Experiment set2IT051 for Ralstonia sp. UNC404CL21Col

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS13250 -7.9 -5.4 phosphoserine phosphatase SerB compare
ABZR87_RS14505 -7.2 -5.0 phosphoribosylanthranilate isomerase compare
ABZR87_RS02595 -6.9 -12.3 shikimate kinase compare
ABZR87_RS14500 -6.5 -13.2 tryptophan synthase subunit beta compare
ABZR87_RS14535 -6.5 -4.5 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS07360 -6.2 -16.0 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS02565 -6.1 -6.0 glutamate synthase subunit beta compare
ABZR87_RS02160 -6.0 -8.2 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS02570 -5.9 -25.1 glutamate synthase-related protein compare
ABZR87_RS09450 -5.9 -9.8 prephenate dehydratase compare
ABZR87_RS13790 -5.8 -12.9 chorismate synthase compare
ABZR87_RS08630 -5.7 -13.7 dihydroorotase compare
ABZR87_RS14540 -5.7 -8.0 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS02145 -5.7 -3.9 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS00210 -5.7 -7.8 nitrite/sulfite reductase compare
ABZR87_RS05200 -5.6 -20.6 homoserine O-acetyltransferase compare
ABZR87_RS08625 -5.5 -3.8 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS09465 -5.5 -9.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS14950 -5.4 -3.7 acetolactate synthase small subunit compare
ABZR87_RS09445 -5.4 -16.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS14530 -5.4 -9.7 3-isopropylmalate dehydrogenase compare
ABZR87_RS00190 -5.4 -12.5 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS00195 -5.2 -5.6 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS00200 -5.1 -7.0 phosphoadenylyl-sulfate reductase compare
ABZR87_RS00185 -5.1 -3.5 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS07380 -5.0 -16.9 FAD/FMN-binding oxidoreductase compare
ABZR87_RS16170 -5.0 -8.3 argininosuccinate lyase compare
ABZR87_RS01110 -4.9 -13.0 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS14490 -4.9 -12.3 tryptophan synthase subunit alpha compare
ABZR87_RS09935 -4.9 -4.8 amino acid aminotransferase compare
ABZR87_RS00835 -4.8 -6.6 argininosuccinate synthase compare
ABZR87_RS22970 -4.8 -12.6 cystathionine gamma-synthase family protein compare
ABZR87_RS02155 -4.8 -10.7 anthranilate phosphoribosyltransferase compare
ABZR87_RS02590 -4.7 -12.1 3-dehydroquinate synthase compare
ABZR87_RS05170 -4.7 -3.2 acetylglutamate kinase compare
ABZR87_RS02140 -4.7 -19.7 anthranilate synthase component I compare
ABZR87_RS07050 -4.6 -3.1 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS16140 -4.5 -18.8 phosphoenolpyruvate carboxylase compare
ABZR87_RS04865 -4.5 -6.2 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS02640 -4.4 -16.5 diaminopimelate decarboxylase compare
ABZR87_RS13300 -4.2 -12.4 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS11440 -4.2 -8.9 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS06770 -4.1 -10.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS12790 -3.8 -6.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS14955 -3.6 -3.5 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS00220 -3.6 -10.1 CysB family HTH-type transcriptional regulator compare
ABZR87_RS22915 -3.5 -12.5 glucose-6-phosphate dehydrogenase compare
ABZR87_RS01810 -3.5 -5.4 glutamate 5-kinase compare
ABZR87_RS07665 -3.5 -12.8 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS00285 -3.5 -2.4 acetylornithine transaminase compare
ABZR87_RS22920 -3.4 -7.8 phosphogluconate dehydratase compare
ABZR87_RS05590 -3.4 -4.7 orotate phosphoribosyltransferase compare
ABZR87_RS13290 -3.2 -6.9 3-ketoacyl-ACP reductase compare
ABZR87_RS23225 -3.1 -7.8 sugar ABC transporter permease compare
ABZR87_RS05100 -3.1 -11.7 RNA polymerase-binding protein DksA compare
ABZR87_RS13475 -3.1 -10.9 PAS domain S-box protein compare
ABZR87_RS00435 -2.9 -10.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS12785 -2.9 -9.5 endopeptidase La compare
ABZR87_RS01225 -2.8 -5.5 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS12795 -2.8 -6.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS09515 -2.7 -3.2 cysteine synthase CysM compare
ABZR87_RS01645 -2.7 -4.6 type II 3-dehydroquinate dehydratase compare
ABZR87_RS01605 -2.7 -11.4 shikimate dehydrogenase compare
ABZR87_RS00205 -2.7 -2.6 DUF934 domain-containing protein compare
ABZR87_RS07320 -2.6 -9.6 gluconokinase compare
ABZR87_RS23220 -2.6 -8.1 xylose ABC transporter ATP-binding protein compare
ABZR87_RS11815 -2.5 -9.6 [protein-PII] uridylyltransferase compare
ABZR87_RS10240 -2.5 -3.3 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS10610 -2.4 -2.5 inositol monophosphatase family protein compare
ABZR87_RS16180 -2.4 -3.6 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS04785 -2.3 -10.9 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS23215 -2.3 -6.8 D-xylose ABC transporter substrate-binding protein compare
ABZR87_RS10785 -2.3 -6.9 exodeoxyribonuclease V subunit beta compare
ABZR87_RS15440 -2.1 -3.7 ribonuclease G compare
ABZR87_RS16185 -2.0 -2.7 dCTP deaminase compare
ABZR87_RS00875 -1.9 -4.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS07705 -1.9 -4.3 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS02480 -1.9 -2.8 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS13285 -1.9 -8.8 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS11065 -1.8 -5.9 nitrogen regulation protein NR(II) compare
ABZR87_RS06495 -1.8 -3.1 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS01690 -1.8 -1.6 collagen-like triple helix repeat-containing protein compare
ABZR87_RS00215 -1.8 -4.0 sulfite exporter TauE/SafE family protein compare
ABZR87_RS09460 -1.7 -6.7 prephenate dehydrogenase compare
ABZR87_RS23230 -1.7 -8.8 NAD(P)-dependent oxidoreductase compare
ABZR87_RS02575 -1.7 -5.8 transposase compare
ABZR87_RS10820 -1.6 -8.6 LysR substrate-binding domain-containing protein compare
ABZR87_RS09635 -1.6 -2.0 ribosome small subunit-dependent GTPase A compare
ABZR87_RS08695 -1.6 -9.6 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS04125 -1.5 -5.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS14115 -1.5 -8.0 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS09895 -1.5 -1.5 DUF1841 family protein compare
ABZR87_RS06645 -1.5 -2.0 TlpA disulfide reductase family protein compare
ABZR87_RS11760 -1.5 -1.6 membrane protein compare
ABZR87_RS23210 -1.4 -8.0 carbohydrate porin compare
ABZR87_RS07620 -1.4 -2.9 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS10780 -1.4 -4.2 PD-(D/E)XK nuclease family protein compare
ABZR87_RS14510 -1.4 -5.3 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS05350 -1.4 -3.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS22910 -1.4 -1.8 6-phosphogluconolactonase compare
ABZR87_RS10120 -1.4 -1.8 YceD family protein compare
ABZR87_RS19095 -1.3 -3.6 gluconate:H+ symporter compare
ABZR87_RS10620 -1.3 -2.0 serine O-acetyltransferase compare
ABZR87_RS08640 -1.3 -5.7 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS06715 -1.3 -2.4 PTS sugar transporter subunit IIA compare
ABZR87_RS10195 -1.2 -3.9 signal peptidase I compare
ABZR87_RS11125 -1.2 -5.4 cell division protein ZapE compare
ABZR87_RS05010 -1.2 -3.4 rod shape-determining protein RodA compare
ABZR87_RS14495 -1.2 -3.2 site-specific DNA-methyltransferase compare
ABZR87_RS15010 -1.2 -2.8 DUF924 family protein compare
ABZR87_RS22690 -1.1 -3.3 XRE family transcriptional regulator compare
ABZR87_RS06705 -1.1 -8.3 glutamate--cysteine ligase compare
ABZR87_RS10400 -1.1 -2.2 hypothetical protein compare
ABZR87_RS16735 -1.1 -9.4 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS02485 -1.1 -1.1 MarC family protein compare
ABZR87_RS08700 -1.1 -6.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS05015 -1.1 -3.9 penicillin-binding protein 2 compare
ABZR87_RS10170 -1.1 -5.2 RseA family anti-sigma factor compare
ABZR87_RS01685 -1.0 -4.4 histone H1-like DNA-binding protein compare
ABZR87_RS16125 -1.0 -6.0 heme biosynthesis protein HemY compare
ABZR87_RS19485 -1.0 -2.2 H-NS histone family protein compare
ABZR87_RS15275 -1.0 -2.1 hypothetical protein compare
ABZR87_RS05065 -1.0 -3.2 tyrosine recombinase XerC compare
ABZR87_RS07020 -1.0 -7.5 dynamin-like GTPase family protein compare
ABZR87_RS11375 -1.0 -5.9 inorganic phosphate transporter compare
ABZR87_RS16960 -1.0 -3.5 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS11015 -1.0 -4.8 amino-acid N-acetyltransferase compare
ABZR87_RS11925 -0.9 -6.6 phosphoenolpyruvate synthase compare
ABZR87_RS14890 -0.9 -1.4 preprotein translocase subunit SecG compare
ABZR87_RS23095 -0.9 -1.1 MarR family transcriptional regulator compare
ABZR87_RS05085 -0.9 -7.4 lactonase family protein compare
ABZR87_RS07625 -0.9 -1.6 Holliday junction branch migration protein RuvA compare
ABZR87_RS01425 -0.9 -2.5 ferric iron uptake transcriptional regulator compare
ABZR87_RS05145 -0.9 -1.5 copper chaperone PCu(A)C compare
ABZR87_RS10800 -0.9 -3.0 YbaB/EbfC family nucleoid-associated protein compare
ABZR87_RS08645 -0.9 -1.1 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS15250 -0.9 -5.5 PP2C family serine/threonine-protein phosphatase compare
ABZR87_RS03780 -0.9 -1.4 thiosulfate oxidation carrier protein SoxY compare
ABZR87_RS08655 -0.9 -3.7 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS11435 -0.9 -2.5 Mth938-like domain-containing protein compare
ABZR87_RS07005 -0.9 -1.5 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS19105 -0.9 -3.1 amidohydrolase family protein compare
ABZR87_RS07035 -0.9 -5.2 RNase adapter RapZ compare
ABZR87_RS11070 -0.9 -4.8 nitrogen regulation protein NR(I) compare
ABZR87_RS01420 -0.9 -1.0 outer membrane protein assembly factor BamE compare
ABZR87_RS16730 -0.9 -4.3 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS10085 -0.9 -1.0 Rne/Rng family ribonuclease compare
ABZR87_RS11010 -0.9 -1.6 oxidative damage protection protein compare
ABZR87_RS01800 -0.9 -4.4 RNA pyrophosphohydrolase compare
ABZR87_RS01430 -0.9 -7.1 LysR family transcriptional regulator compare
ABZR87_RS01035 -0.8 -3.5 histidine utilization repressor compare
ABZR87_RS07675 -0.8 -5.0 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS12295 -0.8 -1.9 muconate/chloromuconate family cycloisomerase compare
ABZR87_RS12735 -0.8 -5.8 winged helix DNA-binding protein compare
ABZR87_RS15405 -0.8 -3.0 YebC/PmpR family DNA-binding transcriptional regulator compare
ABZR87_RS22520 -0.8 -1.5 ABATE domain-containing protein compare
ABZR87_RS09615 -0.8 -1.8 50S ribosomal protein L19 compare
ABZR87_RS05580 -0.8 -2.3 diaminopimelate epimerase compare
ABZR87_RS10565 -0.8 -2.4 cupin domain-containing protein compare
ABZR87_RS14375 -0.8 -1.9 fumarate hydratase compare
ABZR87_RS01980 -0.8 -1.4 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS04105 -0.8 -2.5 ATP synthase subunit I compare
ABZR87_RS08660 -0.8 -3.6 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS12800 -0.8 -3.7 trigger factor compare
ABZR87_RS16760 -0.8 -2.6 GGDEF domain-containing protein compare
ABZR87_RS11770 -0.8 -3.5 succinyldiaminopimelate transaminase compare
ABZR87_RS00360 -0.7 -1.3 acyl-CoA desaturase compare
ABZR87_RS07635 -0.7 -1.2 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS05965 -0.7 -1.7 hemerythrin domain-containing protein compare
ABZR87_RS09180 -0.7 -3.0 thioredoxin domain-containing protein compare
ABZR87_RS18145 -0.7 -2.1 lytic transglycosylase domain-containing protein compare
ABZR87_RS21470 -0.7 -1.8 P-II family nitrogen regulator compare
ABZR87_RS05205 -0.7 -2.8 methionine biosynthesis protein MetW compare
ABZR87_RS08980 -0.7 -2.5 cell envelope integrity protein TolA compare
ABZR87_RS12150 -0.7 -2.0 6-carboxytetrahydropterin synthase QueD compare
ABZR87_RS21990 -0.7 -3.2 hypothetical protein compare
ABZR87_RS08070 -0.7 -1.6 pyruvate kinase compare
ABZR87_RS22585 -0.7 -1.6 methyl-accepting chemotaxis protein compare
ABZR87_RS20690 -0.7 -1.5 recombinase-like helix-turn-helix domain-containing protein compare
ABZR87_RS11245 -0.7 -2.8 translational GTPase TypA compare
ABZR87_RS02850 -0.7 -1.5 elongation factor Tu compare
ABZR87_RS07700 -0.7 -1.4 peptidylprolyl isomerase compare
ABZR87_RS13175 -0.7 -1.5 tRNA-Leu compare
ABZR87_RS04190 -0.7 -1.5 hypothetical protein compare
ABZR87_RS07730 -0.7 -1.6 lysophospholipid acyltransferase family protein compare
ABZR87_RS09500 -0.7 -2.5 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
ABZR87_RS22485 -0.7 -4.2 FAD-dependent oxidoreductase compare
ABZR87_RS22330 -0.7 -1.2 hypothetical protein compare
ABZR87_RS08750 -0.7 -2.3 lipopolysaccharide heptosyltransferase I compare
ABZR87_RS15810 -0.7 -3.0 hypothetical protein compare
ABZR87_RS16250 -0.7 -1.9 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS07965 -0.7 -2.8 recombinase RecA compare
ABZR87_RS15225 -0.6 -3.3 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABZR87_RS05060 -0.6 -2.2 DUF484 family protein compare
ABZR87_RS04595 -0.6 -1.3 hypothetical protein compare
ABZR87_RS00970 -0.6 -1.3 molecular chaperone DnaJ compare
ABZR87_RS07710 -0.6 -3.4 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
ABZR87_RS01675 -0.6 -1.2 carbohydrate kinase family protein compare
ABZR87_RS12970 -0.6 -2.2 putative holin compare
ABZR87_RS21700 -0.6 -1.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in carbon source experiments

For carbon source D-Glucose across organisms