Experiment set2IT050 for Burkholderia phytofirmans PsJN

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
BPHYT_RS03725 -4.6 -2.7 serine hydroxymethyltransferase compare
BPHYT_RS03640 -4.0 -6.5 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS23840 -3.1 -3.5 methyltransferase compare
BPHYT_RS16245 -3.1 -5.0 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS16255 -3.0 -7.7 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS09515 -3.0 -5.5 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS16710 -2.8 -2.3 LysR family transcriptional regulator compare
BPHYT_RS03400 -2.3 -1.9 ATP-dependent DNA helicase RecG compare
BPHYT_RS16675 -2.3 -3.3 dihydroorotase compare
BPHYT_RS12465 -2.3 -3.3 inositol monophosphatase compare
BPHYT_RS14865 -2.3 -3.8 UDP-glucose 6-dehydrogenase compare
BPHYT_RS06405 -2.2 -9.6 phosphoribosylamine--glycine ligase compare
BPHYT_RS13605 -2.1 -1.4 tRNA-Pro compare
BPHYT_RS33920 -2.1 -9.2 type II citrate synthase compare
BPHYT_RS23270 -2.0 -2.3 enoyl-CoA hydratase compare
BPHYT_RS09480 -2.0 -2.0 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS16835 -1.8 -5.6 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS02965 -1.8 -3.1 membrane protein compare
BPHYT_RS14845 -1.7 -3.7 cysteine synthase compare
BPHYT_RS23230 -1.7 -2.0 histidine kinase compare
BPHYT_RS16270 -1.7 -4.3 phosphoglycerate kinase compare
BPHYT_RS18340 -1.6 -2.2 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS08565 -1.5 -1.9 dihydroorotate dehydrogenase compare
BPHYT_RS03480 -1.5 -5.0 ferritin compare
BPHYT_RS30795 -1.5 -1.9 short-chain dehydrogenase compare
BPHYT_RS15415 -1.5 -10.6 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS02590 -1.5 -6.3 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS34815 -1.5 -3.0 ABC transporter compare
BPHYT_RS15620 -1.5 -4.0 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS03730 -1.5 -2.6 transcriptional repressor NrdR compare
BPHYT_RS17095 -1.4 -3.7 proline--tRNA ligase compare
BPHYT_RS33610 -1.4 -2.3 DNA polymerase I compare
BPHYT_RS02865 -1.4 -3.0 hypothetical protein compare
BPHYT_RS16840 -1.4 -2.7 transketolase compare
BPHYT_RS19435 -1.4 -4.1 16S rRNA methyltransferase compare
BPHYT_RS21505 -1.4 -1.4 amidohydrolase compare
BPHYT_RS33840 -1.4 -5.5 amidophosphoribosyltransferase compare
BPHYT_RS12845 -1.3 -10.0 ATPase compare
BPHYT_RS18590 -1.3 -1.1 hypothetical protein compare
BPHYT_RS17530 -1.3 -4.8 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS21905 -1.3 -1.4 IclR family transcriptional regulator compare
BPHYT_RS15615 -1.3 -2.2 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS17520 -1.3 -5.2 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS31060 -1.3 -1.7 capsular polysaccharide biosynthesis protein compare
BPHYT_RS09585 -1.3 -2.3 hypothetical protein compare
BPHYT_RS13200 -1.2 -2.2 molybdopterin binding oxidoreductase compare
BPHYT_RS33030 -1.2 -1.2 hypothetical protein compare
BPHYT_RS14855 -1.2 -2.4 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS14245 -1.2 -1.5 membrane protein compare
BPHYT_RS36220 -1.1 -1.3 hypothetical protein compare
BPHYT_RS28285 -1.1 -1.8 MFS transporter compare
BPHYT_RS06175 -1.1 -3.2 LPS biosynthesis compare
BPHYT_RS10135 -1.1 -1.2 hypothetical protein compare
BPHYT_RS21870 -1.1 -1.8 hypothetical protein compare
BPHYT_RS24500 -1.1 -1.9 histidine kinase compare
BPHYT_RS05290 -1.1 -1.1 hypothetical protein compare
BPHYT_RS33155 -1.1 -2.2 hypothetical protein compare
BPHYT_RS33580 -1.1 -3.7 geranyltranstransferase compare
BPHYT_RS25870 -1.1 -1.0 type III secretion system ATPase compare
BPHYT_RS33060 -1.1 -1.4 hypothetical protein compare
BPHYT_RS12925 -1.1 -1.2 exodeoxyribonuclease III compare
BPHYT_RS24585 -1.0 -2.0 NUDIX hydrolase compare
BPHYT_RS16340 -1.0 -5.6 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS16175 -1.0 -1.6 hemolysin D compare
BPHYT_RS33615 -1.0 -2.6 decarboxylase compare
BPHYT_RS06685 -1.0 -1.8 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS01625 -1.0 -2.6 chemotaxis protein CheY compare
BPHYT_RS04370 -1.0 -1.7 glycosyl transferase compare
BPHYT_RS26955 -1.0 -0.9 succinylglutamate desuccinylase compare
BPHYT_RS04720 -1.0 -4.0 transcriptional regulator compare
BPHYT_RS17240 -1.0 -1.1 cell division protein FtsW compare
BPHYT_RS13645 -1.0 -7.9 threonine--tRNA ligase compare
BPHYT_RS34805 -1.0 -4.6 ABC transporter compare
BPHYT_RS29920 -1.0 -1.0 hypothetical protein compare
BPHYT_RS12990 -0.9 -1.8 iron transporter compare
BPHYT_RS06990 -0.9 -1.4 membrane protein compare
BPHYT_RS21340 -0.9 -4.0 2OG-Fe(II) oxygenase compare
BPHYT_RS30085 -0.9 -1.4 hypothetical protein compare
BPHYT_RS15710 -0.9 -1.3 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS34810 -0.9 -3.7 RND transporter compare
BPHYT_RS14135 -0.9 -2.7 phosphate transporter permease subunit PtsA compare
BPHYT_RS00340 -0.9 -2.3 hypothetical protein compare
BPHYT_RS07515 -0.9 -1.4 photosystem reaction center subunit H compare
BPHYT_RS05285 -0.9 -1.3 hypothetical protein compare
BPHYT_RS20830 -0.9 -1.5 electron transfer flavoprotein subunit beta compare
BPHYT_RS23675 -0.9 -1.9 lysine transporter LysE compare
BPHYT_RS09315 -0.9 -0.9 chemotaxis protein CheY compare
BPHYT_RS17805 -0.9 -1.8 hypothetical protein compare
BPHYT_RS04385 -0.9 -2.9 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS27495 -0.9 -1.1 hypothetical protein compare
BPHYT_RS06400 -0.9 -3.0 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS22360 -0.9 -1.5 response regulator receiver compare
BPHYT_RS29085 -0.9 -1.3 LysR family transcriptional regulator compare
BPHYT_RS12725 -0.9 -7.0 regulator compare
BPHYT_RS07350 -0.9 -1.1 ABC transporter ATP-binding protein compare
BPHYT_RS06610 -0.9 -1.1 triosephosphate isomerase compare
BPHYT_RS20235 -0.9 -3.5 iron ABC transporter compare
BPHYT_RS35945 -0.9 -2.0 response regulator receiver compare
BPHYT_RS18260 -0.8 -4.7 phenylacetic acid degradation protein compare
BPHYT_RS24565 -0.8 -1.8 membrane protein compare
BPHYT_RS29110 -0.8 -1.3 DNA-directed DNA polymerase compare
BPHYT_RS21030 -0.8 -1.8 ABC transporter ATP-binding protein compare
BPHYT_RS27175 -0.8 -0.8 DNA-binding protein compare
BPHYT_RS18910 -0.8 -0.9 FlgN compare
BPHYT_RS20245 -0.8 -2.6 iron ABC transporter substrate-binding protein compare
BPHYT_RS03945 -0.8 -1.7 hypothetical protein compare
BPHYT_RS22530 -0.8 -1.4 N5,N10-methylene tetrahydromethanopterin reductase compare
BPHYT_RS08850 -0.8 -1.2 transcriptional regulator compare
BPHYT_RS10670 -0.8 -1.1 catechol 1,2-dioxygenase compare
BPHYT_RS31255 -0.8 -1.1 cytochrome B561 compare
BPHYT_RS12985 -0.8 -1.4 amino acid acetyltransferase compare
BPHYT_RS04965 -0.8 -3.4 ATP-binding protein compare
BPHYT_RS25780 -0.8 -1.0 DeoR faimly transcriptional regulator compare
BPHYT_RS17525 -0.8 -1.1 glutaredoxin compare
BPHYT_RS23430 -0.8 -1.6 bifunctional D-altronate/D-mannonate dehydratase compare
BPHYT_RS36570 -0.8 -1.3 histone compare
BPHYT_RS35100 -0.7 -2.1 ABC transporter substrate-binding protein compare
BPHYT_RS09500 -0.7 -3.0 glucose-6-phosphate isomerase compare
BPHYT_RS05155 -0.7 -1.7 acetyltransferase GCN5 compare
BPHYT_RS07600 -0.7 -1.7 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS20680 -0.7 -1.8 LacI family transcriptional regulator compare
BPHYT_RS03100 -0.7 -1.9 peptidase compare
BPHYT_RS34470 -0.7 -2.4 ABC transporter compare
BPHYT_RS22420 -0.7 -1.1 membrane protein compare
BPHYT_RS23155 -0.7 -1.1 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) compare
BPHYT_RS05730 -0.7 -2.2 hypothetical protein compare
BPHYT_RS28930 -0.7 -0.8 chromosome partitioning protein ParA compare
BPHYT_RS10540 -0.7 -1.2 secretion protein compare
BPHYT_RS36495 -0.7 -2.6 peptidase compare
BPHYT_RS16350 -0.7 -2.6 hypothetical protein compare
BPHYT_RS16345 -0.7 -2.7 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS30350 -0.7 -1.3 LysR family transcriptional regulator compare
BPHYT_RS33695 -0.7 -1.8 molybdenum ABC transporter ATPase compare
BPHYT_RS01485 -0.7 -0.6 histidine kinase compare
BPHYT_RS09330 -0.7 -4.9 phytoene synthase compare
BPHYT_RS14140 -0.7 -1.6 phosphate transporter permease subunit PstC compare
BPHYT_RS24745 -0.7 -1.5 transcriptional regulator compare
BPHYT_RS34780 -0.7 -1.5 phytoene synthase compare
BPHYT_RS19545 -0.7 -2.3 nuclear protein SET compare
BPHYT_RS17100 -0.7 -3.4 RNA pyrophosphohydrolase compare
BPHYT_RS28320 -0.7 -1.4 molecular chaperone DnaJ compare
BPHYT_RS30900 -0.7 -2.0 transcriptional regulator compare
BPHYT_RS26025 -0.7 -0.7 hypothetical protein compare
BPHYT_RS21665 -0.7 -1.6 hypothetical protein compare
BPHYT_RS20155 -0.7 -0.8 hypothetical protein compare
BPHYT_RS27155 -0.7 -1.2 peroxiredoxin compare
BPHYT_RS14380 -0.7 -2.8 elongation factor 4 compare
BPHYT_RS33370 -0.7 -1.4 LysR family transcriptional regulator compare
BPHYT_RS04595 -0.7 -0.9 cytoplasmic protein compare
BPHYT_RS27030 -0.7 -1.2 transcriptional regulator compare
BPHYT_RS30450 -0.7 -0.6 ABC transporter permease compare
BPHYT_RS05645 -0.7 -1.6 hypothetical protein compare
BPHYT_RS29945 -0.7 -1.7 histidine kinase compare
BPHYT_RS05300 -0.7 -2.9 polyketide cyclase compare
BPHYT_RS35885 -0.7 -2.9 hypothetical protein compare
BPHYT_RS08355 -0.7 -1.3 hypothetical protein compare
BPHYT_RS02860 -0.7 -0.8 membrane protein compare
BPHYT_RS29790 -0.7 -2.4 lysine transporter LysE compare
BPHYT_RS16470 -0.7 -2.5 DeoR faimly transcriptional regulator compare
BPHYT_RS30685 -0.7 -1.8 ubiquinol oxidase subunit II, cyanide insensitive compare
BPHYT_RS22340 -0.7 -1.8 methionine sulfoxide reductase A compare
BPHYT_RS02725 -0.7 -1.6 GntR family transcriptional regulator compare
BPHYT_RS17920 -0.7 -1.0 protein CyaY compare
BPHYT_RS33950 -0.7 -4.1 GntR family transcriptional regulator compare
BPHYT_RS26135 -0.7 -1.5 ABC transporter permease compare
BPHYT_RS02135 -0.7 -1.4 glyoxylate reductase compare
BPHYT_RS09620 -0.7 -1.9 aminodeoxychorismate lyase compare
BPHYT_RS35310 -0.7 -0.6 GCN5 family N-acetyltransferase compare
BPHYT_RS26330 -0.7 -1.3 hypothetical protein compare
BPHYT_RS19130 -0.7 -2.0 acetyltransferase compare
BPHYT_RS12060 -0.6 -1.4 hypothetical protein compare
BPHYT_RS04415 -0.6 -1.5 N-acylglucosamine 2-epimerase compare
BPHYT_RS02285 -0.6 -2.3 cell division protein compare
BPHYT_RS01620 -0.6 -4.3 sensor histidine kinase compare
BPHYT_RS35255 -0.6 -1.7 AraC family transcriptional regulator compare
BPHYT_RS28040 -0.6 -2.4 acyl-CoA dehydrogenase compare
BPHYT_RS23445 -0.6 -0.7 hexuronate transporter compare
BPHYT_RS28245 -0.6 -1.2 MFS transporter compare
BPHYT_RS10985 -0.6 -2.0 MFS transporter compare
BPHYT_RS05900 -0.6 -1.8 hypothetical protein compare
BPHYT_RS15950 -0.6 -3.2 tyrosine recombinase XerD compare
BPHYT_RS06760 -0.6 -2.4 3-hydroxyacyl-CoA dehydrogenase compare
BPHYT_RS27920 -0.6 -0.9 tricarballylate utilization protein B compare
BPHYT_RS20990 -0.6 -2.0 phasin compare
BPHYT_RS11480 -0.6 -1.8 heme ABC transporter ATP-binding protein compare
BPHYT_RS09835 -0.6 -0.9 uroporphyrin-III C-methyltransferase compare
BPHYT_RS15290 -0.6 -1.2 tRNA-Arg compare
BPHYT_RS20545 -0.6 -1.1 hypothetical protein compare
BPHYT_RS35535 -0.6 -1.3 arsenic transporter compare
BPHYT_RS17075 -0.6 -1.7 ABC transporter permease compare
BPHYT_RS02365 -0.6 -0.7 hypothetical protein compare
BPHYT_RS05810 -0.6 -2.5 hypothetical protein compare
BPHYT_RS24495 -0.6 -1.4 transcriptional regulator compare
BPHYT_RS20185 -0.6 -1.0 sugar transferase compare
BPHYT_RS09160 -0.6 -2.9 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS07635 -0.6 -1.4 alkanesulfonate monooxygenase compare
BPHYT_RS11010 -0.6 -1.3 chromate transporter compare
BPHYT_RS20835 -0.6 -1.1 pyridoxal 4-dehydrogenase compare
BPHYT_RS14450 -0.6 -2.2 hypothetical protein compare
BPHYT_RS14755 -0.6 -1.8 tRNA (guanine-N(1)-)-methyltransferase compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in lb experiments