Experiment set2IT050 for Burkholderia phytofirmans PsJN

Compare to:

LB

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS28690 +1.3 1.8 diguanylate phosphodiesterase compare
BPHYT_RS32210 +1.2 0.8 hypothetical protein compare
BPHYT_RS06105 +1.2 1.9 hypothetical protein compare
BPHYT_RS32435 +1.1 2.8 formate dehydrogenase-N subunit beta compare
BPHYT_RS21235 +1.0 2.7 hypothetical protein compare
BPHYT_RS18835 +1.0 1.2 flagellar biosynthesis protein FliR compare
BPHYT_RS00380 +1.0 2.6 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS20840 +0.9 2.4 beta-lactamase compare
BPHYT_RS30995 +0.9 1.1 glucose-1-phosphate thymidylyltransferase compare
BPHYT_RS26975 +0.9 1.5 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS23830 +0.9 2.2 acetyl-CoA hydrolase compare
BPHYT_RS13450 +0.9 2.1 GntR family transcriptional regulator compare
BPHYT_RS26525 +0.9 1.7 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS23455 +0.9 1.4 phosphorylase compare
BPHYT_RS02035 +0.9 1.7 hypothetical protein compare
BPHYT_RS31205 +0.9 2.4 peptide ABC transporter ATP-binding protein compare
BPHYT_RS18420 +0.9 2.7 hypothetical protein compare
BPHYT_RS02985 +0.9 2.3 MaoC family dehydratase compare
BPHYT_RS31630 +0.9 2.5 hypothetical protein compare
BPHYT_RS07425 +0.9 1.0 hypothetical protein compare
BPHYT_RS13080 +0.9 1.3 hypothetical protein compare
BPHYT_RS20515 +0.9 2.2 alpha/beta hydrolase compare
BPHYT_RS21445 +0.9 1.4 sugar ABC transporter ATP-binding protein compare
BPHYT_RS16065 +0.9 0.9 LacI family transcriptional regulator compare
BPHYT_RS27330 +0.9 1.5 hypothetical protein compare
BPHYT_RS35230 +0.9 1.9 type 11 methyltransferase compare
BPHYT_RS13555 +0.9 2.0 acyl-CoA dehydrogenase compare
BPHYT_RS25080 +0.9 1.4 glycine/betaine ABC transporter substrate-binding protein compare
BPHYT_RS33905 +0.8 1.9 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS18785 +0.8 1.9 flagellar assembly protein FliH compare
BPHYT_RS27890 +0.8 1.1 hypothetical protein compare
BPHYT_RS19025 +0.8 5.4 transcriptional regulator compare
BPHYT_RS28255 +0.8 1.8 hypothetical protein compare
BPHYT_RS11705 +0.8 1.4 hypothetical protein compare
BPHYT_RS16335 +0.8 1.2 membrane protein compare
BPHYT_RS17265 +0.8 1.3 cell division protein compare
BPHYT_RS28900 +0.7 1.9 2-oxo-hepta-3-ene-1,7-dioic acid hydratase compare
BPHYT_RS00365 +0.7 2.6 ABC transporter substrate-binding protein compare
BPHYT_RS30490 +0.7 0.8 2-haloalkanoic acid dehalogenase compare
BPHYT_RS21790 +0.7 1.3 hypothetical protein compare
BPHYT_RS14605 +0.7 2.3 sodium transporter compare
BPHYT_RS06335 +0.7 1.1 CopG family transcriptional regulator compare
BPHYT_RS01795 +0.7 4.2 histidine kinase compare
BPHYT_RS29855 +0.7 0.9 protein-tyrosine-phosphatase compare
BPHYT_RS08335 +0.7 1.0 hypothetical protein compare
BPHYT_RS07220 +0.7 1.7 GCN5 family acetyltransferase compare
BPHYT_RS07570 +0.7 1.0 hypothetical protein compare
BPHYT_RS32845 +0.7 2.4 ABC transporter substrate-binding protein compare
BPHYT_RS28360 +0.7 1.3 carboxymuconolactone decarboxylase compare
BPHYT_RS26920 +0.7 3.5 major facilitator transporter compare
BPHYT_RS08410 +0.7 0.8 dehydrogenase compare
BPHYT_RS34700 +0.7 3.0 arsenate reductase compare
BPHYT_RS22500 +0.7 1.8 transcriptional regulator compare
BPHYT_RS28680 +0.7 1.2 porin compare
BPHYT_RS24105 +0.7 1.7 chloroperoxidase compare
BPHYT_RS31390 +0.7 2.3 hypothetical protein compare
BPHYT_RS25470 +0.7 1.2 alkylhydroperoxidase compare
BPHYT_RS28620 +0.7 1.7 enoyl-CoA hydratase compare
BPHYT_RS01790 +0.7 5.6 LuxR family transcriptional regulator compare
BPHYT_RS20970 +0.7 1.4 hypothetical protein compare
BPHYT_RS13320 +0.7 0.9 allantoate amidohydrolase compare
BPHYT_RS22930 +0.7 1.2 type II secretion system protein compare
BPHYT_RS25005 +0.7 1.0 FMN reductase compare
BPHYT_RS27850 +0.7 1.3 hemerythrin compare
BPHYT_RS27455 +0.6 1.2 rod shape-determining protein MreB compare
BPHYT_RS24220 +0.6 1.9 alpha/beta hydrolase compare
BPHYT_RS28830 +0.6 0.8 LysR family transcriptional regulator compare
BPHYT_RS21765 +0.6 1.5 IclR family transcriptional regulator compare
BPHYT_RS23100 +0.6 1.3 sugar ABC transporter substrate-binding protein compare
BPHYT_RS32470 +0.6 1.1 membrane protein compare
BPHYT_RS06470 +0.6 1.2 membrane protein compare
BPHYT_RS29065 +0.6 2.0 hypothetical protein compare
BPHYT_RS07085 +0.6 1.3 LysR family transcriptional regulator compare
BPHYT_RS36590 +0.6 2.1 hypothetical protein compare
BPHYT_RS23035 +0.6 0.9 hypothetical protein compare
BPHYT_RS22860 +0.6 0.8 chemotaxis protein CheY compare
BPHYT_RS29015 +0.6 1.4 RND transporter compare
BPHYT_RS07320 +0.6 1.3 dihydrodipicolinate synthetase compare
BPHYT_RS02410 +0.6 1.6 alpha/beta hydrolase compare
BPHYT_RS16445 +0.6 1.2 RNA helicase compare
BPHYT_RS07595 +0.6 1.2 membrane protein compare
BPHYT_RS21465 +0.6 2.3 TetR family transcriptional regulator compare
BPHYT_RS27940 +0.6 2.1 FAD-binding protein compare
BPHYT_RS23990 +0.6 1.0 N-hydroxyarylamine O-acetyltransferase compare
BPHYT_RS02660 +0.6 0.8 membrane protein compare
BPHYT_RS22125 +0.6 3.0 hypothetical protein compare
BPHYT_RS33170 +0.6 1.3 acetyltransferase compare
BPHYT_RS07540 +0.6 0.8 hypothetical protein compare
BPHYT_RS03580 +0.6 1.4 RNA-binding protein S4 compare
BPHYT_RS09860 +0.6 0.7 pilus assembly protein PilP compare
BPHYT_RS27485 +0.6 1.4 NAD-dependent dehydratase compare
BPHYT_RS35445 +0.6 2.2 2-aminobenzoate-CoA ligase [EC: 6.2.1.32] (from data) compare
BPHYT_RS26820 +0.6 1.4 LysR family transcriptional regulator compare
BPHYT_RS28215 +0.6 1.6 D-ribose transporter ATP binding protein compare
BPHYT_RS24205 +0.6 1.3 aldolase compare
BPHYT_RS33680 +0.6 1.5 phosphoesterase compare
BPHYT_RS06020 +0.6 2.5 hypothetical protein compare
BPHYT_RS33400 +0.6 1.5 magnesium transporter CorA compare
BPHYT_RS31515 +0.6 1.4 agmatinase compare
BPHYT_RS28025 +0.6 1.3 3-hydroxyisobutyrate dehydrogenase compare
BPHYT_RS01170 +0.6 1.2 hypothetical protein compare
BPHYT_RS26930 +0.6 2.8 mechanosensitive ion channel protein compare
BPHYT_RS11260 +0.6 1.8 LysR family transcriptional regulator compare
BPHYT_RS26200 +0.6 2.3 acetate kinase compare
BPHYT_RS25075 +0.6 0.8 AraC family transcriptional regulator compare
BPHYT_RS25515 +0.6 1.6 glutathione S-transferase compare
BPHYT_RS07340 +0.6 2.0 glyoxalase compare
BPHYT_RS26950 +0.6 2.4 MFS transporter compare
BPHYT_RS28435 +0.6 2.4 MBL fold metallo-hydrolase compare
BPHYT_RS32240 +0.5 1.0 chromosome replication initiation inhibitor protein compare
BPHYT_RS21215 +0.5 2.3 Crp/Fnr family transcriptional regulator compare
BPHYT_RS10305 +0.5 1.2 hypothetical protein compare
BPHYT_RS03375 +0.5 1.1 NAD(P) transhydrogenase compare
BPHYT_RS30815 +0.5 2.4 2-methylcitrate dehydratase compare
BPHYT_RS06195 +0.5 1.2 membrane protein compare
BPHYT_RS00955 +0.5 1.4 DNA polymerase compare
BPHYT_RS04155 +0.5 1.6 polysaccharide deacetylase compare
BPHYT_RS28575 +0.5 0.7 transcriptional regulator compare
BPHYT_RS03965 +0.5 1.9 GDP-mannose mannosyl hydrolase compare
BPHYT_RS22400 +0.5 1.0 hypothetical protein compare
BPHYT_RS03925 +0.5 1.5 LysR family transcriptional regulator compare
BPHYT_RS26660 +0.5 2.1 precorrin-4 C11-methyltransferase compare
BPHYT_RS08165 +0.5 1.0 pilus assembly protein TadE compare
BPHYT_RS18750 +0.5 2.7 flagellar biosynthetic protein FlhB compare
BPHYT_RS34670 +0.5 2.3 integrase compare
BPHYT_RS09545 +0.5 1.4 peptide methionine sulfoxide reductase compare
BPHYT_RS05610 +0.5 3.1 DNA-cytosine methyltransferase compare
BPHYT_RS10120 +0.5 1.1 membrane protein compare
BPHYT_RS29035 +0.5 1.3 arsenic transporter compare
BPHYT_RS08770 +0.5 1.4 universal stress protein A compare
BPHYT_RS06455 +0.5 1.2 potassium-transporting ATPase C chain compare
BPHYT_RS13170 +0.5 1.5 ATPase compare
BPHYT_RS21050 +0.5 1.5 aldehyde-activating protein compare
BPHYT_RS18795 +0.5 2.4 flagellar export protein FliJ compare
BPHYT_RS09980 +0.5 0.9 TetR family transcriptional regulator compare
BPHYT_RS05355 +0.5 1.8 Crp/Fnr family transcriptional regulator compare
BPHYT_RS11930 +0.5 1.2 3-hydroxybutyrate dehydrogenase compare
BPHYT_RS36245 +0.5 1.0 hypothetical protein compare
BPHYT_RS13420 +0.5 1.9 hypothetical protein compare
BPHYT_RS18745 +0.5 2.3 coniferyl aldehyde dehydrogenase compare
BPHYT_RS24935 +0.5 2.1 cysteinyl-tRNA synthetase compare
BPHYT_RS13810 +0.5 1.9 type VI secretion protein compare
BPHYT_RS32930 +0.5 1.1 NADPH:quinone reductase and related Zn-dependent oxidoreductase-like protein compare
BPHYT_RS25590 +0.5 1.5 FAD-dependent pyridine nucleotide-disulfide oxidoreductase compare
BPHYT_RS25370 +0.5 1.3 acyl-CoA dehydrogenase compare
BPHYT_RS27195 +0.5 1.5 LacI family transcriptional regulator compare
BPHYT_RS33175 +0.5 1.4 hypothetical protein compare
BPHYT_RS04940 +0.5 1.9 hypothetical protein compare
BPHYT_RS14920 +0.5 1.7 hypothetical protein compare
BPHYT_RS08250 +0.5 1.4 hypothetical protein compare
BPHYT_RS34745 +0.5 0.7 hypothetical protein compare
BPHYT_RS31065 +0.5 1.4 polysaccharide biosynthesis protein compare
BPHYT_RS22470 +0.5 0.8 hydrolase compare
BPHYT_RS11990 +0.5 1.8 hypothetical protein compare
BPHYT_RS21780 +0.5 2.1 MFS transporter compare
BPHYT_RS25270 +0.5 1.0 multidrug MFS transporter compare
BPHYT_RS08000 +0.5 1.2 antibiotic biosynthesis monooxygenase compare
BPHYT_RS20190 +0.5 2.0 membrane protein compare
BPHYT_RS10900 +0.5 1.2 histidine kinase compare
BPHYT_RS26775 +0.5 0.6 chemotaxis protein CheB compare
BPHYT_RS17700 +0.5 1.5 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS09040 +0.5 1.5 MerR family transcriptional regulator compare
BPHYT_RS22925 +0.5 1.6 pilus assembly protein TadB compare
BPHYT_RS35645 +0.5 2.8 porin compare
BPHYT_RS31460 +0.5 1.0 hypothetical protein compare
BPHYT_RS05385 +0.5 1.7 short-chain dehydrogenase compare
BPHYT_RS07900 +0.5 1.0 hypothetical protein compare
BPHYT_RS00145 +0.5 1.9 hypothetical protein compare
BPHYT_RS20280 +0.5 1.1 hypothetical protein compare
BPHYT_RS35425 +0.5 2.7 AraC family transcriptional regulator compare
BPHYT_RS13275 +0.5 1.4 methyltransferase compare
BPHYT_RS29310 +0.5 1.9 oxidoreductase compare
BPHYT_RS31290 +0.5 1.7 histidine kinase compare
BPHYT_RS10240 +0.5 0.6 translation initiation inhibitor compare
BPHYT_RS08415 +0.5 1.2 hypothetical protein compare
BPHYT_RS21805 +0.5 1.5 transcriptional regulator compare
BPHYT_RS29975 +0.5 1.2 multidrug ABC transporter ATP-binding protein compare
BPHYT_RS21850 +0.5 1.5 pyrimidine reductase compare
BPHYT_RS09780 +0.5 3.0 polysaccharide biosynthesis protein compare
BPHYT_RS18780 +0.5 4.1 flagellar motor switch protein FliG compare
BPHYT_RS20160 +0.5 1.6 hypothetical protein compare
BPHYT_RS28185 +0.5 1.6 lipase compare
BPHYT_RS09725 +0.5 2.1 exopolysaccharide biosynthesis protein compare
BPHYT_RS00740 +0.5 0.9 hypothetical protein compare
BPHYT_RS18895 +0.5 1.5 flagellar basal body rod protein FlgB compare
BPHYT_RS26490 +0.5 0.7 hypothetical protein compare
BPHYT_RS11980 +0.5 1.4 LysR family transcriptional regulator compare
BPHYT_RS18965 +0.5 0.7 chemotaxis protein CheY compare
BPHYT_RS15840 +0.5 1.8 Clp protease proteolytic subunit ClpP compare
BPHYT_RS03065 +0.5 1.0 LuxR family transcriptional regulator compare
BPHYT_RS25565 +0.5 1.3 hypothetical protein compare
BPHYT_RS11040 +0.5 0.7 GntR family transcriptional regulator compare
BPHYT_RS27845 +0.5 2.4 beta-lactamase compare
BPHYT_RS06385 +0.5 1.7 ribosomal RNA large subunit methyltransferase H compare
BPHYT_RS10645 +0.5 0.8 cyanate hydratase compare
BPHYT_RS13470 +0.5 0.6 arylsulfate sulfotransferase compare
BPHYT_RS08795 +0.5 1.9 sulfate/thiosulfate transporter subunit compare
BPHYT_RS26995 +0.5 2.0 peptidase S10 compare
BPHYT_RS24820 +0.5 2.1 cobyrinic acid a,c-diamide synthase compare
BPHYT_RS26530 +0.5 1.2 amino acid dehydrogenase compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in lb experiments