Experiment set2IT050 for Methanococcus maripaludis S2

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS01370 +3.8 28.0 acetate--CoA ligase family protein compare
MMP_RS07860 +1.1 1.1 hypothetical protein compare
MMP_RS08345 +0.9 7.1 4Fe-4S binding protein compare
MMP_RS08340 +0.9 4.9 4Fe-4S binding protein compare
MMP_RS05950 +0.9 6.6 nickel-dependent hydrogenase large subunit compare
MMP_RS05435 +0.8 6.0 5'/3'-nucleotidase SurE compare
MMP_RS08350 +0.8 1.4 hypothetical protein compare
MMP_RS02745 +0.8 2.2 hypothetical protein compare
MMP_RS08365 +0.8 4.2 energy conserving hydrogenase EhbF compare
MMP_RS03215 +0.8 5.0 MBL fold metallo-hydrolase compare
MMP_RS08360 +0.7 4.1 hypothetical protein compare
MMP_RS06155 +0.7 2.4 DUF4186 domain-containing protein compare
MMP_RS07095 +0.7 1.9 PspC domain-containing protein compare
MMP_RS01650 +0.7 1.1 sulfurtransferase TusA family protein compare
MMP_RS08370 +0.7 0.8 cation:proton antiporter subunit C compare
MMP_RS06575 +0.7 4.8 fluoride efflux transporter CrcB compare
MMP_RS03390 +0.7 3.2 malate dehydrogenase compare
MMP_RS08355 +0.6 3.6 Na(+)/H(+) antiporter subunit B compare
MMP_RS05675 +0.6 2.2 phosphate ABC transporter ATP-binding protein PstB compare
MMP_RS03320 +0.6 1.6 metal-dependent transcriptional regulator compare
MMP_RS07840 +0.5 2.3 ribonuclease III compare
MMP_RS01865 +0.5 1.4 GPR1/FUN34/YaaH family transporter compare
MMP_RS00675 +0.5 0.8 nitroreductase family protein compare
MMP_RS01435 +0.5 2.8 DMT family transporter compare
MMP_RS05975 +0.5 1.2 hypothetical protein compare
MMP_RS01620 +0.5 3.3 hypothetical protein compare
MMP_RS01570 +0.4 1.2 hypothetical protein compare
MMP_RS02595 +0.4 1.1 putative zinc-binding protein compare
MMP_RS07120 +0.4 3.5 coenzyme F420 hydrogenase subunit alpha compare
MMP_RS06905 +0.4 1.4 hypothetical protein compare
MMP_RS07130 +0.4 3.1 coenzyme F420 hydrogenase subunit gamma compare
MMP_RS06590 +0.4 1.6 GNAT family N-acetyltransferase compare
MMP_RS08775 +0.4 2.2 methanogenesis marker 9 domain-containing protein compare
MMP_RS04740 +0.4 2.2 DUF473 domain-containing protein compare
MMP_RS08335 +0.4 1.4 NADH-quinone oxidoreductase subunit B family protein compare
MMP_RS07725 +0.4 2.4 4Fe-4S dicluster domain-containing protein compare
MMP_RS08280 +0.4 2.0 proteasome assembly chaperone family protein compare
MMP_RS02495 +0.4 1.7 hypothetical protein compare
MMP_RS05795 +0.4 1.3 redox-regulated ATPase YchF compare
MMP_RS06860 +0.4 1.1 4Fe-4S binding protein compare
MMP_RS03150 +0.4 2.9 phosphoglycerate mutase compare
MMP_RS02245 +0.4 1.7 hypothetical protein compare
MMP_RS06650 +0.4 2.7 glycoside hydrolase family 57 protein compare
MMP_RS07125 +0.4 2.3 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS04480 +0.4 3.3 lysine 2 3-aminomutase compare
MMP_RS07835 +0.4 1.7 TldD/PmbA family protein compare
MMP_RS06910 +0.4 2.6 RlmF-related methyltransferase compare
MMP_RS06140 +0.4 1.1 radical SAM protein compare
MMP_RS06610 +0.4 2.0 DUF2334 domain-containing protein compare
MMP_RS06520 +0.3 2.7 DUF1786 domain-containing protein compare
MMP_RS00705 +0.3 1.0 hypothetical protein compare
MMP_RS06660 +0.3 2.8 glycosyltransferase family 4 protein compare
MMP_RS07850 +0.3 1.0 prephenate dehydratase compare
MMP_RS00955 +0.3 3.0 coenzyme gamma-F420-2:alpha-L-glutamate ligase compare
MMP_RS08785 +0.3 0.7 RNA-protein complex protein Nop10 compare
MMP_RS03890 +0.3 1.6 DUF2540 domain-containing protein compare
MMP_RS06045 +0.3 2.7 DNA polymerase compare
MMP_RS01630 +0.3 2.6 N-glycosylase/DNA lyase compare
MMP_RS00335 +0.3 2.1 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMP_RS05355 +0.3 0.5 hypothetical protein compare
MMP_RS00810 +0.3 1.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS02295 +0.3 2.6 TatD family hydrolase compare
MMP_RS05940 +0.3 2.5 corrinoid protein compare
MMP_RS06515 +0.3 1.2 UPF0489 family protein compare
MMP_RS08315 +0.3 1.0 S-methyl-5-thioribose-1-phosphate isomerase compare
MMP_RS03385 +0.3 0.6 cation diffusion facilitator family transporter compare
MMP_RS01420 +0.3 0.9 hypothetical protein compare
MMP_RS06570 +0.3 1.1 DUF190 domain-containing protein compare
MMP_RS08835 +0.3 2.0 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein compare
MMP_RS02805 +0.3 0.7 HEPN domain-containing protein compare
MMP_RS09025 +0.3 0.6 hypothetical protein compare
MMP_RS05450 +0.3 1.4 CoB--CoM heterodisulfide reductase subunit C compare
MMP_RS08085 +0.3 2.2 hypothetical protein compare
MMP_RS00280 +0.3 2.2 DUF2118 domain-containing protein compare
MMP_RS03020 +0.3 1.8 peptidylprolyl isomerase compare
MMP_RS06335 +0.3 1.5 HAD family hydrolase compare
MMP_RS03775 +0.3 0.9 4Fe-4S dicluster domain-containing protein compare
MMP_RS05720 +0.3 0.8 signal recognition particle subunit SRP19/SEC65 family protein compare
MMP_RS08980 +0.3 1.6 hypothetical protein compare
MMP_RS01515 +0.3 1.9 PINc/VapC family ATPase compare
MMP_RS02680 +0.3 1.4 ABC transporter permease compare
MMP_RS06745 +0.3 1.7 DUF2119 domain-containing protein compare
MMP_RS06190 +0.3 1.8 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO compare
MMP_RS04520 +0.3 1.4 nucleoside deaminase compare
MMP_RS05980 +0.3 1.8 ferritin compare
MMP_RS03740 +0.3 1.5 indolepyruvate oxidoreductase subunit beta compare
MMP_RS03520 +0.3 0.8 YwbE family protein compare
MMP_RS08090 +0.3 1.3 hypothetical protein compare
MMP_RS07100 +0.3 2.0 hypothetical protein compare
MMP_RS08930 +0.3 0.7 hypothetical protein compare
MMP_RS07970 +0.3 0.9 hypothetical protein compare
MMP_RS08455 +0.3 1.0 multiprotein bridging factor aMBF1 compare
MMP_RS00660 +0.3 2.2 alkaline phosphatase family protein compare
MMP_RS01320 +0.3 0.8 hypothetical protein compare
MMP_RS00795 +0.3 1.6 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS06460 +0.3 0.7 pyrimidine dimer DNA glycosylase/endonuclease V compare
MMP_RS03785 +0.3 1.4 cupin domain-containing protein compare
MMP_RS08290 +0.2 1.6 DNA-binding protein Alba compare
MMP_RS07890 +0.2 0.7 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS02290 +0.2 1.3 MBL fold metallo-hydrolase compare
MMP_RS01685 +0.2 1.1 indolepyruvate oxidoreductase subunit beta compare
MMP_RS01115 +0.2 2.0 molybdopterin molybdotransferase MoeA compare
MMP_RS05900 +0.2 1.4 tetratricopeptide repeat protein compare
MMP_RS05830 +0.2 1.3 peptidyl-prolyl cis-trans isomerase compare
MMP_RS01550 +0.2 1.8 DUF1624 domain-containing protein compare
MMP_RS08175 +0.2 1.5 7-cyano-7-deazaguanine synthase compare
MMP_RS05660 +0.2 1.8 phosphate ABC transporter substrate-binding protein compare
MMP_RS04205 +0.2 1.8 carboxymuconolactone decarboxylase family protein compare
MMP_RS06490 +0.2 1.1 hypothetical protein compare
MMP_RS05820 +0.2 1.5 RNA-binding transcriptional accessory protein compare
MMP_RS08260 +0.2 1.8 DUF99 family protein compare
MMP_RS07335 +0.2 0.8 tRNA (cytidine(56)-2'-O)-methyltransferase compare
MMP_RS00105 +0.2 1.4 hypothetical protein compare
MMP_RS08625 +0.2 1.9 type II/IV secretion system ATPase subunit compare
MMP_RS07560 +0.2 1.3 prefoldin subunit alpha compare
MMP_RS07155 +0.2 1.6 MFS transporter compare
MMP_RS08310 +0.2 0.7 TMEM165/GDT1 family protein compare
MMP_RS04730 +0.2 1.7 flavodoxin family protein compare
MMP_RS02890 +0.2 1.5 TIGR00296 family protein compare
MMP_RS08265 +0.2 1.4 rubrerythrin compare
MMP_RS01125 +0.2 1.2 thioredoxin family protein compare
MMP_RS03965 +0.2 0.8 hypothetical protein compare
MMP_RS02650 +0.2 1.2 flavodoxin family protein compare
MMP_RS02175 +0.2 0.2 DUF1611 domain-containing protein compare
MMP_RS02025 +0.2 1.5 DNA-directed DNA polymerase compare
MMP_RS01765 +0.2 0.9 HIT family protein compare
MMP_RS06300 +0.2 1.4 ABC transporter substrate-binding protein compare
MMP_RS03245 +0.2 1.1 DNA repair and recombination protein RadB compare
MMP_RS06545 +0.2 1.5 ferredoxin family protein compare
MMP_RS04030 +0.2 1.7 hypothetical protein compare
MMP_RS08245 +0.2 1.2 DUF4013 domain-containing protein compare
MMP_RS06770 +0.2 1.3 DHH family phosphoesterase compare
MMP_RS01780 +0.2 1.5 TrmJ/YjtD family RNA methyltransferase compare
MMP_RS05990 +0.2 1.2 DsrE family protein compare
MMP_RS09065 +0.2 1.6 hypothetical protein compare
MMP_RS08610 +0.2 1.4 flagellar protein F compare
MMP_RS01680 +0.2 1.5 phenylacetate--CoA ligase compare
MMP_RS01965 +0.2 1.2 DUF1616 domain-containing protein compare
MMP_RS08325 +0.2 1.4 hypothetical protein compare
MMP_RS07145 +0.2 1.3 AmmeMemoRadiSam system protein B compare
MMP_RS02375 +0.2 1.4 hypothetical protein compare
MMP_RS02510 +0.2 1.3 site-specific integrase compare
MMP_RS00800 +0.2 1.6 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS07435 +0.2 0.6 GMP synthase subunit A compare
MMP_RS02770 +0.2 0.9 hypothetical protein compare
MMP_RS06765 +0.2 1.3 flap endonuclease-1 compare
MMP_RS07620 +0.2 1.0 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS01090 +0.2 1.3 ABC transporter substrate-binding protein compare
MMP_RS08075 +0.2 1.1 DUF749 domain-containing protein compare
MMP_RS02455 +0.2 1.0 hypothetical protein compare
MMP_RS08235 +0.2 1.2 hypothetical protein compare
MMP_RS04515 +0.2 1.3 betaine/proline/choline family ABC transporter ATP-binding protein compare
MMP_RS03405 +0.2 1.1 RNA 3'-terminal phosphate cyclase compare
MMP_RS00375 +0.2 1.4 ammonium transporter compare
MMP_RS06875 +0.2 1.4 FAD-dependent oxidoreductase compare
MMP_RS04595 +0.2 1.3 hypothetical protein compare
MMP_RS05715 +0.2 1.1 hypothetical protein compare
MMP_RS02815 +0.2 0.7 hypothetical protein compare
MMP_RS04020 +0.2 0.8 hypothetical protein compare
MMP_RS08380 +0.2 1.1 phosphatase PAP2 family protein compare
MMP_RS02370 +0.2 0.8 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMP_RS01130 +0.2 1.3 flavoprotein compare
MMP_RS08670 +0.2 1.1 metallophosphoesterase compare
MMP_RS06080 +0.2 1.5 radical SAM protein compare
MMP_RS01485 +0.2 1.1 right-handed parallel beta-helix repeat-containing protein compare
MMP_RS02315 +0.2 1.1 RimK family alpha-L-glutamate ligase compare
MMP_RS03300 +0.2 0.2 TOBE domain-containing protein compare
MMP_RS07140 +0.2 1.4 TIGR00341 family protein compare
MMP_RS08430 +0.2 0.9 HAD family hydrolase compare
MMP_RS07615 +0.2 1.1 energy-coupling factor ABC transporter permease compare
MMP_RS00325 +0.2 0.3 RNA-binding protein compare
MMP_RS07715 +0.2 1.2 YfcE family phosphodiesterase compare
MMP_RS08990 +0.2 0.9 hypothetical protein compare
MMP_RS01145 +0.2 1.3 ABC transporter ATP-binding protein compare
MMP_RS00195 +0.2 1.5 DUF4013 domain-containing protein compare
MMP_RS08160 +0.2 0.8 EamA family transporter compare
MMP_RS00155 +0.2 1.0 heavy metal-binding domain-containing protein compare
MMP_RS06665 +0.2 1.0 glycogen/starch synthase compare
MMP_RS03860 +0.2 1.3 hypothetical protein compare
MMP_RS07985 +0.2 1.4 nitroreductase family protein compare
MMP_RS06365 +0.2 0.6 hypothetical protein compare
MMP_RS02475 +0.2 0.3 hypothetical protein compare
MMP_RS01030 +0.2 1.0 MTAP family purine nucleoside phosphorylase compare
MMP_RS02675 +0.2 0.6 hypothetical protein compare
MMP_RS01635 +0.1 1.0 thiamine pyrophosphate-dependent enzyme compare
MMP_RS07650 +0.1 1.3 TldD/PmbA family protein compare
MMP_RS00645 +0.1 1.2 iron ABC transporter permease compare
MMP_RS01470 +0.1 0.7 ATP-binding cassette domain-containing protein compare
MMP_RS04315 +0.1 1.1 corrinoid protein compare
MMP_RS05170 +0.1 0.8 lysine exporter LysO family protein compare
MMP_RS08615 +0.1 0.4 flagellar protein G compare
MMP_RS05365 +0.1 0.4 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
MMP_RS07150 +0.1 1.0 MTH895/ArsE family thioredoxin-like protein compare
MMP_RS02590 +0.1 0.9 low molecular weight phosphatase family protein compare
MMP_RS07135 +0.1 1.0 coenzyme F420 hydrogenase subunit beta compare
MMP_RS02795 +0.1 1.1 sulfate permease compare
MMP_RS04635 +0.1 1.0 GNAT family N-acetyltransferase compare
MMP_RS07925 +0.1 0.6 haloacid dehalogenase compare
MMP_RS03235 +0.1 0.7 tRNA pseudouridine(13) synthase TruD compare
MMP_RS09050 +0.1 0.7 CAP domain-containing protein compare


Specific Phenotypes

For 1 genes in this experiment

For nutrient t2 Sodium acetate in Methanococcus maripaludis S2

For nutrient t2 Sodium acetate across organisms