Experiment set2IT050 for Sinorhizobium meliloti 1021

Compare to:

LB with Sodium nitrite 20 mM

200 most important genes:

  gene name fitness t score description  
SMc04085 -5.4 -6.5 hypothetical protein compare
SMc02850 -5.0 -6.9 DNA polymerase I compare
SMc04121 -5.0 -2.4 uracil phosphoribosyltransferase compare
SMc03763 -4.4 -5.2 cytosine-specific methyltransferase compare
SMc01153 -3.3 -2.1 enoyl-CoA hydratase compare
SMc03967 -3.0 -2.8 Holliday junction resolvase compare
SMc01578 -3.0 -10.8 aspartate aminotransferase compare
SMc04005 -2.9 -12.7 pyruvate kinase compare
SMc01881 -2.9 -4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc00334 -2.6 -2.0 cytidylate kinase compare
SMc00761 -2.4 -13.2 oxidoreductase compare
SMc00010 -2.3 -3.5 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc03978 -2.3 -5.7 transketolase compare
SMc00963 -2.3 -5.0 hypothetical protein compare
SMc02504 -2.2 -6.7 transcriptional regulator compare
SMc04385 -2.2 -6.4 L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) compare
SMc01880 -2.1 -3.7 pantoate--beta-alanine ligase compare
SMc01206 -2.0 -3.3 queuine tRNA-ribosyltransferase compare
SMc01147 -2.0 -4.5 coproporphyrinogen III oxidase compare
SMc02713 -2.0 -2.5 RNA polymerase sigma-E factor (sigma-24) protein compare
SMc02234 -1.9 -4.0 hypothetical protein compare
SMc00557 -1.9 -7.0 alanine racemase compare
SMc01183 -1.9 -2.6 LexA repressor compare
SMc04296 -1.8 -1.7 cell division protein FtsZ compare
SMc02858 -1.8 -1.2 chaperone protein DnaJ compare
SMc02833 -1.8 -2.0 penicillin-insensitive murein endopeptidase compare
SMc03242 -1.7 -4.1 GTP-binding protein compare
SMc00053 -1.7 -1.5 monovalent cation/H+ antiporter subunit C compare
SMc01845 -1.7 -2.9 transglycosylase transmembrane protein compare
SMc02503 -1.7 -7.2 hypothetical protein compare
SMc02510 -1.7 -1.2 ferric uptake regulation protein compare
SMc00302 -1.6 -4.3 hypothetical protein compare
SMc02232 -1.6 -3.7 hypothetical protein compare
SMc00602 -1.5 -5.9 excinuclease ABC subunit C compare
SMc02077 -1.5 -2.6 exodeoxyribonuclease III protein compare
SMc01207 -1.5 -3.7 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc03183 -1.5 -4.2 monovalent cation/H+ antiporter subunit F compare
SMc00760 -1.5 -5.4 recombinase A compare
SMc02906 -1.4 -1.2 hypothetical protein compare
SMc00450 -1.4 -3.4 protoheme IX farnesyltransferase compare
SMc00024 -1.3 -3.8 chromosome partition protein compare
SMc02520 -1.3 -7.6 glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) (from data) compare
SMc01361 -1.3 -5.2 dihydroorotase compare
SMc02070 -1.3 -7.2 hypothetical protein compare
SMc03180 -1.3 -6.7 monovalent cation/H+ antiporter subunit C compare
SMc04384 -1.3 -5.0 (R)-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data) compare
SMc01850 -1.2 -3.0 hypothetical protein compare
SMa0431 -1.2 -1.7 hypothetical protein compare
SMc04383 -1.2 -4.2 putative hydrolase, required for lysine catabolism (from data) compare
SMc00298 -1.2 -5.4 methionine aminopeptidase compare
SMa0789 -1.2 -2.9 GntR family transcriptional regulator compare
SMc02714 -1.1 -1.5 hypothetical protein compare
SM_b20752 -1.1 -6.0 3-hydroxyisobutyryl-CoA hydrolase compare
SMc01235 -1.1 -8.2 excinuclease ABC subunit A compare
SMc03179 -1.1 -9.0 monovalent cation/H+ antiporter subunit A compare
SMc00169 -1.1 -9.2 malic enzyme compare
SMc03182 -1.1 -4.5 pH adaptation potassium efflux system E transmembrane protein compare
SMc03100 -1.1 -2.2 hypothetical protein compare
SMc01119 -1.1 -1.7 hypothetical protein compare
SM_b20258 -1.1 -4.2 transcriptional regulator compare
SM_b21633 -1.1 -1.2 enoyl-CoA hydratase compare
SMc02115 -1.1 -1.0 hypothetical protein compare
SMc00684 -1.1 -3.0 hypothetical protein compare
SMc00815 -1.1 -1.4 inosine 5'-monophosphate dehydrogenase compare
SMc02640 -1.1 -4.0 UDP-glucuronic acid epimerase compare
SMc00556 -1.1 -3.6 DNA repair protein RadA compare
SMc00576 -1.0 -4.0 hypothetical protein compare
SMc00419 -1.0 -3.6 glutathione synthetase compare
SMc03181 -1.0 -5.4 monovalent cation/H+ antiporter subunit D compare
SMc01461 -1.0 -3.4 DNA helicase II protein compare
SMc03159 -1.0 -2.3 ABC transporter ATP-binding protein compare
SM_b21494 -1.0 -5.5 ornithine cyclodeaminase compare
SMc02908 -1.0 -3.5 recombination protein RecR compare
SMc00012 -1.0 -1.4 cytochrome C oxidase assembly protein compare
SMc00131 -1.0 -6.8 transcriptional regulator compare
SMc02901 -1.0 -0.9 hypothetical protein compare
SMc00802 -1.0 -0.9 hypothetical protein compare
SMc02765 -0.9 -6.6 tryptophan synthase subunit alpha compare
SMc02505 -0.9 -1.8 hypothetical protein compare
SMc04231 -0.9 -5.6 excinuclease ABC subunit B compare
SMa2215 -0.9 -2.4 GntR family transcriptional regulator compare
SMc03184 -0.9 -1.3 PH adaptation potassium efflux system G transmembrane protein compare
SMc00987 -0.9 -2.1 hypothetical protein compare
SMc01933 -0.9 -1.6 hypothetical protein compare
SMc02069 -0.9 -3.1 hypothetical protein compare
SMc04220 -0.9 -1.4 transcriptional regulator compare
SMc02309 -0.9 -4.7 arsenate reductase compare
SMc01768 -0.9 -3.4 transcriptional regulator compare
SM_b21007 -0.9 -1.9 hypothetical protein compare
SMc03069 -0.9 -2.6 6-phosphogluconolactonase compare
SMc00709 -0.9 -2.7 hypothetical protein compare
SMc02102 -0.9 -2.3 hypothetical protein compare
SMc02766 -0.8 -5.5 tryptophan synthase subunit beta compare
SMc03111 -0.8 -4.6 mannose 6-phosphate isomerase (EC 5.3.1.8) (from data) compare
SMc01468 -0.8 -2.1 chemotaxis protein compare
SM_b21551 -0.8 -1.1 hypothetical protein compare
SMc01877 -0.8 -4.1 DNA repair protein compare
SMc00619 -0.8 -1.9 hypothetical protein compare
SMc00080 -0.8 -1.0 hypothetical protein compare
SMc01099 -0.8 -2.2 tRNA pseudouridine synthase A compare
SMc01965 -0.8 -1.7 spermidine/putrescine ABC transporter ATP-binding protein compare
SMc02758 -0.8 -1.7 nucleotidyl transferase compare
SMc03836 -0.8 -1.5 acyl-CoA thioesterase i protein compare
SMc04242 -0.8 -1.6 zinc uptake regulation protein compare
SMc02685 -0.8 -2.8 hypothetical protein compare
SMc02050 -0.8 -2.4 trigger factor compare
SMc03850 -0.8 -1.2 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SMc01220 -0.8 -3.3 lipopolysaccharide core biosynthesis glycosyl transferase compare
SM_b20086 -0.8 -1.2 hypothetical protein compare
SMc00876 -0.7 -3.3 ATP-binding MRP protein compare
SMa2253 -0.7 -1.3 hypothetical protein compare
SM_b20146 -0.7 -2.4 pyridoxal phosphate biosynthetic protein compare
SMc03863 -0.7 -1.7 50S ribosomal protein L19 compare
SMa0349 -0.7 -1.8 hypothetical protein compare
SMc02114 -0.7 -2.1 hypothetical protein compare
SM_b20323 -0.7 -0.8 transcriptional regulator compare
SMc02144 -0.7 -3.3 phosphate ABC transporter permease compare
SMc01280 -0.7 -1.1 protease compare
SMc01370 -0.7 -1.7 response regulator PleD compare
SMc02863 -0.7 -2.1 recombination protein F compare
SMc03993 -0.7 -3.7 hypothetical protein compare
SMc01187 -0.7 -1.1 rare lipoprotein A compare
SMc01091 -0.7 -1.2 hypothetical protein compare
SMc01124 -0.7 -3.6 PII uridylyl-transferase compare
SMc03128 -0.7 -2.4 ABC transporter permease compare
SMa1456 -0.7 -2.2 hypothetical protein compare
SMa0874 -0.7 -1.9 NodN dehydratase compare
SM_b20370 -0.7 -1.4 ATP-binding transport protein compare
SMc01438 -0.7 -3.3 protease precursor signal peptide protein compare
SMc02909 -0.7 -1.9 transglycosylase transmembrane protein compare
SMc03127 -0.7 -0.9 ABC transporter permease compare
SMc02719 -0.6 -0.8 transposase compare
SMc02036 -0.6 -1.8 transcriptional regulator compare
SMc02280 -0.6 -1.4 hypothetical protein compare
SMc02363 -0.6 -2.1 cytochrome C-type biogenesis transmembrane protein compare
SMc00856 -0.6 -1.0 hypothetical protein compare
SMc00513 -0.6 -2.8 amino acid-binding periplasmic protein compare
SMa1101 -0.6 -1.1 hypothetical protein compare
SMa0941 -0.6 -2.9 hypothetical protein compare
SMc04003 -0.6 -1.3 50S ribosomal protein L36 compare
SMc02635 -0.6 -3.3 DNA repair protein RecO compare
SMc01146 -0.6 -2.0 deoxyribonucleotide triphosphate pyrophosphatase compare
SMc01242 -0.6 -1.8 signal peptide protein compare
SMc03979 -0.6 -1.3 glyceraldehyde-3-phosphate dehydrogenase compare
SMc00712 -0.6 -1.2 hypothetical protein compare
SMc03785 -0.6 -2.5 dinucleoside polyphosphate hydrolase compare
SMc02171 -0.6 -1.8 periplasmic binding ABC transporter protein compare
SMc01164 -0.6 -3.6 hypothetical protein compare
SMc02716 -0.6 -1.5 hypothetical protein compare
SMc02897 -0.6 -1.8 cytochrome C transmembrane protein compare
SMc00569 -0.6 -0.7 hypothetical protein compare
SMc02867 -0.6 -1.8 multidrug-efflux system transmembrane protein compare
SMc03052 -0.6 -2.0 flagellar basal body rod modification protein compare
SMc02561 -0.6 -1.5 hypothetical protein compare
SMc00073 -0.6 -1.0 hypothetical protein compare
SMc04393 -0.6 -3.0 ABC transporter ATP-binding protein compare
SM_b20054 -0.6 -1.5 non-heme chloroperoxidase compare
SMc00431 -0.6 -1.9 hypothetical protein compare
SMc02435 -0.6 -1.6 methyltransferase compare
SMc04346 -0.6 -2.6 ketol-acid reductoisomerase compare
SMc00859 -0.5 -1.6 hypothetical protein compare
SMa1368 -0.5 -1.6 hypothetical protein compare
SMc01757 -0.5 -1.3 hypothetical protein compare
SMa2020 -0.5 -2.1 Transcriptional regulator compare
SMc03236 -0.5 -1.4 glutamine amidotransferase compare
SM_b21580 -0.5 -1.2 hypothetical protein compare
SMc01178 -0.5 -1.2 multidrug transmembrane resistance signal peptide protein compare
SMc00691 -0.5 -2.4 site-specific tyrosine recombinase XerD compare
SMc05020 -0.5 -1.3 entericidin A precursor compare
SMc02767 -0.5 -2.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
SM_b21213 -0.5 -2.7 serinethreonine protein phosphatase compare
SMc00580 -0.5 -1.8 4-hydroxythreonine-4-phosphate dehydrogenase compare
SMc03774 -0.5 -1.6 hypothetical protein compare
SMa0760 -0.5 -0.9 FixT2 anti-kinase compare
SMc03227 -0.5 -2.1 hypothetical protein compare
SMc02558 -0.5 -2.3 hypothetical protein compare
SMc00823 -0.5 -1.0 hypothetical protein compare
SMc03053 -0.5 -0.8 flagellar biosynthesis protein FliQ compare
SM_b20519 -0.5 -1.5 hypothetical protein compare
SMc00555 -0.5 -0.8 colicin V production transmembrane protein compare
SMc00189 -0.5 -1.6 cytochrome C1 protein compare
SMc02757 -0.5 -3.0 hypothetical protein compare
SMc02910 -0.5 -3.9 transport transmembrane protein compare
SMc00917 -0.5 -2.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc03784 -0.5 -2.4 hypothetical protein compare
SM_b21634 -0.5 -2.8 acyl-CoA thioester hydrolase compare
SMc00026 -0.5 -2.7 hypothetical protein compare
SMa0758 -0.5 -1.5 hypothetical protein compare
SMc02755 -0.5 -2.0 S-adenosyl-L-homocysteine hydrolase compare
SMa0222 -0.5 -1.7 GntR family transcriptional regulator compare
SM_b20516 -0.5 -1.7 response regulator protein compare
SM_b20540 -0.5 -0.7 hypothetical protein compare
SMa1924 -0.5 -0.5 hypothetical protein compare
SMc04297 -0.5 -2.1 transcriptional regulator compare
SMa5027 -0.5 -1.9 hypothetical protein compare
SMc03801 -0.5 -0.8 thioredoxin protein compare
SMc03935 -0.5 -3.4 hypothetical protein compare
SM_b20955 -0.5 -1.2 endo-beta-1,3-1,4-glycanase compare
SMa0265 -0.5 -1.7 dehydrogenase compare
SMc04112 -0.5 -2.5 pilus assembly signal peptide protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Sodium nitrite in Sinorhizobium meliloti 1021

For stress Sodium nitrite across organisms