Experiment set2IT050 for Methanococcus maripaludis JJ

Compare to:

H2 McCas, 5g/L bicarb, 40 psi H2CO2

200 most important genes:

  gene name fitness t score description  
MMJJ_RS09190 -5.2 -3.2 tryptophan synthase subunit beta compare
MMJJ_RS09375 -4.1 -2.6 hypothetical protein compare
MMJJ_RS07950 -4.1 -4.8 4Fe-4S binding protein compare
MMJJ_RS04730 -3.9 -3.7 tyrosine decarboxylase MfnA compare
MMJJ_RS00370 -3.7 -3.4 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS01755 -3.5 -3.4 ferrous iron transport protein B compare
MMJJ_RS06840 -3.4 -4.6 nickel-dependent hydrogenase large subunit compare
MMJJ_RS04475 -3.4 -6.0 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS05535 -3.4 -15.9 hypothetical protein compare
MMJJ_RS00275 -3.4 -3.9 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS05650 -3.3 -3.9 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS03055 -3.3 -4.7 hypothetical protein compare
MMJJ_RS04685 -3.3 -11.2 carbamoyltransferase HypF compare
MMJJ_RS07350 -3.2 -5.2 4Fe-4S binding protein compare
MMJJ_RS08625 -3.2 -9.8 magnesium/cobalt transporter CorA compare
MMJJ_RS00355 -3.2 -4.3 ribonuclease P protein component 4 compare
MMJJ_RS05620 -3.2 -5.2 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS05590 -3.1 -3.3 homoserine dehydrogenase compare
MMJJ_RS04485 -3.1 -10.9 riboflavin synthase compare
MMJJ_RS07455 -3.1 -8.1 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS00560 -3.1 -4.4 homoisocitrate dehydrogenase compare
MMJJ_RS06750 -3.1 -3.6 homoaconitase large subunit compare
MMJJ_RS07945 -3.0 -4.0 4Fe-4S binding protein compare
MMJJ_RS06600 -3.0 -4.4 DUF555 domain-containing protein compare
MMJJ_RS01600 -3.0 -4.4 radical SAM protein compare
MMJJ_RS06910 -3.0 -4.9 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS06490 -3.0 -4.0 methanogenesis marker 2 protein compare
MMJJ_RS06155 -3.0 -7.2 phosphatidylglycerophosphatase A compare
MMJJ_RS08660 -2.9 -4.7 acetylornithine transaminase compare
MMJJ_RS03620 -2.9 -6.5 DUF2097 domain-containing protein compare
MMJJ_RS08080 -2.9 -11.2 TIGR00300 family protein compare
MMJJ_RS03670 -2.8 -5.5 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS07725 -2.8 -8.4 DNA primase DnaG compare
MMJJ_RS06855 -2.8 -2.6 DUF2104 domain-containing protein compare
MMJJ_RS01350 -2.8 -7.2 sodium:proton antiporter compare
MMJJ_RS07470 -2.8 -2.7 50S ribosome-binding GTPase compare
MMJJ_RS03005 -2.8 -4.1 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS01935 -2.7 -6.1 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS04700 -2.7 -8.7 deoxyhypusine synthase compare
MMJJ_RS04595 -2.7 -6.5 hypothetical protein compare
MMJJ_RS07360 -2.7 -2.6 TIGR00269 family protein compare
MMJJ_RS06255 -2.7 -8.3 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS06860 -2.7 -4.0 hypothetical protein compare
MMJJ_RS06225 -2.7 -2.8 adenosylmethionine decarboxylase compare
MMJJ_RS03230 -2.7 -6.0 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS06270 -2.7 -9.4 dethiobiotin synthase compare
MMJJ_RS00645 -2.6 -14.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS08095 -2.6 -4.8 cobyric acid synthase CobQ compare
MMJJ_RS02045 -2.6 -4.7 molybdenum cofactor guanylyltransferase compare
MMJJ_RS04200 -2.6 -8.1 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS05380 -2.5 -2.2 hypothetical protein compare
MMJJ_RS06625 -2.5 -2.5 pyruvate synthase subunit PorB compare
MMJJ_RS06040 -2.5 -5.1 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS07000 -2.5 -2.7 TrkH family potassium uptake protein compare
MMJJ_RS05995 -2.5 -3.6 ATP-binding cassette domain-containing protein compare
MMJJ_RS04980 -2.5 -5.5 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS03580 -2.5 -3.9 TIGR00303 family protein compare
MMJJ_RS00270 -2.4 -3.9 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS04995 -2.4 -6.4 Tfx family DNA-binding protein compare
MMJJ_RS08010 -2.4 -7.3 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS06510 -2.4 -3.3 LL-diaminopimelate aminotransferase compare
MMJJ_RS03225 -2.4 -3.8 4Fe-4S binding protein compare
MMJJ_RS09135 -2.4 -11.2 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS07980 -2.4 -12.7 biotin synthase BioB compare
MMJJ_RS05155 -2.4 -7.8 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS04145 -2.4 -10.0 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS01750 -2.4 -3.6 ferrous iron transport protein A compare
MMJJ_RS07720 -2.4 -2.9 UPF0058 family protein compare
MMJJ_RS08535 -2.4 -4.8 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS02200 -2.4 -10.0 chorismate pyruvate-lyase family protein compare
MMJJ_RS01880 -2.3 -3.5 RlmE family RNA methyltransferase compare
MMJJ_RS06695 -2.3 -3.4 amidohydrolase compare
MMJJ_RS05260 -2.3 -6.3 ATP-grasp domain-containing protein compare
MMJJ_RS07705 -2.3 -3.5 GTP-binding protein EngB compare
MMJJ_RS03840 -2.3 -4.7 DHH family phosphoesterase compare
MMJJ_RS02090 -2.3 -6.7 tyramine--L-glutamate ligase compare
MMJJ_RS01200 -2.3 -3.3 PRC-barrel domain-containing protein compare
MMJJ_RS06715 -2.3 -12.0 lactaldehyde dehydrogenase compare
MMJJ_RS08840 -2.3 -4.6 calcium/sodium antiporter compare
MMJJ_RS08055 -2.2 -8.1 methanogenesis marker 14 protein compare
MMJJ_RS02920 -2.2 -3.1 30S ribosomal protein S27ae compare
MMJJ_RS06260 -2.2 -7.3 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS01870 -2.2 -2.0 methanogenesis marker 15 protein compare
MMJJ_RS03760 -2.2 -4.1 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS00475 -2.2 -3.4 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS00125 -2.2 -3.2 KEOPS complex subunit Cgi121 compare
MMJJ_RS05655 -2.2 -6.5 HisA/HisF family protein compare
MMJJ_RS08850 -2.2 -2.4 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS03190 -2.2 -4.0 phosphopyruvate hydratase compare
MMJJ_RS04155 -2.2 -7.3 hypothetical protein compare
MMJJ_RS03865 -2.2 -3.4 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS04520 -2.1 -6.2 coenzyme F430 synthase compare
MMJJ_RS06875 -2.1 -2.1 hypothetical protein compare
MMJJ_RS06390 -2.1 -2.7 NADPH-dependent F420 reductase compare
MMJJ_RS00215 -2.1 -3.3 CCA tRNA nucleotidyltransferase compare
MMJJ_RS06175 -2.1 -3.1 DUF1743 domain-containing protein compare
MMJJ_RS03615 -2.1 -3.8 cobalt-precorrin-8 methylmutase compare
MMJJ_RS06725 -2.1 -13.0 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS05375 -2.1 -14.3 radical SAM protein compare
MMJJ_RS07430 -2.1 -5.2 ribonuclease VapC compare
MMJJ_RS06265 -2.1 -12.9 8-amino-7-oxononanoate synthase compare
MMJJ_RS08575 -2.1 -5.9 hypothetical protein compare
MMJJ_RS03965 -2.1 -3.1 DNA-directed RNA polymerase subunit L compare
MMJJ_RS07190 -2.0 -4.5 RtcB family protein compare
MMJJ_RS08330 -2.0 -3.8 SufD family Fe-S cluster assembly protein compare
MMJJ_RS00205 -2.0 -5.9 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS03200 -2.0 -2.3 uroporphyrinogen-III synthase compare
MMJJ_RS05930 -2.0 -2.1 cell division protein SepF compare
MMJJ_RS03820 -2.0 -3.8 hydrogenase formation protein HypD compare
MMJJ_RS03540 -2.0 -5.9 TIGR00289 family protein compare
MMJJ_RS05575 -2.0 -4.6 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS08870 -2.0 -2.2 2-isopropylmalate synthase compare
MMJJ_RS06805 -2.0 -3.9 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS01690 -2.0 -3.7 methanogenesis marker 12 protein compare
MMJJ_RS03895 -2.0 -4.0 hydrogenase expression/formation protein HypE compare
MMJJ_RS06185 -2.0 -4.9 cobalamin biosynthesis protein compare
MMJJ_RS03125 -1.9 -4.3 GMC oxidoreductase compare
MMJJ_RS04565 -1.9 -3.3 sirohydrochlorin nickelochelatase compare
MMJJ_RS05070 -1.9 -2.3 DNA primase catalytic subunit PriS compare
MMJJ_RS04150 -1.9 -3.8 DUF5379 domain-containing protein compare
MMJJ_RS06220 -1.9 -5.7 polyamine aminopropyltransferase compare
MMJJ_RS07160 -1.9 -15.1 M20 family metallo-hydrolase compare
MMJJ_RS00425 -1.9 -4.0 hypothetical protein compare
MMJJ_RS06835 -1.9 -11.5 4Fe-4S binding protein compare
MMJJ_RS03115 -1.9 -6.1 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS02275 -1.9 -4.0 nucleotidyltransferase domain-containing protein compare
MMJJ_RS03845 -1.9 -3.1 translation initiation factor IF-2 compare
MMJJ_RS06930 -1.9 -3.4 type II methionyl aminopeptidase compare
MMJJ_RS01830 -1.9 -3.9 tRNA(Ile)(2)-agmatinylcytidine synthase compare
MMJJ_RS04800 -1.8 -7.0 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS06375 -1.8 -3.1 UbiX family flavin prenyltransferase compare
MMJJ_RS07275 -1.8 -2.4 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS03095 -1.8 -2.8 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS01875 -1.8 -5.2 global nitrogen regulator NrpR compare
MMJJ_RS07375 -1.8 -7.8 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMJJ_RS03245 -1.8 -2.1 UMP kinase compare
MMJJ_RS04680 -1.8 -8.9 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMJJ_RS07245 -1.8 -5.3 amidohydrolase family protein compare
MMJJ_RS05935 -1.8 -2.8 Era-like GTP-binding protein compare
MMJJ_RS08620 -1.8 -3.5 DUF373 family protein compare
MMJJ_RS03170 -1.8 -8.7 DUF5612 domain-containing protein compare
MMJJ_RS06915 -1.8 -10.5 helix-turn-helix domain-containing protein compare
MMJJ_RS03765 -1.8 -8.3 hypothetical protein compare
MMJJ_RS02035 -1.8 -8.4 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS06250 -1.8 -2.8 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS00360 -1.8 -2.3 adenosylhomocysteinase compare
MMJJ_RS05295 -1.8 -8.9 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS05330 -1.8 -2.7 DNA polymerase II large subunit compare
MMJJ_RS05065 -1.8 -4.1 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS06010 -1.8 -6.6 hypothetical protein compare
MMJJ_RS01415 -1.7 -2.4 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS03650 -1.7 -5.3 class I SAM-dependent methyltransferase family protein compare
MMJJ_RS04790 -1.7 -3.6 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS07785 -1.7 -2.7 fumarate reductase subunit A compare
MMJJ_RS03785 -1.7 -3.2 hypothetical protein compare
MMJJ_RS02855 -1.7 -8.5 DEAD/DEAH box helicase compare
MMJJ_RS04670 -1.7 -3.4 DUF2117 domain-containing protein compare
MMJJ_RS03150 -1.7 -5.6 2-phospho-L-lactate transferase compare
MMJJ_RS06905 -1.6 -2.8 hypothetical protein compare
MMJJ_RS03060 -1.6 -2.9 methanogenesis marker 7 protein compare
MMJJ_RS07875 -1.6 -2.7 FAD-dependent oxidoreductase compare
MMJJ_RS04650 -1.6 -4.7 nitrogenase iron protein compare
MMJJ_RS00600 -1.6 -3.1 hydroxymethylbilane synthase compare
MMJJ_RS08155 -1.6 -4.8 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS03110 -1.6 -3.8 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS01345 -1.6 -3.4 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS05950 -1.6 -3.5 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS04970 -1.6 -2.0 DUF655 domain-containing protein compare
MMJJ_RS06865 -1.6 -2.5 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS07715 -1.6 -3.3 UbiD family decarboxylase compare
MMJJ_RS00450 -1.6 -2.6 DUF126 domain-containing protein compare
MMJJ_RS02040 -1.6 -2.4 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS03295 -1.6 -10.3 PHP domain-containing protein compare
MMJJ_RS07155 -1.6 -7.7 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS09055 -1.6 -8.1 NFACT family protein compare
MMJJ_RS08250 -1.6 -5.9 hydrogenase maturation peptidase HycI compare
MMJJ_RS00580 -1.6 -2.3 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS00570 -1.5 -1.4 ribonuclease P compare
MMJJ_RS08020 -1.5 -9.1 nucleotidyltransferase domain-containing protein compare
MMJJ_RS05490 -1.5 -2.7 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS08000 -1.5 -9.9 HesA/MoeB/ThiF family protein compare
MMJJ_RS08340 -1.5 -5.0 archaeoflavoprotein AfpA compare
MMJJ_RS06050 -1.5 -8.6 molybdopterin molybdotransferase MoeA compare
MMJJ_RS05540 -1.5 -12.0 LysR family transcriptional regulator compare
MMJJ_RS03660 -1.5 -3.6 DUF447 family protein compare
MMJJ_RS08825 -1.5 -6.0 hypothetical protein compare
MMJJ_RS05225 -1.5 -1.1 Gar1/Naf1 family protein compare
MMJJ_RS04050 -1.5 -2.0 dihydroneopterin aldolase family protein compare
MMJJ_RS05610 -1.5 -3.8 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS01360 -1.5 -2.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS05810 -1.5 -4.9 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS06700 -1.4 -4.9 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS00210 -1.4 -1.6 DUF530 family protein compare
MMJJ_RS07345 -1.4 -6.1 homocysteine biosynthesis protein compare
MMJJ_RS04985 -1.4 -2.0 glutamyl-tRNA reductase compare
MMJJ_RS02190 -1.4 -9.8 molybdopterin biosynthesis protein compare
MMJJ_RS06785 -1.4 -5.3 RNA ligase partner protein compare
MMJJ_RS07370 -1.4 -3.3 tRNA 4-thiouridine(8) synthase ThiI compare
MMJJ_RS08320 -1.4 -2.0 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS04675 -1.4 -5.3 thiamine pyrophosphate-binding protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in rich t1 experiments