Experiment set2IT050 for Methanococcus maripaludis S2

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS05500 -10.2 -7.1 2-isopropylmalate synthase compare
MMP_RS05280 -9.8 -9.5 COG1361 S-layer family protein compare
MMP_RS05285 -9.6 -11.4 MMPL family transporter compare
MMP_RS06685 -9.2 -14.0 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS03450 -9.1 -4.2 glycine synthesis protein GlyXS (from data) compare
MMP_RS03015 -9.0 -10.7 GTP 3' 8-cyclase MoaA compare
MMP_RS06680 -8.3 -16.4 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS05515 -8.2 -7.7 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS06715 -8.0 -21.3 cache domain-containing protein compare
MMP_RS01455 -7.7 -8.1 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS01175 -7.7 -7.5 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS07345 -7.6 -5.2 glycine synthesis protein GlyXL (from data) compare
MMP_RS07845 -7.4 -4.3 LL-diaminopimelate aminotransferase compare
MMP_RS06730 -7.1 -3.8 phosphopantothenate/pantothenate synthetase compare
MMP_RS07380 -7.0 -4.2 transcription elongation factor Spt5 compare
MMP_RS06350 -7.0 -9.6 HesA/MoeB/ThiF family protein compare
MMP_RS03035 -7.0 -6.0 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS04710 -6.9 -3.2 hypothetical protein compare
MMP_RS06975 -6.8 -3.8 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS03435 -6.7 -3.6 ketol-acid reductoisomerase compare
MMP_RS06270 -6.7 -9.6 TIGR00300 family protein compare
MMP_RS03640 -6.5 -6.3 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS01020 -6.3 -1.7 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS08720 -6.2 -3.3 4Fe-4S binding protein compare
MMP_RS06720 -6.1 -10.2 response regulator transcription factor compare
MMP_RS07365 -6.0 -13.0 2-phosphoglycerate kinase compare
MMP_RS05930 -6.0 -4.8 3-isopropylmalate dehydratase large subunit compare
MMP_RS06355 -6.0 -3.7 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS06700 -6.0 -19.0 hypothetical protein compare
MMP_RS04615 -5.8 -4.5 PDGLE domain-containing protein compare
MMP_RS04090 -5.7 -5.7 hypothetical protein compare
MMP_RS07730 -5.6 -4.5 pyruvate synthase subunit beta compare
MMP_RS06345 -5.5 -13.2 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS07605 -5.5 -7.9 diadenylate cyclase compare
MMP_RS04620 -5.4 -18.2 cobalt transporter CbiM compare
MMP_RS04605 -5.3 -7.8 cobalt ECF transporter T component CbiQ compare
MMP_RS06340 -5.3 -9.3 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS08745 -5.3 -8.8 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS08635 -5.3 -3.4 UbiA family prenyltransferase compare
MMP_RS04215 -5.3 -6.5 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS05925 -5.2 -8.3 small nuclear ribonucleoprotein compare
MMP_RS03960 -5.2 -2.0 hypothetical protein compare
MMP_RS05095 -5.2 -15.5 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS03315 -5.2 -2.3 ferrous iron transport protein A compare
MMP_RS05265 -5.1 -3.3 2-isopropylmalate synthase compare
MMP_RS06375 -5.1 -8.0 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS08460 -5.1 -4.8 proteasome-activating nucleotidase compare
MMP_RS01500 -5.1 -4.6 CBS domain-containing protein compare
MMP_RS04500 -5.1 -21.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS05080 -5.0 -18.2 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS01005 -5.0 -1.9 riboflavin synthase compare
MMP_RS06625 -4.9 -4.4 DNA primase compare
MMP_RS06370 -4.9 -10.0 biotin synthase BioB compare
MMP_RS07635 -4.8 -10.0 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS03445 -4.7 -2.2 methanogenesis marker 17 protein compare
MMP_RS05085 -4.7 -15.3 AAA family ATPase compare
MMP_RS01830 -4.7 -2.5 tRNA-Val compare
MMP_RS07545 -4.7 -1.8 HTH domain-containing protein compare
MMP_RS05100 -4.6 -27.5 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS08105 -4.6 -11.2 6-carboxyhexanoate--CoA ligase compare
MMP_RS07185 -4.6 -17.8 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS04780 -4.5 -4.5 ribonuclease P compare
MMP_RS06230 -4.5 -5.9 helix-turn-helix domain-containing protein compare
MMP_RS05075 -4.5 -22.6 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS06400 -4.5 -2.5 4Fe-4S binding protein compare
MMP_RS08095 -4.5 -9.3 dethiobiotin synthase compare
MMP_RS06285 -4.5 -4.5 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS00300 -4.4 -1.7 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS02900 -4.4 -1.2 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS05090 -4.3 -14.9 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS03600 -4.3 -4.6 triose-phosphate isomerase compare
MMP_RS07645 -4.3 -10.6 aldehyde dehydrogenase family protein compare
MMP_RS06705 -4.2 -14.0 formate/nitrite transporter family protein compare
MMP_RS05070 -4.2 -11.0 4Fe-4S dicluster domain-containing protein compare
MMP_RS05920 -4.1 -1.6 50S ribosomal protein L37e compare
MMP_RS05060 -4.0 -23.0 AAA family ATPase compare
MMP_RS06120 -4.0 -4.6 UPF0147 family protein compare
MMP_RS01225 -3.9 -8.6 DUF5379 domain-containing protein compare
MMP_RS01755 -3.9 -2.7 DUF2097 domain-containing protein compare
MMP_RS06020 -3.9 -7.5 archaeoflavoprotein AfpA compare
MMP_RS00295 -3.9 -5.2 gamma carbonic anhydrase family protein compare
MMP_RS01325 -3.9 -3.7 dihydroneopterin aldolase family protein compare
MMP_RS02010 -3.9 -13.5 PHP domain-containing protein compare
MMP_RS00305 -3.9 -3.8 phosphoribosyl-ATP diphosphatase compare
MMP_RS08100 -3.8 -8.4 8-amino-7-oxononanoate synthase compare
MMP_RS06895 -3.8 -4.0 selenocysteine-specific translation elongation factor compare
MMP_RS05055 -3.8 -21.0 DUF166 domain-containing protein compare
MMP_RS02345 -3.8 -7.3 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS06175 -3.7 -11.1 winged helix-turn-helix transcriptional regulator compare
MMP_RS03025 -3.6 -10.1 molybdenum cofactor guanylyltransferase compare
MMP_RS02280 -3.6 -1.9 DUF211 domain-containing protein compare
MMP_RS01700 -3.6 -1.9 dihydroxy-acid dehydratase compare
MMP_RS00515 -3.6 -1.9 DUF655 domain-containing protein compare
MMP_RS05065 -3.6 -8.3 CooT family nickel-binding protein compare
MMP_RS02240 -3.5 -7.9 methanogenesis marker 7 protein compare
MMP_RS04790 -3.5 -17.3 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS05290 -3.5 -6.3 TetR/AcrR family transcriptional regulator compare
MMP_RS06295 -3.4 -11.5 methanogenesis marker 14 protein compare
MMP_RS01380 -3.4 -7.1 PHP domain-containing protein compare
MMP_RS08300 -3.4 -2.3 metal-sulfur cluster assembly factor compare
MMP_RS00685 -3.4 -8.8 2-phospho-L-lactate guanylyltransferase compare
MMP_RS08715 -3.4 -3.2 formylmethanofuran dehydrogenase subunit B compare
MMP_RS08645 -3.3 -13.9 UPF0179 family protein compare
MMP_RS07735 -3.3 -1.7 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS04685 -3.2 -4.7 DUF126 domain-containing protein compare
MMP_RS04585 -3.2 -13.6 AIR synthase related protein compare
MMP_RS07445 -3.2 -5.7 helix-turn-helix domain-containing protein compare
MMP_RS07630 -3.2 -2.1 ATP-binding cassette domain-containing protein compare
MMP_RS08435 -3.2 -5.4 Era-like GTP-binding protein compare
MMP_RS04870 -3.2 -8.3 TIGR02253 family HAD-type hydrolase compare
MMP_RS05845 -3.1 -3.1 tRNA-intron lyase compare
MMP_RS00290 -3.1 -11.4 hypothetical protein compare
MMP_RS06930 -3.1 -15.3 MBL fold metallo-hydrolase compare
MMP_RS02145 -3.1 -9.7 winged helix-turn-helix transcriptional regulator compare
MMP_RS08790 -3.0 -2.9 translation initiation factor IF-2 subunit alpha compare
MMP_RS01800 -3.0 -6.3 TIGR00303 family protein compare
MMP_RS07600 -3.0 -6.0 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS03110 -3.0 -12.8 glycosyltransferase family 2 protein compare
MMP_RS03580 -3.0 -5.2 signal recognition particle-docking protein FtsY compare
MMP_RS01795 -3.0 -3.6 methanogenesis marker 6 protein compare
MMP_RS02195 -2.9 -5.5 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS06630 -2.9 -2.8 UPF0058 family protein compare
MMP_RS05345 -2.8 -9.9 hypothetical protein compare
MMP_RS07390 -2.8 -5.2 cell division protein FtsZ compare
MMP_RS07555 -2.7 -1.4 monovalent cation/H+ antiporter subunit E compare
MMP_RS08240 -2.7 -9.6 methanogenesis marker 16 metalloprotein compare
MMP_RS04890 -2.6 -1.9 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS07710 -2.6 -12.2 cell division protein FtsZ compare
MMP_RS09020 -2.6 -2.9 hypothetical protein compare
MMP_RS05550 -2.6 -1.5 cation:proton antiporter compare
MMP_RS01385 -2.6 -1.3 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS03700 -2.5 -10.9 sodium:proton antiporter compare
MMP_RS01545 -2.5 -2.1 CBS domain-containing protein compare
MMP_RS02340 -2.5 -2.6 DNA-directed RNA polymerase subunit E'' compare
MMP_RS05425 -2.5 -9.0 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS01985 -2.5 -7.7 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS05555 -2.4 -2.3 DUF4040 domain-containing protein compare
MMP_RS05430 -2.4 -5.6 TIGR00288 family NYN domain-containing protein compare
MMP_RS04775 -2.3 -5.9 adenosylhomocysteinase compare
MMP_RS07580 -2.3 -3.1 DUF356 domain-containing protein compare
MMP_RS01220 -2.3 -10.9 hypothetical protein compare
MMP_RS00695 -2.3 -1.7 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS08330 -2.2 -8.9 NADH-quinone oxidoreductase subunit H compare
MMP_RS01960 -2.2 -0.8 hypothetical protein compare
MMP_RS06925 -2.2 -4.7 ribonuclease VapC4 compare
MMP_RS05440 -2.2 -11.0 winged helix-turn-helix transcriptional regulator compare
MMP_RS07195 -2.2 -13.9 M20 family metallo-hydrolase compare
MMP_RS01610 -2.2 -6.8 hypothetical protein compare
MMP_RS05505 -2.2 -14.7 class IV adenylate cyclase compare
MMP_RS00455 -2.2 -10.9 orotate phosphoribosyltransferase-like protein compare
MMP_RS07200 -2.1 -9.4 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS08210 -2.1 -4.4 phosphatidylglycerophosphatase A compare
MMP_RS01725 -2.0 -7.4 class I SAM-dependent methyltransferase family protein compare
MMP_RS03475 -2.0 -1.3 hypothetical protein compare
MMP_RS00750 -2.0 -4.1 fumarate hydratase compare
MMP_RS00985 -2.0 -8.8 CDC48 family AAA ATPase compare
MMP_RS06725 -2.0 -11.9 hypothetical protein compare
MMP_RS06130 -2.0 -4.4 peptidylprolyl isomerase compare
MMP_RS05540 -1.9 -2.7 hypothetical protein compare
MMP_RS07005 -1.9 -1.5 4Fe-4S binding protein compare
MMP_RS02110 -1.9 -2.0 hypothetical protein compare
MMP_RS00720 -1.9 -12.5 metal-dependent hydrolase compare
MMP_RS07410 -1.9 -12.8 4-demethylwyosine synthase TYW1 compare
MMP_RS03250 -1.9 -3.5 MJ1244 family protein compare
MMP_RS08820 -1.9 -8.6 hypothetical protein compare
MMP_RS07420 -1.9 -5.7 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS03145 -1.9 -7.3 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS03420 -1.9 -3.0 acetolactate synthase small subunit compare
MMP_RS07705 -1.9 -11.0 transcriptional regulator compare
MMP_RS03140 -1.9 -14.5 hypothetical protein compare
MMP_RS06475 -1.9 -7.2 FAD-dependent oxidoreductase compare
MMP_RS01265 -1.8 -3.3 hypothetical protein compare
MMP_RS08440 -1.8 -3.3 cell division protein SepF compare
MMP_RS01925 -1.7 -7.4 DUF1616 domain-containing protein compare
MMP_RS04955 -1.7 -4.0 DNA topoisomerase I compare
MMP_RS06885 -1.7 -4.2 50S ribosome-binding GTPase compare
MMP_RS08445 -1.7 -5.2 DUF2099 family protein compare
MMP_RS05815 -1.7 -4.0 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS08650 -1.7 -5.3 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS06980 -1.7 -6.9 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS00040 -1.7 -8.1 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS08165 -1.7 -2.1 phosphoglycerate dehydrogenase compare
MMP_RS06315 -1.7 -1.8 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS08760 -1.7 -2.4 hypothetical protein compare
MMP_RS00110 -1.6 -2.6 hypothetical protein compare
MMP_RS07385 -1.6 -1.5 protein translocase SEC61 complex subunit gamma compare
MMP_RS00555 -1.6 -9.7 MFS transporter compare
MMP_RS03400 -1.6 -4.8 archease compare
MMP_RS02875 -1.6 -8.9 chorismate pyruvate-lyase family protein compare
MMP_RS02170 -1.6 -7.4 CBS domain-containing protein compare
MMP_RS02800 -1.6 -6.2 nucleotidyltransferase domain-containing protein compare
MMP_RS07525 -1.6 -7.9 4Fe-4S binding protein compare
MMP_RS08195 -1.5 -6.3 hypothetical protein compare
MMP_RS05850 -1.5 -4.3 Ldh family oxidoreductase compare
MMP_RS02165 -1.5 -7.9 tRNA-dihydrouridine synthase compare
MMP_RS05875 -1.5 -2.0 hydroxyethylthiazole kinase compare
MMP_RS02780 -1.4 -6.0 hypothetical protein compare
MMP_RS08320 -1.4 -5.8 molybdopterin molybdotransferase MoeA compare
MMP_RS06105 -1.4 -7.6 hydrogenase maturation peptidase HycI compare
MMP_RS05640 -1.3 -7.2 UTP--glucose-1-phosphate uridylyltransferase GalU compare


Specific Phenotypes

For 1 genes in this experiment

For nutrient t2 Sodium acetate in Methanococcus maripaludis S2

For nutrient t2 Sodium acetate across organisms