Experiment set2IT051 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Leucine carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS01385 -6.9 -4.8 5,10-methylenetetrahydrofolate reductase compare
RR42_RS18305 -6.5 -4.5 anthranilate phosphoribosyltransferase compare
RR42_RS05860 -6.5 -4.5 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS06485 -6.4 -4.4 chorismate synthase compare
RR42_RS12175 -6.2 -7.4 malate synthase compare
RR42_RS14365 -6.1 -4.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS16255 -6.0 -7.1 sulfate adenylyltransferase compare
RR42_RS26900 -5.9 -4.0 enoyl-CoA hydratase compare
RR42_RS26895 -5.8 -7.9 3-methylcrotonyl-CoA carboxylase compare
RR42_RS07425 -5.5 -7.5 IclR family transcriptional regulator compare
RR42_RS11795 -5.2 -4.4 PEP synthetase regulatory protein compare
RR42_RS16245 -5.1 -5.0 uroporphyrin-III methyltransferase compare
RR42_RS18295 -5.1 -10.8 anthranilate synthase component I compare
RR42_RS19005 -5.0 -6.9 3-dehydroquinate synthase compare
RR42_RS26905 -4.9 -7.2 methylcrotonoyl-CoA carboxylase compare
RR42_RS07555 -4.9 -3.3 potassium transporter Kup compare
RR42_RS30655 -4.6 -8.2 LysR family transcriptional regulator compare
RR42_RS16250 -4.6 -8.5 sulfate adenylyltransferase compare
RR42_RS16265 -4.6 -5.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS01160 -4.6 -8.9 homoserine O-acetyltransferase compare
RR42_RS04475 -4.5 -9.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS03095 -4.4 -3.0 succinyl-CoA synthetase subunit beta compare
RR42_RS18300 -4.4 -5.8 anthranilate synthase subunit II compare
RR42_RS00955 -4.3 -6.6 hydroxymethylglutaryl-CoA lyase compare
RR42_RS17645 -4.2 -8.5 shikimate dehydrogenase compare
RR42_RS33260 -4.1 -9.8 multidrug MFS transporter compare
RR42_RS16275 -4.1 -4.8 membrane protein compare
RR42_RS33250 -4.1 -8.3 tyrosine protein kinase compare
RR42_RS14320 -4.0 -6.0 O-succinylhomoserine sulfhydrylase compare
RR42_RS18850 -4.0 -4.6 preprotein translocase subunit TatC compare
RR42_RS19010 -3.9 -7.2 shikimate kinase compare
RR42_RS16270 -3.8 -9.1 sulfite reductase compare
RR42_RS30660 -3.8 -8.5 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS20205 -3.7 -3.6 chromosome partitioning protein compare
RR42_RS18855 -3.5 -3.4 preprotein translocase compare
RR42_RS04535 -3.4 -6.8 cysteine synthase compare
RR42_RS33255 -3.3 -2.4 protein-tyrosine phosphatase compare
RR42_RS33240 -3.3 -15.6 GDP-L-fucose synthase compare
RR42_RS04460 -3.3 -5.8 chorismate mutase compare
RR42_RS01845 -3.2 -1.9 glycerol-3-phosphate dehydrogenase compare
RR42_RS04700 -3.2 -1.9 ribonuclease G compare
RR42_RS00875 -3.2 -13.0 isocitrate dehydrogenase compare
RR42_RS01290 -3.1 -4.9 thiamine biosynthesis protein ThiC compare
RR42_RS14360 -3.0 -1.6 tryptophan synthase subunit alpha compare
RR42_RS12040 -3.0 -14.2 MFS transporter compare
RR42_RS33235 -3.0 -8.4 GDP-mannose 4,6-dehydratase compare
RR42_RS18140 -2.9 -2.4 MarR family transcriptional regulator compare
RR42_RS16965 -2.9 -7.3 ABC transporter compare
RR42_RS16280 -2.9 -5.6 transcriptional regulator compare
RR42_RS33245 -2.9 -9.0 mannose-1-phosphate guanyltransferase compare
RR42_RS13880 -2.8 -14.5 AMP-dependent synthetase compare
RR42_RS26915 -2.6 -6.0 AMP-binding protein compare
RR42_RS05955 -2.6 -1.8 hypothetical protein compare
RR42_RS16240 -2.6 -1.4 cobalamin biosynthesis protein CbiX compare
RR42_RS34245 -2.6 -11.3 branched-chain alpha-ketoacid:ferredoxin oxidoreductase, fused (from data) conserved
RR42_RS01720 -2.4 -2.3 membrane protein compare
RR42_RS18815 -2.4 -4.6 cytochrome C compare
RR42_RS00940 -2.3 -8.8 biotin synthase compare
RR42_RS06095 -2.3 -4.8 hypothetical protein compare
RR42_RS21720 -2.3 -3.0 acetoin catabolism protein X compare
RR42_RS20195 -2.2 -1.6 ATPase F0F1 compare
RR42_RS12550 -2.2 -5.8 hypothetical protein compare
RR42_RS12925 -2.2 -3.0 ATPase compare
RR42_RS33210 -2.2 -5.4 teichoic acid biosynthesis protein compare
RR42_RS18820 -2.2 -7.3 cytochrome B compare
RR42_RS06555 -2.1 -5.6 3-oxoacid CoA-transferase (EC 2.8.3.5), subunit A (from data) compare
RR42_RS31505 -2.1 -2.6 hypothetical protein compare
RR42_RS16970 -2.1 -10.9 ABC transporter ATP-binding protein compare
RR42_RS16980 -2.0 -12.7 branched-chain amino acid ABC transporter substrate-binding protein compare
RR42_RS07605 -2.0 -6.4 poly-beta-hydroxybutyrate polymerase compare
RR42_RS19090 -1.9 -2.4 cytochrome C compare
RR42_RS01380 -1.9 -2.5 membrane protein compare
RR42_RS03080 -1.9 -3.2 recombinase RecA compare
RR42_RS21820 -1.9 -4.0 GntR family transcriptional regulator compare
RR42_RS33355 -1.9 -4.3 membrane protein compare
RR42_RS07360 -1.8 -4.4 ATPase compare
RR42_RS19085 -1.8 -2.2 cytochrome C biogenesis protein ResB compare
RR42_RS24605 -1.8 -5.8 TetR family transcriptional regulator compare
RR42_RS13800 -1.8 -7.4 formyltetrahydrofolate deformylase compare
RR42_RS02705 -1.8 -2.5 Holliday junction DNA helicase RuvA compare
RR42_RS15470 -1.7 -1.7 biopolymer transporter ExbD compare
RR42_RS08575 -1.7 -1.5 tail protein compare
RR42_RS06875 -1.7 -2.7 hypothetical protein compare
RR42_RS01630 -1.7 -1.3 branched-chain amino acid ABC transporter ATP-binding protein compare
RR42_RS01920 -1.7 -2.6 protoheme IX farnesyltransferase compare
RR42_RS16975 -1.7 -6.0 ABC transporter permease compare
RR42_RS19065 -1.7 -7.7 transcriptional regulator compare
RR42_RS16960 -1.6 -5.9 ABC transporter ATP-binding protein compare
RR42_RS02045 -1.6 -10.5 GTPase compare
RR42_RS17050 -1.6 -4.7 phosphoribosylglycinamide formyltransferase compare
RR42_RS18825 -1.6 -2.1 ubiquinol-cytochrome C reductase compare
RR42_RS12185 -1.5 -1.7 LysR family transcriptional regulator compare
RR42_RS05810 -1.5 -2.3 RNA polymerase sigma factor compare
RR42_RS34255 -1.5 -5.0 aldehyde dehydrogenase compare
RR42_RS15845 -1.5 -2.5 biotin transporter BioY compare
RR42_RS21040 -1.5 -1.2 hypothetical protein compare
RR42_RS34395 -1.5 -2.0 hypothetical protein compare
RR42_RS21125 -1.5 -2.8 membrane protein compare
RR42_RS18930 -1.5 -2.8 BolA family transcriptional regulator compare
RR42_RS24040 -1.5 -3.7 hypothetical protein compare
RR42_RS17060 -1.4 -10.5 histidine kinase compare
RR42_RS04880 -1.4 -6.9 coproporphyrinogen III oxidase compare
RR42_RS02775 -1.4 -2.0 molecular chaperone SurA compare
RR42_RS16260 -1.4 -0.9 phosphoadenosine phosphosulfate reductase compare
RR42_RS27470 -1.4 -1.3 peroxiredoxin OsmC compare
RR42_RS29865 -1.4 -2.8 hypothetical protein compare
RR42_RS07620 -1.4 -3.8 polyhydroxyalkanoate synthesis repressor PhaR compare
RR42_RS01915 -1.4 -4.7 cytochrome C oxidase subunit I compare
RR42_RS21220 -1.4 -2.3 iron transporter FeoB compare
RR42_RS04895 -1.4 -6.8 serine/threonine protein phosphatase compare
RR42_RS24930 -1.4 -1.0 AraC family transcriptional regulator compare
RR42_RS01885 -1.3 -4.1 cytochrome C oxidase assembly protein compare
RR42_RS32785 -1.3 -2.0 chemotaxis protein compare
RR42_RS17590 -1.3 -2.1 16S rRNA methyltransferase compare
RR42_RS26590 -1.3 -1.8 hypothetical protein compare
RR42_RS30640 -1.3 -5.3 DNA mismatch repair protein MutT compare
RR42_RS22495 -1.2 -3.4 hypothetical protein compare
RR42_RS17720 -1.2 -1.5 sugar kinase compare
RR42_RS17390 -1.2 -4.5 ATP-dependent DNA helicase RecG compare
RR42_RS19860 -1.2 -1.1 tartronate semialdehyde reductase compare
RR42_RS00925 -1.2 -4.4 adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA compare
RR42_RS13180 -1.2 -6.5 3'-5' exonuclease compare
RR42_RS12305 -1.2 -1.3 hypothetical protein compare
RR42_RS20310 -1.2 -1.0 copper-binding protein compare
RR42_RS18270 -1.2 -3.6 murein transglycosylase compare
RR42_RS02310 -1.2 -2.9 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
RR42_RS20210 -1.2 -3.6 16S rRNA methyltransferase compare
RR42_RS24690 -1.2 -1.3 hypothetical protein compare
RR42_RS22275 -1.2 -1.1 hypothetical protein compare
RR42_RS22590 -1.2 -1.0 organic hydroperoxide resistance protein compare
RR42_RS13905 -1.2 -3.2 fumarate hydratase compare
RR42_RS00930 -1.2 -5.2 8-amino-7-oxononanoate synthase compare
RR42_RS11790 -1.1 -7.0 phosphoenolpyruvate synthase compare
RR42_RS06250 -1.1 -1.6 dihydrodipicolinate synthase compare
RR42_RS19695 -1.1 -2.3 cytochrome C protein compare
RR42_RS04015 -1.1 -1.4 RNA polymerase sigma factor compare
RR42_RS01780 -1.1 -4.6 glutathione synthetase compare
RR42_RS34250 -1.1 -4.7 LysR family transcriptional regulator compare
RR42_RS27625 -1.1 -2.5 TetR family transcriptional regulator compare
RR42_RS19410 -1.1 -3.5 GntR family transcriptional regulator compare
RR42_RS12050 -1.1 -5.6 DNA polymerase compare
RR42_RS13910 -1.1 -4.7 glutamate racemase compare
RR42_RS33575 -1.1 -2.1 hypothetical protein compare
RR42_RS32090 -1.1 -2.2 hypothetical protein compare
RR42_RS29785 -1.1 -3.1 hypothetical protein compare
RR42_RS18670 -1.1 -3.9 metal-dependent hydrolase compare
RR42_RS04470 -1.0 -2.4 prephenate dehydrogenase compare
RR42_RS00380 -1.0 -5.1 GntR family transcriptional regulator compare
RR42_RS31385 -1.0 -4.9 GntR family transcriptional regulator compare
RR42_RS34650 -1.0 -4.3 LacI family transcriptional regulator compare
RR42_RS10415 -1.0 -1.2 hypothetical protein compare
RR42_RS23735 -1.0 -5.4 phenylacetyl-CoA 1,2-epoxidase, structural subunit (EC 1.14.13.149) (from data) compare
RR42_RS12015 -1.0 -2.0 dihydrolipoamide acyltransferase compare
RR42_RS27700 -1.0 -1.9 hypothetical protein compare
RR42_RS07565 -1.0 -5.4 transcription accessory protein compare
RR42_RS34940 -1.0 -1.8 bb3-type cytochrome oxidase subunit IV compare
RR42_RS18485 -1.0 -1.0 glutaredoxin compare
RR42_RS02140 -1.0 -1.4 hypothetical protein compare
RR42_RS21665 -1.0 -4.7 cobalt transporter compare
RR42_RS17055 -1.0 -4.7 LuxR family transcriptional regulator compare
RR42_RS28885 -1.0 -3.3 membrane protein compare
RR42_RS17505 -1.0 -6.6 NAD synthetase compare
RR42_RS01775 -0.9 -3.9 glutamate--cysteine ligase compare
RR42_RS32520 -0.9 -2.1 cytochrome C compare
RR42_RS23725 -0.9 -4.8 phenylacetate-CoA oxygenase compare
RR42_RS27095 -0.9 -1.5 hypothetical protein compare
RR42_RS22490 -0.9 -3.8 IclR family transcriptional regulator compare
RR42_RS29095 -0.9 -2.1 XRE family transcriptional regulator compare
RR42_RS31575 -0.9 -2.5 GntR family transcriptional regulator compare
RR42_RS28955 -0.9 -3.4 transcriptional regulator compare
RR42_RS15090 -0.9 -3.4 DNA helicase compare
RR42_RS17105 -0.9 -5.4 Clp protease ClpX compare
RR42_RS12545 -0.9 -6.2 aminotransferase compare
RR42_RS01875 -0.9 -4.0 cytochrome C oxidase subunit II compare
RR42_RS15475 -0.9 -4.6 protein tolQ compare
RR42_RS12615 -0.9 -1.9 LexA family transcriptional regulator compare
RR42_RS07440 -0.9 -2.2 hypothetical protein compare
RR42_RS17685 -0.9 -4.4 alkyl hydroperoxide reductase compare
RR42_RS00250 -0.9 -3.9 GntR family transcriptional regulator compare
RR42_RS14055 -0.9 -2.3 elongation factor 4 compare
RR42_RS13040 -0.9 -3.3 iron transporter compare
RR42_RS31530 -0.9 -2.0 histidine kinase compare
RR42_RS27530 -0.9 -2.5 hypothetical protein compare
RR42_RS19045 -0.9 -0.9 frataxin compare
RR42_RS16310 -0.9 -1.0 hypothetical protein compare
RR42_RS26200 -0.9 -1.5 hypothetical protein compare
RR42_RS05500 -0.9 -1.0 preprotein translocase subunit SecG compare
RR42_RS00715 -0.9 -1.5 ferritin compare
RR42_RS18430 -0.9 -1.8 prevent-host-death protein compare
RR42_RS01820 -0.9 -3.0 peptidase S41 compare
RR42_RS14915 -0.9 -1.7 hypothetical protein compare
RR42_RS00285 -0.8 -2.6 thiamine biosynthesis protein ThiS compare
RR42_RS02250 -0.8 -2.1 GntR family transcriptional regulator compare
RR42_RS12180 -0.8 -1.6 haloacid dehalogenase compare
RR42_RS15445 -0.8 -4.3 7-cyano-7-deazaguanine synthase compare
RR42_RS16525 -0.8 -2.1 anti-sigma factor compare
RR42_RS22640 -0.8 -3.0 CAAX amino protease compare
RR42_RS34360 -0.8 -2.4 transposase compare
RR42_RS25715 -0.8 -3.5 hypothetical protein compare
RR42_RS16510 -0.8 -1.6 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source L-Leucine in Cupriavidus basilensis FW507-4G11

For carbon source L-Leucine across organisms