Experiment set2IT052 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Phenylalanine carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS16265 -8.2 -5.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS18305 -6.5 -4.5 anthranilate phosphoribosyltransferase compare
RR42_RS14390 -6.3 -4.3 3-isopropylmalate dehydratase compare
RR42_RS16255 -6.3 -6.1 sulfate adenylyltransferase compare
RR42_RS06485 -6.1 -6.0 chorismate synthase compare
RR42_RS16250 -6.0 -5.8 sulfate adenylyltransferase compare
RR42_RS14320 -6.0 -4.1 O-succinylhomoserine sulfhydrylase compare
RR42_RS19005 -5.9 -4.1 3-dehydroquinate synthase compare
RR42_RS30655 -5.9 -5.7 LysR family transcriptional regulator compare
RR42_RS14400 -5.7 -5.5 isopropylmalate isomerase compare
RR42_RS05860 -5.7 -5.5 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS14385 -5.6 -5.4 3-isopropylmalate dehydrogenase compare
RR42_RS14365 -5.2 -5.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS20365 -5.0 -10.6 phenylalanine-4-hydroxylase conserved
RR42_RS16275 -4.9 -4.8 membrane protein compare
RR42_RS07555 -4.9 -3.3 potassium transporter Kup compare
RR42_RS04475 -4.6 -10.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS16270 -4.6 -10.6 sulfite reductase compare
RR42_RS33250 -4.5 -6.2 tyrosine protein kinase compare
RR42_RS18295 -4.5 -12.7 anthranilate synthase component I compare
RR42_RS01160 -4.4 -8.4 homoserine O-acetyltransferase compare
RR42_RS12925 -4.4 -3.9 ATPase compare
RR42_RS33240 -4.3 -17.6 GDP-L-fucose synthase compare
RR42_RS01970 -4.2 -9.4 maleylacetoacetate isomerase compare
RR42_RS01385 -4.1 -3.8 5,10-methylenetetrahydrofolate reductase compare
RR42_RS02500 -4.1 -3.9 TetR family transcriptional regulator compare
RR42_RS17645 -3.9 -8.2 shikimate dehydrogenase compare
RR42_RS05965 -3.9 -3.0 malonic semialdehyde reductase compare
RR42_RS33260 -3.8 -8.1 multidrug MFS transporter compare
RR42_RS16245 -3.7 -4.9 uroporphyrin-III methyltransferase compare
RR42_RS18300 -3.7 -4.1 anthranilate synthase subunit II compare
RR42_RS04535 -3.7 -6.5 cysteine synthase compare
RR42_RS16280 -3.6 -6.3 transcriptional regulator compare
RR42_RS33355 -3.4 -6.9 membrane protein compare
RR42_RS31270 -3.4 -5.5 fumarylacetoacetase compare
RR42_RS30660 -3.4 -8.5 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS01435 -3.3 -3.9 short-chain dehydrogenase compare
RR42_RS07425 -3.3 -8.0 IclR family transcriptional regulator compare
RR42_RS01290 -3.2 -6.0 thiamine biosynthesis protein ThiC compare
RR42_RS01845 -3.2 -2.0 glycerol-3-phosphate dehydrogenase compare
RR42_RS33255 -3.2 -2.4 protein-tyrosine phosphatase compare
RR42_RS11795 -3.2 -3.2 PEP synthetase regulatory protein compare
RR42_RS33245 -3.2 -8.2 mannose-1-phosphate guanyltransferase compare
RR42_RS33210 -3.2 -5.9 teichoic acid biosynthesis protein compare
RR42_RS33235 -3.1 -7.1 GDP-mannose 4,6-dehydratase compare
RR42_RS14360 -3.0 -1.7 tryptophan synthase subunit alpha compare
RR42_RS33500 -2.9 -9.4 4-hydroxyphenylpyruvate dioxygenase compare
RR42_RS16240 -2.6 -1.5 cobalamin biosynthesis protein CbiX compare
RR42_RS13800 -2.5 -7.4 formyltetrahydrofolate deformylase compare
RR42_RS01775 -2.5 -5.9 glutamate--cysteine ligase compare
RR42_RS20205 -2.5 -3.7 chromosome partitioning protein compare
RR42_RS20370 -2.4 -1.5 pterin-4-alpha-carbinolamine dehydratase compare
RR42_RS26900 -2.4 -3.8 enoyl-CoA hydratase compare
RR42_RS31275 -2.3 -7.0 Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (from data) conserved
RR42_RS26905 -2.2 -6.8 methylcrotonoyl-CoA carboxylase compare
RR42_RS15000 -2.2 -3.6 GTP cyclohydrolase compare
RR42_RS06555 -2.2 -6.0 3-oxoacid CoA-transferase (EC 2.8.3.5), subunit A (from data) compare
RR42_RS21220 -2.2 -2.9 iron transporter FeoB compare
RR42_RS27550 -2.2 -1.6 hypothetical protein compare
RR42_RS03080 -2.2 -4.6 recombinase RecA compare
RR42_RS05955 -2.2 -1.8 hypothetical protein compare
RR42_RS12550 -2.1 -5.9 hypothetical protein compare
RR42_RS34215 -2.1 -1.8 ferredoxin compare
RR42_RS23730 -2.0 -4.8 phenylacetate-CoA oxygenase subunit PaaB compare
RR42_RS33490 -2.0 -10.1 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) (from data) conserved
RR42_RS33505 -1.9 -4.8 AsnC family transcriptional regulator compare
RR42_RS17720 -1.9 -3.3 sugar kinase compare
RR42_RS02705 -1.9 -2.8 Holliday junction DNA helicase RuvA compare
RR42_RS03095 -1.9 -2.4 succinyl-CoA synthetase subunit beta compare
RR42_RS18850 -1.8 -2.3 preprotein translocase subunit TatC compare
RR42_RS16260 -1.8 -1.0 phosphoadenosine phosphosulfate reductase compare
RR42_RS12040 -1.8 -10.4 MFS transporter compare
RR42_RS06095 -1.8 -4.6 hypothetical protein compare
RR42_RS13620 -1.8 -1.5 ferredoxin compare
RR42_RS20195 -1.7 -1.5 ATPase F0F1 compare
RR42_RS23745 -1.7 -3.6 phenylacetic acid degradation protein compare
RR42_RS21150 -1.7 -2.7 hypothetical protein compare
RR42_RS02310 -1.6 -3.8 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
RR42_RS30640 -1.6 -6.2 DNA mismatch repair protein MutT compare
RR42_RS01380 -1.6 -1.8 membrane protein compare
RR42_RS31280 -1.5 -3.3 hypothetical protein compare
RR42_RS01905 -1.5 -3.8 cytochrome C oxidase subunit II compare
RR42_RS19885 -1.5 -1.6 aminoglycoside transporter compare
RR42_RS24980 -1.5 -1.9 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase compare
RR42_RS31530 -1.4 -3.5 histidine kinase compare
RR42_RS15015 -1.4 -1.3 exodeoxyribonuclease VII small subunit compare
RR42_RS01720 -1.4 -1.5 membrane protein compare
RR42_RS32670 -1.4 -1.3 phenol hydroxylase compare
RR42_RS27915 -1.4 -1.6 acyl-CoA synthetase compare
RR42_RS18825 -1.4 -3.8 ubiquinol-cytochrome C reductase compare
RR42_RS01885 -1.4 -3.6 cytochrome C oxidase assembly protein compare
RR42_RS25785 -1.3 -2.2 TetR family transcriptional regulator compare
RR42_RS32740 -1.3 -1.2 enoyl-CoA hydratase compare
RR42_RS24605 -1.3 -6.2 TetR family transcriptional regulator compare
RR42_RS04700 -1.3 -1.6 ribonuclease G compare
RR42_RS18815 -1.3 -4.4 cytochrome C compare
RR42_RS01780 -1.3 -5.8 glutathione synthetase compare
RR42_RS20360 -1.3 -1.4 AsnC family transcriptional regulator compare
RR42_RS18140 -1.3 -1.8 MarR family transcriptional regulator compare
RR42_RS18820 -1.3 -5.1 cytochrome B compare
RR42_RS01920 -1.3 -3.1 protoheme IX farnesyltransferase compare
RR42_RS00955 -1.3 -5.3 hydroxymethylglutaryl-CoA lyase compare
RR42_RS04895 -1.3 -7.1 serine/threonine protein phosphatase compare
RR42_RS01915 -1.2 -3.5 cytochrome C oxidase subunit I compare
RR42_RS14055 -1.2 -2.5 elongation factor 4 compare
RR42_RS02250 -1.2 -3.5 GntR family transcriptional regulator compare
RR42_RS33650 -1.2 -2.9 IclR family transcriptional regulator compare
RR42_RS17390 -1.2 -4.2 ATP-dependent DNA helicase RecG compare
RR42_RS20440 -1.2 -1.7 histidine kinase compare
RR42_RS02420 -1.2 -1.1 SAM-dependent methyltransferase compare
RR42_RS01485 -1.2 -2.1 phosphonate transporter compare
RR42_RS00715 -1.2 -1.9 ferritin compare
RR42_RS17060 -1.2 -8.8 histidine kinase compare
RR42_RS25200 -1.2 -3.2 TetR family transcriptional regulator compare
RR42_RS15035 -1.2 -2.6 ZIP zinc transporter compare
RR42_RS18930 -1.1 -3.0 BolA family transcriptional regulator compare
RR42_RS37375 -1.1 -2.9 short-chain dehydrogenase compare
RR42_RS04955 -1.1 -1.2 hypothetical protein compare
RR42_RS06250 -1.1 -1.9 dihydrodipicolinate synthase compare
RR42_RS34650 -1.1 -3.3 LacI family transcriptional regulator compare
RR42_RS19685 -1.1 -2.0 thiosulfate oxidation carrier complex protein SoxZ compare
RR42_RS26455 -1.1 -1.1 amino acid ABC transporter ATP-binding protein compare
RR42_RS30545 -1.1 -2.8 cobalt-precorrin-6Y C(5)-methyltransferase compare
RR42_RS18670 -1.0 -4.0 metal-dependent hydrolase compare
RR42_RS12175 -1.0 -5.6 malate synthase compare
RR42_RS16910 -1.0 -1.4 histidine utilization protein HutD compare
RR42_RS04015 -1.0 -1.4 RNA polymerase sigma factor compare
RR42_RS35250 -1.0 -2.2 alpha/beta hydrolase compare
RR42_RS21820 -1.0 -3.8 GntR family transcriptional regulator compare
RR42_RS15525 -1.0 -0.9 hypothetical protein compare
RR42_RS19090 -1.0 -1.6 cytochrome C compare
RR42_RS31285 -1.0 -1.7 XRE family transcriptional regulator compare
RR42_RS17355 -1.0 -0.7 hypothetical protein compare
RR42_RS05485 -1.0 -2.0 polynucleotide phosphorylase/polyadenylase compare
RR42_RS29790 -1.0 -3.0 hypothetical protein compare
RR42_RS02045 -1.0 -6.1 GTPase compare
RR42_RS18855 -1.0 -2.7 preprotein translocase compare
RR42_RS17400 -1.0 -4.2 queuine tRNA-ribosyltransferase compare
RR42_RS17885 -0.9 -3.5 ABC transporter permease compare
RR42_RS16945 -0.9 -3.8 NAD-dependent dehydratase compare
RR42_RS14965 -0.9 -2.4 hypothetical protein compare
RR42_RS07890 -0.9 -1.9 hypothetical protein compare
RR42_RS22760 -0.9 -3.8 GntR family transcriptional regulator compare
RR42_RS17880 -0.9 -0.9 hypothetical protein compare
RR42_RS21435 -0.9 -2.4 hypothetical protein compare
RR42_RS23725 -0.9 -3.7 phenylacetate-CoA oxygenase compare
RR42_RS18310 -0.9 -0.7 indole-3-glycerol-phosphate synthase compare
RR42_RS31710 -0.9 -5.9 HxlR family transcriptional regulator compare
RR42_RS33495 -0.9 -6.8 L-phenylalanine:H+ symporter AroP (from data) compare
RR42_RS07245 -0.9 -1.5 hypothetical protein compare
RR42_RS26935 -0.9 -2.6 farnesyl-diphosphate farnesyltransferase compare
RR42_RS23370 -0.9 -0.9 flagellar motor switch protein FliN compare
RR42_RS30340 -0.9 -1.8 ABC transporter permease compare
RR42_RS10365 -0.9 -2.2 ABC transporter compare
RR42_RS31455 -0.9 -3.5 transcriptional regulator compare
RR42_RS06875 -0.9 -1.5 hypothetical protein compare
RR42_RS24760 -0.9 -0.9 hypothetical protein compare
RR42_RS19695 -0.8 -1.9 cytochrome C protein compare
RR42_RS13145 -0.8 -1.4 DNA-binding protein compare
RR42_RS12545 -0.8 -5.6 aminotransferase compare
RR42_RS32445 -0.8 -2.1 shikimate dehydrogenase compare
RR42_RS14775 -0.8 -4.6 peptidase M48 compare
RR42_RS16335 -0.8 -1.0 hypothetical protein compare
RR42_RS33575 -0.8 -1.6 hypothetical protein compare
RR42_RS23365 -0.8 -1.4 flagellar biosynthesis protein FliO compare
RR42_RS07605 -0.8 -3.0 poly-beta-hydroxybutyrate polymerase compare
RR42_RS21000 -0.8 -2.3 glycosyl transferase compare
RR42_RS21180 -0.8 -2.0 GNAT family acetyltransferase compare
RR42_RS15020 -0.8 -4.8 (2Fe-2S)-binding protein compare
RR42_RS34815 -0.8 -2.9 diguanylate cyclase compare
RR42_RS26275 -0.8 -2.6 CopG family transcriptional regulator compare
RR42_RS17055 -0.8 -4.0 LuxR family transcriptional regulator compare
RR42_RS21095 -0.8 -2.5 GntR family transcriptional regulator compare
RR42_RS10270 -0.8 -3.1 hypothetical protein compare
RR42_RS10225 -0.8 -2.6 nitronate monooxygenase compare
RR42_RS15785 -0.8 -3.9 glycosyl transferase family 28 compare
RR42_RS26895 -0.8 -3.8 3-methylcrotonyl-CoA carboxylase compare
RR42_RS13910 -0.8 -4.1 glutamate racemase compare
RR42_RS07900 -0.8 -2.6 allantoate amidohydrolase compare
RR42_RS02860 -0.8 -1.7 hypothetical protein compare
RR42_RS00790 -0.8 -4.7 chemotaxis protein CheY compare
RR42_RS08790 -0.8 -1.2 zinc-binding protein compare
RR42_RS33660 -0.8 -2.2 dihydrofolate reductase compare
RR42_RS34905 -0.8 -1.4 enoyl-CoA hydratase compare
RR42_RS17595 -0.8 -1.6 hypothetical protein compare
RR42_RS03650 -0.8 -3.0 hypothetical protein compare
RR42_RS34255 -0.8 -3.3 aldehyde dehydrogenase compare
RR42_RS29110 -0.8 -1.6 peroxiredoxin compare
RR42_RS14800 -0.8 -4.0 LysR family transcriptional regulator compare
RR42_RS04145 -0.8 -1.2 peptidase A24 compare
RR42_RS31290 -0.8 -1.4 XRE family transcriptional regulator compare
RR42_RS08085 -0.7 -1.6 hypothetical protein compare
RR42_RS30185 -0.7 -2.9 TetR family transcriptional regulator compare
RR42_RS17620 -0.7 -2.8 phosphatidylglycerophosphatase compare
RR42_RS00760 -0.7 -1.4 hypothetical protein compare
RR42_RS10310 -0.7 -1.1 NADPH:quinone reductase compare
RR42_RS00940 -0.7 -3.9 biotin synthase compare
RR42_RS01875 -0.7 -2.6 cytochrome C oxidase subunit II compare
RR42_RS27950 -0.7 -1.7 peptidylprolyl isomerase compare
RR42_RS27700 -0.7 -1.6 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source L-Phenylalanine in Cupriavidus basilensis FW507-4G11

For carbon source L-Phenylalanine across organisms