Experiment set2IT049 for Ralstonia sp. UNC404CL21Col

Compare to:

Glycerol carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS08630 -8.2 -12.5 dihydroorotase compare
ABZR87_RS09465 -6.4 -6.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS14500 -6.3 -15.2 tryptophan synthase subunit beta compare
ABZR87_RS14505 -6.3 -7.4 phosphoribosylanthranilate isomerase compare
ABZR87_RS14540 -6.1 -8.9 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS01810 -6.1 -5.8 glutamate 5-kinase compare
ABZR87_RS22910 -6.0 -4.1 6-phosphogluconolactonase compare
ABZR87_RS07360 -6.0 -16.9 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS00210 -6.0 -8.2 nitrite/sulfite reductase compare
ABZR87_RS02155 -5.9 -10.7 anthranilate phosphoribosyltransferase compare
ABZR87_RS02570 -5.9 -26.5 glutamate synthase-related protein compare
ABZR87_RS02565 -5.8 -6.9 glutamate synthase subunit beta compare
ABZR87_RS02160 -5.7 -8.7 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS08625 -5.7 -3.9 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS02640 -5.7 -17.8 diaminopimelate decarboxylase compare
ABZR87_RS16140 -5.6 -20.1 phosphoenolpyruvate carboxylase compare
ABZR87_RS14530 -5.6 -10.0 3-isopropylmalate dehydrogenase compare
ABZR87_RS09445 -5.4 -15.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS16170 -5.3 -8.1 argininosuccinate lyase compare
ABZR87_RS03020 -5.3 -20.4 glycerol-3-phosphate dehydrogenase compare
ABZR87_RS13250 -5.3 -4.6 phosphoserine phosphatase SerB compare
ABZR87_RS02595 -5.3 -9.9 shikimate kinase compare
ABZR87_RS00835 -5.2 -5.1 argininosuccinate synthase compare
ABZR87_RS05200 -5.2 -21.3 homoserine O-acetyltransferase compare
ABZR87_RS07380 -5.2 -18.6 FAD/FMN-binding oxidoreductase compare
ABZR87_RS00200 -5.2 -4.7 phosphoadenylyl-sulfate reductase compare
ABZR87_RS13790 -5.1 -12.7 chorismate synthase compare
ABZR87_RS02140 -5.1 -21.6 anthranilate synthase component I compare
ABZR87_RS22920 -5.1 -6.9 phosphogluconate dehydratase compare
ABZR87_RS14535 -5.0 -8.3 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS00190 -5.0 -13.9 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS05170 -4.8 -3.3 acetylglutamate kinase compare
ABZR87_RS09450 -4.8 -8.1 prephenate dehydratase compare
ABZR87_RS14490 -4.7 -13.6 tryptophan synthase subunit alpha compare
ABZR87_RS07050 -4.7 -3.2 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS02590 -4.7 -11.5 3-dehydroquinate synthase compare
ABZR87_RS00185 -4.7 -4.6 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS09935 -4.7 -6.4 amino acid aminotransferase compare
ABZR87_RS22970 -4.7 -12.2 cystathionine gamma-synthase family protein compare
ABZR87_RS04865 -4.5 -6.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS05100 -4.5 -11.1 RNA polymerase-binding protein DksA compare
ABZR87_RS02145 -4.5 -4.3 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS05590 -4.4 -5.9 orotate phosphoribosyltransferase compare
ABZR87_RS12790 -4.2 -6.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS14950 -4.1 -4.5 acetolactate synthase small subunit compare
ABZR87_RS00435 -3.9 -13.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS03055 -3.9 -8.7 glycerol kinase GlpK conserved
ABZR87_RS03050 -3.7 -16.6 ABC transporter substrate-binding protein conserved
ABZR87_RS00195 -3.6 -3.1 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS14955 -3.6 -4.3 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS11440 -3.5 -8.8 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS06645 -3.4 -4.0 TlpA disulfide reductase family protein compare
ABZR87_RS13175 -3.3 -3.2 tRNA-Leu compare
ABZR87_RS12785 -3.3 -10.7 endopeptidase La compare
ABZR87_RS08700 -3.0 -13.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS00285 -3.0 -2.9 acetylornithine transaminase compare
ABZR87_RS14115 -3.0 -6.9 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS07665 -2.9 -13.1 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS22915 -2.9 -10.2 glucose-6-phosphate dehydrogenase compare
ABZR87_RS08695 -2.9 -14.9 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS07035 -2.9 -11.8 RNase adapter RapZ compare
ABZR87_RS00205 -2.8 -3.6 DUF934 domain-containing protein compare
ABZR87_RS01110 -2.7 -9.8 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS12795 -2.4 -6.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS12800 -2.4 -7.1 trigger factor compare
ABZR87_RS09515 -2.4 -2.3 cysteine synthase CysM compare
ABZR87_RS02480 -2.4 -2.3 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS00220 -2.3 -7.4 CysB family HTH-type transcriptional regulator compare
ABZR87_RS10610 -2.3 -2.3 inositol monophosphatase family protein compare
ABZR87_RS07675 -2.3 -11.6 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS03025 -2.3 -8.9 ABC transporter ATP-binding protein conserved
ABZR87_RS01645 -2.1 -5.2 type II 3-dehydroquinate dehydratase compare
ABZR87_RS16185 -2.0 -2.7 dCTP deaminase compare
ABZR87_RS16960 -2.0 -4.6 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS10785 -1.9 -6.4 exodeoxyribonuclease V subunit beta compare
ABZR87_RS06495 -1.9 -3.5 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS16180 -1.8 -4.3 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS10620 -1.8 -2.2 serine O-acetyltransferase compare
ABZR87_RS15440 -1.8 -3.7 ribonuclease G compare
ABZR87_RS07635 -1.7 -2.9 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS01145 -1.7 -3.3 glycolate oxidase subunit GlcE compare
ABZR87_RS03040 -1.7 -5.9 carbohydrate ABC transporter permease conserved
ABZR87_RS08640 -1.7 -5.7 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS10780 -1.7 -4.3 PD-(D/E)XK nuclease family protein compare
ABZR87_RS01135 -1.7 -9.5 FAD-linked oxidase C-terminal domain-containing protein compare
ABZR87_RS03035 -1.7 -5.0 sugar ABC transporter permease compare
ABZR87_RS07620 -1.6 -3.7 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS02445 -1.6 -7.9 Sec-independent protein translocase protein TatB compare
ABZR87_RS11000 -1.6 -7.1 transaldolase compare
ABZR87_RS06715 -1.5 -3.5 PTS sugar transporter subunit IIA compare
ABZR87_RS01225 -1.5 -4.1 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS13300 -1.5 -7.2 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS07100 -1.5 -5.9 DJ-1/PfpI family protein conserved
ABZR87_RS14965 -1.5 -4.7 DUF3619 family protein compare
ABZR87_RS02655 -1.5 -9.7 anti-sigma factor compare
ABZR87_RS07625 -1.4 -2.9 Holliday junction branch migration protein RuvA compare
ABZR87_RS05065 -1.4 -3.8 tyrosine recombinase XerC compare
ABZR87_RS16125 -1.4 -6.5 heme biosynthesis protein HemY compare
ABZR87_RS10240 -1.3 -2.2 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS00215 -1.3 -3.2 sulfite exporter TauE/SafE family protein compare
ABZR87_RS10400 -1.3 -2.7 hypothetical protein compare
ABZR87_RS06400 -1.3 -9.4 response regulator transcription factor compare
ABZR87_RS07020 -1.3 -9.0 dynamin-like GTPase family protein compare
ABZR87_RS03030 -1.3 -3.8 ABC transporter ATP-binding protein compare
ABZR87_RS13475 -1.3 -7.0 PAS domain S-box protein compare
ABZR87_RS01150 -1.2 -6.6 glycolate oxidase subunit GlcF compare
ABZR87_RS02385 -1.2 -4.7 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS10980 -1.2 -2.4 tRNA-Leu compare
ABZR87_RS21795 -1.2 -3.5 NUDIX domain-containing protein compare
ABZR87_RS06845 -1.2 -6.5 heme o synthase compare
ABZR87_RS08070 -1.2 -2.4 pyruvate kinase compare
ABZR87_RS02375 -1.2 -8.5 cytochrome c1 compare
ABZR87_RS07095 -1.2 -3.8 ribbon-helix-helix domain-containing protein compare
ABZR87_RS04995 -1.2 -3.5 DNA topoisomerase III compare
ABZR87_RS09460 -1.2 -4.8 prephenate dehydrogenase compare
ABZR87_RS02440 -1.1 -7.8 twin-arginine translocase subunit TatC compare
ABZR87_RS02680 -1.1 -8.4 c-type cytochrome compare
ABZR87_RS08645 -1.1 -1.3 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS02380 -1.1 -8.8 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS16735 -1.1 -9.6 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS03180 -1.1 -2.1 hypothetical protein compare
ABZR87_RS16730 -1.1 -5.0 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS06810 -1.1 -5.9 cytochrome c oxidase assembly protein compare
ABZR87_RS07705 -1.0 -3.0 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS04125 -1.0 -4.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS01640 -1.0 -3.0 TlpA disulfide reductase family protein compare
ABZR87_RS06385 -1.0 -7.3 CHASE3 domain-containing protein compare
ABZR87_RS01615 -1.0 -1.3 RNB domain-containing ribonuclease compare
ABZR87_RS14575 -0.9 -2.9 GntR family transcriptional regulator compare
ABZR87_RS11815 -0.9 -5.7 [protein-PII] uridylyltransferase compare
ABZR87_RS10070 -0.9 -2.5 gephyrin-like molybdotransferase Glp compare
ABZR87_RS07470 -0.9 -4.7 TetR/AcrR family transcriptional regulator compare
ABZR87_RS01800 -0.9 -4.1 RNA pyrophosphohydrolase compare
ABZR87_RS16130 -0.9 -4.1 fused uroporphyrinogen-III synthase HemD/membrane protein HemX compare
ABZR87_RS06840 -0.9 -4.7 COX15/CtaA family protein compare
ABZR87_RS14970 -0.8 -2.6 DUF3106 domain-containing protein compare
ABZR87_RS14235 -0.8 -5.2 formyltetrahydrofolate deformylase compare
ABZR87_RS06795 -0.8 -5.8 cytochrome c oxidase subunit II compare
ABZR87_RS10085 -0.8 -1.8 Rne/Rng family ribonuclease compare
ABZR87_RS07700 -0.8 -2.0 peptidylprolyl isomerase compare
ABZR87_RS16655 -0.8 -4.7 GntR family transcriptional regulator compare
ABZR87_RS16165 -0.8 -0.9 anti-sigma factor compare
ABZR87_RS09080 -0.8 -3.5 phage holin family protein compare
ABZR87_RS06695 -0.8 -3.0 P-II family nitrogen regulator compare
ABZR87_RS23325 -0.8 -3.6 hypothetical protein compare
ABZR87_RS04945 -0.8 -1.6 DUF4390 domain-containing protein compare
ABZR87_RS02575 -0.8 -2.7 transposase compare
ABZR87_RS20730 -0.8 -0.8 hypothetical protein compare
ABZR87_RS11375 -0.8 -5.4 inorganic phosphate transporter compare
ABZR87_RS06800 -0.7 -6.4 cytochrome c oxidase subunit I compare
ABZR87_RS11435 -0.7 -2.0 Mth938-like domain-containing protein compare
ABZR87_RS00970 -0.7 -1.6 molecular chaperone DnaJ compare
ABZR87_RS03665 -0.7 -3.2 MarR family transcriptional regulator compare
ABZR87_RS11125 -0.7 -3.3 cell division protein ZapE compare
ABZR87_RS22690 -0.7 -1.9 XRE family transcriptional regulator compare
ABZR87_RS05205 -0.7 -3.2 methionine biosynthesis protein MetW compare
ABZR87_RS15405 -0.7 -2.0 YebC/PmpR family DNA-binding transcriptional regulator compare
ABZR87_RS17310 -0.7 -3.6 PadR family transcriptional regulator compare
ABZR87_RS05060 -0.7 -2.3 DUF484 family protein compare
ABZR87_RS16250 -0.7 -2.7 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS06820 -0.7 -4.2 cytochrome c oxidase subunit 3 compare
ABZR87_RS09085 -0.7 -4.2 DUF883 family protein compare
ABZR87_RS17845 -0.7 -2.3 Crp/Fnr family transcriptional regulator compare
ABZR87_RS05140 -0.6 -1.1 ATP-binding protein compare
ABZR87_RS21285 -0.6 -1.8 TetR/AcrR family transcriptional regulator compare
ABZR87_RS06405 -0.6 -0.7 hypothetical protein compare
ABZR87_RS15250 -0.6 -4.1 PP2C family serine/threonine-protein phosphatase compare
ABZR87_RS05010 -0.6 -2.1 rod shape-determining protein RodA compare
ABZR87_RS13415 -0.6 -3.5 IclR family transcriptional regulator compare
ABZR87_RS10520 -0.6 -3.7 3',5'-nucleoside bisphosphate phosphatase compare
ABZR87_RS11370 -0.6 -1.8 DUF47 domain-containing protein compare
ABZR87_RS09700 -0.6 -2.0 DEAD/DEAH box helicase compare
ABZR87_RS09960 -0.6 -3.1 ABC transporter permease compare
ABZR87_RS12130 -0.6 -1.5 LysR substrate-binding domain-containing protein compare
ABZR87_RS23095 -0.6 -0.8 MarR family transcriptional regulator compare
ABZR87_RS01035 -0.6 -2.8 histidine utilization repressor compare
ABZR87_RS04160 -0.6 -1.6 LysR family transcriptional regulator compare
ABZR87_RS23265 -0.6 -2.2 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS15305 -0.6 -1.0 pyroglutamyl-peptidase I compare
ABZR87_RS06835 -0.6 -3.0 cytochrome c oxidase subunit I compare
ABZR87_RS02075 -0.6 -0.9 23S ribosomal RNA compare
ABZR87_RS08580 -0.6 -2.2 response regulator compare
ABZR87_RS16225 -0.6 -1.5 twin-arginine translocation signal domain-containing protein compare
ABZR87_RS21815 -0.6 -0.7 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS21700 -0.6 -1.5 hypothetical protein compare
ABZR87_RS09895 -0.6 -0.8 DUF1841 family protein compare
ABZR87_RS06830 -0.6 -3.6 SURF1 family protein compare
ABZR87_RS05120 -0.6 -3.1 ATP-dependent protease ATPase subunit HslU compare
ABZR87_RS14455 -0.6 -1.7 nodulation factor ABC transporter ATP-binding protein NodI compare
ABZR87_RS06295 -0.5 -2.6 acyl-CoA dehydrogenase family protein compare
ABZR87_RS12330 -0.5 -1.4 hypothetical protein compare
ABZR87_RS11925 -0.5 -3.9 phosphoenolpyruvate synthase compare
ABZR87_RS01270 -0.5 -3.5 ATP-dependent DNA helicase RecG compare
ABZR87_RS20370 -0.5 -0.7 ABC transporter ATP-binding protein compare
ABZR87_RS00100 -0.5 -0.6 hypothetical protein compare
ABZR87_RS02850 -0.5 -2.2 elongation factor Tu compare
ABZR87_RS19070 -0.5 -1.3 MFS transporter compare
ABZR87_RS19035 -0.5 -2.0 response regulator compare
ABZR87_RS17995 -0.5 -1.4 chemotaxis response regulator CheY compare
ABZR87_RS15705 -0.5 -1.6 UvrD-helicase domain-containing protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Glycerol in Ralstonia sp. UNC404CL21Col

For carbon source Glycerol across organisms