_RS12815 +1.0 5.5 IclR family transcriptional regulator compare
BPHYT_RS17340 +1.0 6.6 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91) (from data) compare
BPHYT_RS06990 +1.0 1.7 membrane protein compare
BPHYT_RS08190 +1.0 1.7 type II secretion system protein compare
BPHYT_RS09500 +1.0 5.8 glucose-6-phosphate isomerase compare
BPHYT_RS11555 +1.0 1.4 allantoinase compare
BPHYT_RS09290 +1.0 7.0 helicase compare
BPHYT_RS16880 +1.0 2.3 malic enzyme compare
BPHYT_RS15305 +1.0 5.3 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
BPHYT_RS33890 +1.0 5.3 fimbrial protein FimV compare
BPHYT_RS23265 +1.0 5.5 methylcrotonoyl-CoA carboxylase compare
BPHYT_RS12820 +1.0 4.8 D-alanyl-D-alanine carboxypeptidase compare
BPHYT_RS06790 +0.9 5.3 hypothetical protein compare
BPHYT_RS10500 +0.9 1.9 acetolactate synthase compare
BPHYT_RS15615 +0.9 3.7 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS09860 +0.9 1.2 pilus assembly protein PilP compare
BPHYT_RS05570 +0.9 2.3 hypothetical protein compare
BPHYT_RS01115 +0.9 2.5 hypothetical protein compare
BPHYT_RS01790 +0.9 6.9 LuxR family transcriptional regulator compare
BPHYT_RS04335 +0.9 1.7 membrane protein compare
BPHYT_RS25075 +0.9 1.6 AraC family transcriptional regulator compare
BPHYT_RS36320 +0.9 2.5 type IV secretion system family protein compare
BPHYT_RS29975 +0.9 3.0 multidrug ABC transporter ATP-binding protein compare
BPHYT_RS33920 +0.9 5.9 type II citrate synthase compare
BPHYT_RS01795 +0.9 5.8 histidine kinase compare
BPHYT_RS15415 +0.9 6.5 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS20115 +0.9 2.7 transcriptional regulator compare
BPHYT_RS08565 +0.9 1.7 dihydroorotate dehydrogenase compare
BPHYT_RS02035 +0.9 1.6 hypothetical protein compare
BPHYT_RS09620 +0.9 3.3 aminodeoxychorismate lyase compare
BPHYT_RS31755 +0.9 1.4 amino acid ABC transporter ATPase compare
BPHYT_RS02595 +0.9 1.6 sulfurtransferase compare
BPHYT_RS15585 +0.9 2.1 acetyltransferase compare
BPHYT_RS05255 +0.9 1.7 phage abortive infection protein compare
BPHYT_RS26160 +0.9 3.0 membrane protein compare
BPHYT_RS14205 +0.8 6.0 lytic transglycosylase compare
BPHYT_RS04365 +0.8 5.7 membrane protein compare
BPHYT_RS17530 +0.8 5.0 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS09970 +0.8 2.0 glutathione S-transferase compare
BPHYT_RS02525 +0.8 5.0 membrane protein compare
BPHYT_RS35215 +0.8 1.0 dehydrogenase compare
BPHYT_RS19025 +0.8 6.0 transcriptional regulator compare
BPHYT_RS06685 +0.8 1.8 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS30865 +0.8 1.5 sugar ABC transporter ATP-binding protein compare
BPHYT_RS02770 +0.8 2.7 membrane protein compare
BPHYT_RS08245 +0.8 2.5 anti-sigma factor compare
BPHYT_RS14255 +0.8 5.8 ABC transporter compare
BPHYT_RS33215 +0.8 3.8 glycosyltransferase compare
BPHYT_RS03780 +0.8 3.0 acyl-CoA dehydrogenase compare
BPHYT_RS25640 +0.8 2.2 MFS transporter compare
BPHYT_RS10465 +0.8 2.5 hypothetical protein compare
BPHYT_RS31050 +0.8 1.0 epimerase compare
BPHYT_RS18590 +0.8 1.1 hypothetical protein compare
BPHYT_RS29855 +0.8 1.0 protein-tyrosine-phosphatase compare
BPHYT_RS01730 +0.8 1.4 serine/threonine protein kinase compare
BPHYT_RS33905 +0.7 1.9 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS22940 +0.7 1.6 pilus assembly protein TadE compare
BPHYT_RS08000 +0.7 1.7 antibiotic biosynthesis monooxygenase compare
BPHYT_RS02660 +0.7 1.2 membrane protein compare
BPHYT_RS08600 +0.7 1.6 hypothetical protein compare
BPHYT_RS21585 +0.7 1.9 short-chain dehydrogenase compare
BPHYT_RS23275 +0.7 1.7 3-methylcrotonyl-CoA carboxylase subunit alpha compare
BPHYT_RS18745 +0.7 3.2 coniferyl aldehyde dehydrogenase compare
BPHYT_RS25875 +0.7 1.3 type III secretion protein compare
BPHYT_RS10320 +0.7 1.2 hypothetical protein compare
BPHYT_RS02650 +0.7 1.7 membrane protein compare
BPHYT_RS00955 +0.7 1.5 DNA polymerase compare
BPHYT_RS27800 +0.7 1.6 esterase compare
BPHYT_RS28365 +0.7 1.5 Germin subfamily 1 member 15 compare
BPHYT_RS21215 +0.7 2.7 Crp/Fnr family transcriptional regulator compare
BPHYT_RS02640 +0.7 5.9 cytochrome C oxidase compare
BPHYT_RS12145 +0.7 4.6 methionine aminopeptidase compare
BPHYT_RS03925 +0.7 1.8 LysR family transcriptional regulator compare
BPHYT_RS26435 +0.7 1.5 hypothetical protein compare
BPHYT_RS12845 +0.7 5.7 ATPase compare
BPHYT_RS23030 +0.7 1.3 gluconate 2-dehydrogenase compare
BPHYT_RS14250 +0.7 4.4 glycosyl transferase compare
BPHYT_RS30870 +0.7 2.0 chromate transporter compare
BPHYT_RS34670 +0.7 2.7 integrase compare
BPHYT_RS26775 +0.7 0.9 chemotaxis protein CheB compare
BPHYT_RS02395 +0.7 2.8 ABC transporter compare
BPHYT_RS07675 +0.7 2.4 ABC transporter for L-Arginine, permease component 2 (from data) compare
BPHYT_RS17885 +0.7 3.1 3-dehydroquinate synthase compare
BPHYT_RS11530 +0.7 1.3 5-hydroxyisourate hydrolase compare
BPHYT_RS28620 +0.7 1.5 enoyl-CoA hydratase compare
BPHYT_RS24305 +0.7 1.9 glutathione S-transferase compare
BPHYT_RS06255 +0.7 2.1 spore coat protein U compare
BPHYT_RS28850 +0.7 2.6 hypothetical protein compare
BPHYT_RS17725 +0.6 3.3 BolA family transcriptional regulator compare
BPHYT_RS28995 +0.6 2.3 histidine kinase compare
BPHYT_RS20665 +0.6 0.8 LysR family transcriptional regulator compare
BPHYT_RS18625 +0.6 4.3 allophanate hydrolase compare
BPHYT_RS03505 +0.6 2.3 FAD-binding protein compare
BPHYT_RS19020 +0.6 3.7 transcriptional regulator compare
BPHYT_RS30995 +0.6 0.7 glucose-1-phosphate thymidylyltransferase compare
BPHYT_RS24045 +0.6 2.2 amino acid ABC transporter compare
BPHYT_RS26750 +0.6 1.1 aldolase compare
BPHYT_RS16030 +0.6 3.7 Kynureninase (EC 3.7.1.3) (from data) compare
BPHYT_RS06070 +0.6 4.2 cytochrome C compare
BPHYT_RS19985 +0.6 0.9 CoA-transferase compare
BPHYT_RS04450 +0.6 3.1 UDP-glucose 4-epimerase compare
BPHYT_RS06200 +0.6 3.4 glycosyl transferase compare
BPHYT_RS06400 +0.6 3.8 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS26930 +0.6 2.9 mechanosensitive ion channel protein compare
BPHYT_RS13080 +0.6 1.1 hypothetical protein compare
BPHYT_RS28690 +0.6 0.9 diguanylate phosphodiesterase compare
BPHYT_RS19890 +0.6 1.1 hypothetical protein compare
BPHYT_RS09125 +0.6 4.1 23S rRNA methyltransferase compare
BPHYT_RS20425 +0.6 1.8 hypothetical protein compare
BPHYT_RS09440 +0.6 2.4 glycerate kinase compare
BPHYT_RS07920 +0.6 1.5 hypothetical protein compare
BPHYT_RS08030 +0.6 1.8 transposase compare
BPHYT_RS11970 +0.6 1.0 cupin compare
BPHYT_RS33220 +0.6 4.5 group 1 glycosyl transferase compare
BPHYT_RS12830 +0.6 2.7 dihydrolipoamide dehydrogenase compare
BPHYT_RS03015 +0.6 0.8 aldolase compare
BPHYT_RS15530 +0.6 2.6 glutathione ABC transporter permease compare
BPHYT_RS02690 +0.6 4.2 protoheme IX farnesyltransferase compare
BPHYT_RS31510 +0.6 1.5 sulfonate ABC transporter substrate-binding protein compare
BPHYT_RS07425 +0.6 0.8 hypothetical protein compare
BPHYT_RS33680 +0.6 1.7 phosphoesterase compare
BPHYT_RS06410 +0.6 2.2 transcriptional regulator compare
BPHYT_RS00380 +0.6 2.1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS26085 +0.6 2.3 ABC transporter substrate-binding protein compare
BPHYT_RS26925 +0.6 1.2 NIPSNAP family containing protein compare
BPHYT_RS16905 +0.6 3.6 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS33540 +0.6 1.5 hypothetical protein compare
BPHYT_RS29865 +0.6 1.2 sugar transferase compare
BPHYT_RS02825 +0.6 2.1 ferredoxin compare
BPHYT_RS17490 +0.6 1.6 haloacid dehalogenase compare
BPHYT_RS09850 +0.6 1.2 molybdopterin oxidoreductase compare
BPHYT_RS32435 +0.6 1.5 formate dehydrogenase-N subunit beta compare
BPHYT_RS17945 +0.6 1.5 cytochrome C biogenesis protein compare
BPHYT_RS16350 +0.6 3.1 hypothetical protein compare
BPHYT_RS02635 +0.6 4.8 membrane protein compare
BPHYT_RS31515 +0.6 1.5 agmatinase compare
BPHYT_RS05355 +0.6 2.1 Crp/Fnr family transcriptional regulator compare
BPHYT_RS17380 +0.6 4.1 ribulose-phosphate 3-epimerase compare
BPHYT_RS21790 +0.6 1.1 hypothetical protein compare
BPHYT_RS09280 +0.6 0.8 pyridoxal-5'-phosphate-dependent protein subunit beta compare
BPHYT_RS07585 +0.6 2.6 N-formylglutamate deformylase (EC 3.5.1.68) (from data) compare
BPHYT_RS06105 +0.6 0.9 hypothetical protein compare
BPHYT_RS02985 +0.6 1.1 MaoC family dehydratase compare
BPHYT_RS22480 +0.6 2.8 cytochrome C551 compare
BPHYT_RS10260 +0.6 1.1 hypothetical protein compare
BPHYT_RS08955 +0.6 1.9 homoserine dehydrogenase compare
BPHYT_RS20520 +0.6 1.0 transcriptional regulator compare
BPHYT_RS01935 +0.6 4.4 lipoprotein compare
BPHYT_RS20545 +0.6 1.4 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For stress Lomefloxacin hydrochloride in Burkholderia phytofirmans PsJN

For stress Lomefloxacin hydrochloride across organisms