Experiment set2IT051 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

D-Galacturonic Acid monohydrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS20350 +2.2 12.0 gliding motility lipoprotein GldH compare
CA265_RS19380 +1.9 10.9 beta-carotene 15,15'-monooxygenase compare
CA265_RS19940 +1.8 14.5 hypothetical protein compare
CA265_RS18140 +1.7 9.4 DUF4271 domain-containing protein compare
CA265_RS09335 +1.6 9.1 DUF4442 domain-containing protein compare
CA265_RS23510 +1.5 7.2 energy transducer TonB compare
CA265_RS15200 +1.5 5.4 hypothetical protein compare
CA265_RS19945 +1.5 7.1 hypothetical protein compare
CA265_RS24355 +1.4 4.8 transcriptional regulator compare
CA265_RS15070 +1.4 7.1 hypothetical protein compare
CA265_RS01975 +1.4 3.7 cell division protein compare
CA265_RS19030 +1.4 7.8 hypothetical protein compare
CA265_RS18225 +1.4 6.5 DNA-binding response regulator compare
CA265_RS19140 +1.4 3.4 tRNA-Ile compare
CA265_RS24790 +1.3 9.1 peptidylprolyl isomerase compare
CA265_RS23515 +1.3 4.9 hypothetical protein compare
CA265_RS12665 +1.3 2.6 cold-shock protein compare
CA265_RS18125 +1.2 7.6 gliding motility protein GldL compare
CA265_RS02760 +1.2 2.8 hypothetical protein compare
CA265_RS01960 +1.2 1.4 division/cell wall cluster transcriptional repressor MraZ compare
CA265_RS18120 +1.2 9.2 gliding motility protein GldM compare
CA265_RS14825 +1.1 2.7 outer membrane protein assembly factor BamD compare
CA265_RS25275 +1.1 4.3 TIGR00159 family protein compare
CA265_RS09140 +1.1 6.3 MerR family transcriptional regulator compare
CA265_RS18115 +1.0 6.8 gliding motility protein GldN compare
CA265_RS04330 +1.0 5.2 transcriptional regulator compare
CA265_RS10740 +1.0 6.7 DNA-binding response regulator compare
CA265_RS21435 +1.0 4.9 hypothetical protein compare
CA265_RS23520 +1.0 6.9 phosphate ABC transporter substrate-binding protein compare
CA265_RS19345 +1.0 7.3 hypothetical protein compare
CA265_RS06875 +1.0 8.9 hydrophobe/amphiphile efflux-1 family RND transporter compare
CA265_RS15195 +1.0 5.9 hypothetical protein compare
CA265_RS08775 +1.0 1.6 hypothetical protein compare
CA265_RS06870 +1.0 8.0 efflux transporter periplasmic adaptor subunit compare
CA265_RS23305 +1.0 1.4 hypothetical protein compare
CA265_RS08085 +0.9 6.3 aminodeoxychorismate lyase compare
CA265_RS25030 +0.9 1.8 hypothetical protein compare
CA265_RS01165 +0.9 1.7 hypothetical protein compare
CA265_RS18755 +0.9 3.2 beta-ketoacyl-[acyl-carrier-protein] synthase II compare
CA265_RS21905 +0.9 4.7 hypothetical protein compare
CA265_RS23525 +0.9 7.1 hypothetical protein compare
CA265_RS01100 +0.9 5.4 transcriptional regulator compare
CA265_RS22450 +0.9 2.8 GntR family transcriptional regulator compare
CA265_RS23505 +0.9 2.3 biopolymer transporter ExbD compare
CA265_RS17555 +0.9 6.7 hypothetical protein compare
CA265_RS18130 +0.9 7.1 gliding motility-associated lipoprotein compare
CA265_RS22690 +0.9 6.0 hypothetical protein compare
CA265_RS23480 +0.9 3.8 hypothetical protein compare
CA265_RS07735 +0.9 2.1 transcriptional regulator compare
CA265_RS19980 +0.9 3.9 hypothetical protein compare
CA265_RS20640 +0.9 5.0 hypothetical protein compare
CA265_RS08445 +0.9 1.6 endonuclease compare
CA265_RS17565 +0.8 3.4 hypothetical protein compare
CA265_RS21565 +0.8 1.0 cold-shock protein compare
CA265_RS03295 +0.8 6.2 gliding motility-associated ABC transporter substrate-binding protein GldG compare
CA265_RS19640 +0.8 3.3 hypothetical protein compare
CA265_RS24995 +0.8 4.5 hypothetical protein compare
CA265_RS18770 +0.8 3.7 hypothetical protein compare
CA265_RS13225 +0.8 5.6 exonuclease compare
CA265_RS23635 +0.8 6.5 gliding motility lipoprotein GldJ compare
CA265_RS17885 +0.8 3.2 CopY family transcriptional repressor compare
CA265_RS06585 +0.8 5.9 hypothetical protein compare
CA265_RS23640 +0.8 5.6 hypothetical protein compare
CA265_RS02550 +0.8 1.9 tRNA-Phe compare
CA265_RS08825 +0.8 5.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
CA265_RS20315 +0.8 6.5 hypothetical protein compare
CA265_RS15085 +0.8 5.0 hypothetical protein compare
CA265_RS21060 +0.8 2.0 hypothetical protein compare
CA265_RS16995 +0.8 3.1 hypothetical protein compare
CA265_RS10745 +0.8 6.5 diguanylate cyclase compare
CA265_RS18855 +0.8 3.4 hypothetical protein compare
CA265_RS04640 +0.8 4.7 efflux transporter periplasmic adaptor subunit compare
CA265_RS20320 +0.8 6.6 hypothetical protein compare
CA265_RS21255 +0.8 5.5 hypothetical protein compare
CA265_RS23675 +0.7 2.1 hypothetical protein compare
CA265_RS15035 +0.7 2.9 prevent-host-death protein compare
CA265_RS18090 +0.7 6.2 gliding motility protein compare
CA265_RS17460 +0.7 3.9 RNA polymerase sigma-70 factor compare
CA265_RS08880 +0.7 5.8 chromate transporter compare
CA265_RS00040 +0.7 2.4 hypothetical protein compare
CA265_RS19645 +0.7 3.1 GNAT family N-acetyltransferase compare
CA265_RS20440 +0.7 3.2 hypothetical protein compare
CA265_RS16470 +0.7 4.6 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
CA265_RS19910 +0.7 3.7 GDSL family lipase compare
CA265_RS07535 +0.7 1.9 ATPase compare
CA265_RS19655 +0.7 2.6 carboxymuconolactone decarboxylase family protein compare
CA265_RS05620 +0.7 1.0 hypothetical protein compare
CA265_RS14845 +0.7 5.1 transcriptional regulator compare
CA265_RS01200 +0.7 3.6 hypothetical protein compare
CA265_RS05940 +0.7 2.0 hypothetical protein compare
CA265_RS20335 +0.7 6.0 SusC/RagA family TonB-linked outer membrane protein compare
CA265_RS13695 +0.7 4.3 hypothetical protein compare
CA265_RS04445 +0.7 2.2 hypothetical protein compare
CA265_RS25410 +0.7 4.8 gluconate kinase compare
CA265_RS23265 +0.7 1.6 iron-binding protein compare
CA265_RS17560 +0.7 4.3 peptidylprolyl isomerase compare
CA265_RS08820 +0.7 5.4 hypothetical protein compare
CA265_RS22800 +0.7 3.9 glycosyl transferase compare
CA265_RS13020 +0.7 3.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
CA265_RS23955 +0.6 3.5 glycosyl transferase family 4 compare
CA265_RS19605 +0.6 3.6 serine hydrolase compare
CA265_RS23140 +0.6 1.9 hypothetical protein compare
CA265_RS15215 +0.6 4.3 two-component sensor histidine kinase compare
CA265_RS22310 +0.6 2.2 superoxide dismutase compare
CA265_RS12330 +0.6 1.4 response regulator compare
CA265_RS02765 +0.6 1.9 cell division protein ZapA compare
CA265_RS21360 +0.6 1.8 hypothetical protein compare
CA265_RS19900 +0.6 2.9 pectin esterase compare
CA265_RS19455 +0.6 4.2 hypothetical protein compare
CA265_RS16940 +0.6 3.0 plasmid stabilization system protein compare
CA265_RS19690 +0.6 2.9 hypothetical protein compare
CA265_RS04335 +0.6 4.3 hypothetical protein compare
CA265_RS21865 +0.6 3.6 two-component sensor histidine kinase compare
CA265_RS15335 +0.6 3.5 NAD-dependent epimerase compare
CA265_RS18990 +0.6 5.6 cell surface protein SprA compare
CA265_RS22530 +0.6 3.2 RDD family protein compare
CA265_RS24980 +0.6 3.1 hypothetical protein compare
CA265_RS22165 +0.6 1.2 hypothetical protein compare
CA265_RS11670 +0.6 3.8 hypothetical protein compare
CA265_RS08895 +0.6 4.6 mannose-1-phosphate guanylyltransferase compare
CA265_RS15010 +0.6 2.7 hypothetical protein compare
CA265_RS20395 +0.6 1.4 hypothetical protein compare
CA265_RS23090 +0.6 2.3 transcriptional regulator compare
CA265_RS11800 +0.6 3.6 hypothetical protein compare
CA265_RS25255 +0.6 3.6 methyltransferase type 11 compare
CA265_RS03225 +0.6 3.5 hypothetical protein compare
CA265_RS23120 +0.6 2.3 hypothetical protein compare
CA265_RS22535 +0.6 1.6 hypothetical protein compare
CA265_RS04635 +0.6 4.8 CusA/CzcA family heavy metal efflux RND transporter compare
CA265_RS18780 +0.6 1.4 YicC family protein compare
CA265_RS23620 +0.6 3.5 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
CA265_RS14630 +0.6 3.7 AraC family transcriptional regulator compare
CA265_RS18790 +0.6 2.5 four helix bundle protein compare
CA265_RS20280 +0.6 2.0 DoxX family protein compare
CA265_RS07460 +0.6 2.8 deoxynucleoside kinase compare
CA265_RS23670 +0.6 2.7 cyclic nucleotide-binding protein compare
CA265_RS17115 +0.6 2.2 arsenate reductase compare
CA265_RS18945 +0.6 3.1 LacI family transcriptional regulator compare
CA265_RS16295 +0.6 3.9 LacI family transcriptional regulator compare
CA265_RS18145 +0.6 3.2 hypothetical protein compare
CA265_RS18845 +0.6 2.9 GNAT family N-acetyltransferase compare
CA265_RS24560 +0.6 4.0 DUF5007 domain-containing protein compare
CA265_RS02425 +0.6 2.4 GTP cyclohydrolase compare
CA265_RS17360 +0.6 3.1 hypothetical protein compare
CA265_RS04645 +0.6 3.9 cation transporter compare
CA265_RS24115 +0.6 3.6 hypothetical protein compare
CA265_RS06440 +0.6 0.9 hypothetical protein compare
CA265_RS09720 +0.6 3.8 transglycosylase compare
CA265_RS19050 +0.6 1.2 acylphosphatase compare
CA265_RS00055 +0.6 4.2 hypothetical protein compare
CA265_RS19535 +0.6 3.4 hypothetical protein compare
CA265_RS22595 +0.6 3.6 methyltransferase type 11 compare
CA265_RS17060 +0.6 4.1 adenylyl-sulfate kinase compare
CA265_RS20525 +0.6 0.9 hypothetical protein compare
CA265_RS20380 +0.6 3.7 hemagglutinin compare
CA265_RS01950 +0.5 1.6 hypothetical protein compare
CA265_RS03260 +0.5 3.6 multidrug ABC transporter ATP-binding protein compare
CA265_RS23755 +0.5 3.2 lauroyl acyltransferase compare
CA265_RS24195 +0.5 3.0 TetR family transcriptional regulator compare
CA265_RS17860 +0.5 3.2 hypothetical protein compare
CA265_RS21900 +0.5 4.2 two-component sensor histidine kinase compare
CA265_RS01205 +0.5 2.7 import component protein compare
CA265_RS16455 +0.5 3.3 AraC family transcriptional regulator compare
CA265_RS21225 +0.5 3.3 hypothetical protein compare
CA265_RS14595 +0.5 3.7 signal peptidase I compare
CA265_RS00270 +0.5 0.8 hypothetical protein compare
CA265_RS09035 +0.5 2.8 anti-anti-sigma factor compare
CA265_RS25440 +0.5 2.5 capsular biosynthesis protein compare
CA265_RS23980 +0.5 3.9 patatin compare
CA265_RS02045 +0.5 0.6 hypothetical protein compare
CA265_RS18465 +0.5 2.1 RNA-splicing ligase RtcB compare
CA265_RS01035 +0.5 3.1 hypothetical protein compare
CA265_RS21620 +0.5 3.3 hybrid sensor histidine kinase/response regulator compare
CA265_RS12800 +0.5 2.5 NAD(P)H-dependent oxidoreductase compare
CA265_RS15890 +0.5 2.4 DNA-binding protein compare
CA265_RS00420 +0.5 1.7 FUSC family protein compare
CA265_RS21130 +0.5 2.6 Co2+/Mg2+ efflux protein ApaG compare
CA265_RS20565 +0.5 2.4 metallophosphoesterase compare
CA265_RS17120 +0.5 3.7 hypothetical protein compare
CA265_RS17420 +0.5 2.3 glyoxalase compare
CA265_RS15640 +0.5 4.1 sugar kinase compare
CA265_RS09690 +0.5 2.0 hypothetical protein compare
CA265_RS08500 +0.5 3.8 endonuclease compare
CA265_RS08745 +0.5 2.8 STAS/SEC14 domain-containing protein compare
CA265_RS06180 +0.5 1.7 hypothetical protein compare
CA265_RS16005 +0.5 3.0 hypothetical protein compare
CA265_RS21000 +0.5 2.5 ribosome silencing factor compare
CA265_RS20205 +0.5 2.7 very short patch repair endonuclease compare
CA265_RS23435 +0.5 3.2 hypothetical protein compare
CA265_RS02245 +0.5 1.9 hypothetical protein compare
CA265_RS19445 +0.5 2.7 hypothetical protein compare
CA265_RS22460 +0.5 2.0 ABC transporter ATP-binding protein compare
CA265_RS17035 +0.5 2.8 hypothetical protein compare
CA265_RS19935 +0.5 2.5 hypothetical protein compare
CA265_RS00400 +0.5 3.1 hypothetical protein compare
CA265_RS13625 +0.5 2.4 hypothetical protein compare
CA265_RS21445 +0.5 2.3 exodeoxyribonuclease III compare
CA265_RS21080 +0.5 1.3 hypothetical protein compare
CA265_RS20330 +0.5 4.0 SusD/RagB family nutrient-binding outer membrane lipoprotein compare
CA265_RS15905 +0.5 2.4 RNA polymerase sigma factor compare


Specific Phenotypes

For 17 genes in this experiment

For carbon source D-Galacturonic Acid monohydrate in Pedobacter sp. GW460-11-11-14-LB5

For carbon source D-Galacturonic Acid monohydrate across organisms