Experiment set2IT049 for Bifidobacterium breve UCC2003

Compare to:

CDM1

200 most important genes:

  gene name fitness t score description  
BBR_RS13040 -7.1 -4.9 CHAP domain-containing protein compare
BBR_RS10445 -6.9 -12.5 HlyC/CorC family transporter compare
BBR_RS18570 -6.7 -9.2 phosphoserine transaminase compare
BBR_RS18955 -6.6 -12.6 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
BBR_RS17375 -6.5 -4.5 amino acid ABC transporter ATP-binding protein compare
BBR_RS17990 -6.5 -11.8 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase compare
BBR_RS11015 -6.5 -13.3 aspartate kinase compare
BBR_RS11025 -6.4 -20.3 aspartate-semialdehyde dehydrogenase compare
BBR_RS19240 -6.4 -18.9 LacI family transcriptional regulator compare
BBR_RS13030 -6.4 -6.2 cell division ATP-binding protein FtsE compare
BBR_RS13035 -6.3 -3.5 ABC transporter permease compare
BBR_RS18735 -6.3 -19.9 hypothetical protein compare
BBR_RS19700 -6.2 -33.5 ATP-dependent chaperone ClpB compare
BBR_RS19535 -6.2 -12.7 homoserine kinase (EC 2.7.1.39) (from data) compare
BBR_RS10660 -6.2 -29.0 esterase compare
BBR_RS11020 -6.2 -17.0 ACT domain-containing protein compare
BBR_RS16540 -6.2 -6.0 XRE family transcriptional regulator compare
BBR_RS19475 -6.0 -23.1 AEC family transporter compare
BBR_RS19760 -6.0 -3.0 polysaccharide ABC transporter ATPase compare
BBR_RS14210 -5.9 -3.3 hypothetical protein compare
BBR_RS15680 -5.9 -5.7 succinate--CoA ligase subunit alpha compare
BBR_RS12460 -5.8 -4.0 LacI family DNA-binding transcriptional regulator compare
BBR_RS18690 -5.7 -7.9 diacylglycerol kinase compare
BBR_RS19355 -5.7 -2.5 tRNA-Gly compare
BBR_RS16970 -5.7 -6.8 phosphoglycerate dehydrogenase compare
BBR_RS17365 -5.7 -6.7 ABC transporter permease compare
BBR_RS12235 -5.6 -1.4 hypothetical protein compare
BBR_RS18695 -5.6 -3.9 PRD domain-containing protein compare
BBR_RS10555 -5.6 -2.0 DUF3073 domain-containing protein compare
BBR_RS19945 -5.6 -12.9 MarR family transcriptional regulator compare
BBR_RS16750 -5.5 -5.9 ParA family protein compare
BBR_RS10900 -5.5 -3.7 molecular chaperone DnaK compare
BBR_RS17615 -5.4 -12.3 phosphoserine phosphatase SerB compare
BBR_RS19740 -5.3 -25.6 DUF2142 domain-containing protein compare
BBR_RS17460 -5.3 -11.2 TPM domain-containing protein compare
BBR_RS16820 -5.2 -4.5 RNA polymerase sigma factor RpoE compare
BBR_RS14205 -5.2 -6.8 hypothetical protein compare
BBR_RS15675 -5.1 -9.2 ADP-forming succinate--CoA ligase subunit beta compare
BBR_RS17370 -5.1 -11.4 ABC transporter substrate-binding protein compare
BBR_RS11210 -5.1 -5.0 phosphoenolpyruvate--protein phosphotransferase compare
BBR_RS16675 -5.0 -3.4 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS16600 -5.0 -11.6 aconitate hydratase AcnA compare
BBR_RS11505 -4.9 -22.2 TetR/AcrR family transcriptional regulator compare
BBR_RS15170 -4.9 -10.0 HlyC/CorC family transporter compare
BBR_RS19905 -4.9 -1.3 methionine--tRNA ligase compare
BBR_RS11595 -4.9 -6.9 50S ribosomal protein L9 compare
BBR_RS11540 -4.8 -3.9 DUF1727 domain-containing protein compare
BBR_RS10625 -4.8 -2.4 FHA domain-containing protein compare
BBR_RS14070 -4.7 -5.6 threonine synthase (EC 4.2.3.1) (from data) compare
BBR_RS11205 -4.7 -3.7 HPr family phosphocarrier protein compare
BBR_RS12375 -4.7 -2.0 pantetheine-phosphate adenylyltransferase compare
BBR_RS12995 -4.6 -8.6 4-hydroxy-tetrahydrodipicolinate synthase compare
BBR_RS18725 -4.6 -5.2 ribonuclease HI compare
BBR_RS15085 -4.6 -2.0 3-dehydroquinate synthase compare
BBR_RS11720 -4.6 -9.0 DUF2469 domain-containing protein compare
BBR_RS12710 -4.6 -5.7 hypothetical protein compare
BBR_RS19120 -4.5 -16.6 helicase compare
BBR_RS16155 -4.5 -10.4 isocitrate dehydrogenase (NADP(+)) compare
BBR_RS15070 -4.4 -3.1 endolytic transglycosylase MltG compare
BBR_RS14215 -4.4 -5.2 peptidase compare
BBR_RS18700 -4.4 -11.6 PTS beta-glucoside transporter subunit EIIBCA compare
BBR_RS14365 -4.3 -9.6 hypothetical protein compare
BBR_RS16255 -4.2 -2.9 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
BBR_RS16965 -4.2 -2.9 ATP-dependent DNA helicase compare
BBR_RS19190 -4.2 -10.0 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS15180 -4.1 -9.6 long-chain fatty acid--CoA ligase compare
BBR_RS15080 -4.1 -2.7 chorismate synthase compare
BBR_RS10620 -4.1 -5.5 phosphoprotein phosphatase compare
BBR_RS14625 -4.1 -9.1 pyrroline-5-carboxylate reductase compare
BBR_RS13740 -4.0 -6.0 DUF3052 domain-containing protein compare
BBR_RS20430 -4.0 -7.7 hypothetical protein compare
BBR_RS13700 -4.0 -14.3 diaminopimelate epimerase compare
BBR_RS16605 -4.0 -9.3 hypothetical protein compare
BBR_RS19265 -4.0 -13.9 pyrrolidone-carboxylate peptidase compare
BBR_RS10910 -3.9 -16.7 molecular chaperone DnaJ compare
BBR_RS20465 -3.9 -10.8 chromosome partitioning protein compare
BBR_RS12900 -3.9 -3.2 DeoR/GlpR transcriptional regulator compare
BBR_RS17290 -3.9 -9.7 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS16555 -3.9 -1.0 DNA translocase FtsK compare
BBR_RS14260 -3.9 -1.4 ABC transporter ATP-binding protein compare
BBR_RS13125 -3.9 -1.3 ABC transporter permease compare
BBR_RS19470 -3.8 -21.2 succinyl-diaminopimelate desuccinylase compare
BBR_RS12545 -3.8 -3.7 DUF4012 domain-containing protein compare
BBR_RS19555 -3.8 -26.0 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
BBR_RS20910 -3.8 -2.3 DUF1829 domain-containing protein compare
BBR_RS17135 -3.7 -2.3 RluA family pseudouridine synthase compare
BBR_RS16670 -3.7 -4.6 hypothetical protein compare
BBR_RS12660 -3.6 -10.1 EpsG family protein compare
BBR_RS16425 -3.6 -3.2 DUF3071 domain-containing protein compare
BBR_RS17905 -3.5 -23.3 2-hydroxyglutaryl-CoA dehydratase activator compare
BBR_RS14370 -3.5 -3.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS19165 -3.5 -2.3 phosphate ABC transporter substrate-binding protein PstS compare
BBR_RS20935 -3.5 -2.5 hypothetical protein compare
BBR_RS16220 -3.5 -0.9 DNA cytosine methyltransferase compare
BBR_RS19540 -3.4 -4.0 homoserine dehydrogenase compare
BBR_RS14655 -3.4 -6.7 AraC family transcriptional regulator compare
BBR_RS20920 -3.3 -5.0 hypothetical protein compare
BBR_RS16430 -3.3 -3.5 nucleotide pyrophosphatase compare
BBR_RS14265 -3.3 -5.6 Solute-binding protein of ABC transporter system for metals compare
BBR_RS19755 -3.3 -15.2 glycosyl transferase compare
BBR_RS11515 -3.3 -15.9 ammonium transporter compare
BBR_RS12760 -3.3 -8.1 hypothetical protein compare
BBR_RS15520 -3.2 -3.8 shikimate 5-dehydrogenase compare
BBR_RS16975 -3.2 -5.7 transcriptional repressor NrdR compare
BBR_RS15805 -3.2 -7.9 prolipoprotein diacylglyceryl transferase compare
BBR_RS19125 -3.1 -11.7 hypothetical protein compare
BBR_RS16940 -3.1 -3.3 hypothetical protein compare
BBR_RS16610 -3.1 -3.6 hypothetical protein compare
BBR_RS12905 -3.1 -3.4 galactose-1-phosphate uridylyltransferase compare
BBR_RS19645 -3.0 -10.9 RNA degradosome polyphosphate kinase compare
BBR_RS13490 -3.0 -1.1 30S ribosomal protein S7 compare
BBR_RS15090 -3.0 -1.1 type II 3-dehydroquinate dehydratase compare
BBR_RS14660 -2.9 -2.0 transcriptional regulator compare
BBR_RS14330 -2.9 -2.0 glycogen debranching enzyme GlgX compare
BBR_RS20450 -2.9 -16.0 murein biosynthesis integral membrane protein MurJ compare
BBR_RS12635 -2.9 -15.3 polysaccharide biosynthesis protein compare
BBR_RS14230 -2.9 -8.1 HAMP domain-containing histidine kinase compare
BBR_RS17360 -2.8 -5.0 amino acid ABC transporter permease compare
BBR_RS11470 -2.8 -1.3 6-phosphogluconolactonase compare
BBR_RS15845 -2.8 -1.0 hypothetical protein compare
BBR_RS12705 -2.8 -12.5 hypothetical protein compare
BBR_RS19155 -2.7 -7.8 phosphate ABC transporter, permease protein PstA compare
BBR_RS11500 -2.7 -10.8 glycosyltransferase family 2 protein compare
BBR_RS12640 -2.7 -11.6 glycosyl transferase compare
BBR_RS17640 -2.6 -2.7 DNA-directed RNA polymerase subunit omega compare
BBR_RS12810 -2.6 -9.5 hypothetical protein compare
BBR_RS20925 -2.6 -1.3 amino acid permease compare
BBR_RS13805 -2.5 -2.2 hypothetical protein compare
BBR_RS13835 -2.5 -8.6 FAD-dependent oxidoreductase compare
BBR_RS12630 -2.5 -15.1 glycosyltransferase family 1 protein compare
BBR_RS15455 -2.5 -1.4 orotate phosphoribosyltransferase compare
BBR_RS11770 -2.5 -3.9 chorismate mutase compare
BBR_RS11680 -2.5 -12.2 23S rRNA methyltransferase compare
BBR_RS15425 -2.5 -2.3 aspartate carbamoyltransferase compare
BBR_RS12770 -2.5 -3.7 hypothetical protein compare
BBR_RS18745 -2.4 -1.5 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS11355 -2.4 -5.3 hypothetical protein compare
BBR_RS14075 -2.4 -7.0 glutamate-5-semialdehyde dehydrogenase compare
BBR_RS10615 -2.4 -4.9 FtsW/RodA/SpoVE family cell cycle protein compare
BBR_RS19160 -2.4 -1.4 phosphate ABC transporter permease subunit PstC compare
BBR_RS11220 -2.3 -11.6 YbhB/YbcL family Raf kinase inhibitor-like protein compare
BBR_RS17455 -2.3 -5.7 DNA-binding response regulator compare
BBR_RS14540 -2.3 -4.5 Na+/H+ antiporter NhaA compare
BBR_RS20725 -2.2 -4.4 hypothetical protein compare
BBR_RS14665 -2.2 -7.1 MATE family efflux transporter compare
BBR_RS16905 -2.2 -4.5 hypothetical protein compare
BBR_RS19390 -2.2 -1.7 hypothetical protein compare
BBR_RS13910 -2.2 -1.3 arginine repressor compare
BBR_RS20930 -2.2 -1.6 hypothetical protein compare
BBR_RS15130 -2.2 -1.5 metal-sulfur cluster assembly factor compare
BBR_RS10720 -2.2 -11.1 PDZ domain-containing protein compare
BBR_RS18180 -2.2 -8.3 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS12700 -2.2 -7.4 hypothetical protein compare
BBR_RS14190 -2.2 -7.4 transcriptional regulator compare
BBR_RS20690 -2.2 -2.0 hypothetical protein compare
BBR_RS19370 -2.1 -5.1 type I polyketide synthase compare
BBR_RS20460 -2.1 -5.8 chromosome partitioning protein ParB compare
BBR_RS19095 -2.1 -8.9 magnesium transporter compare
BBR_RS13770 -2.1 -2.3 DNA repair protein RecO compare
BBR_RS19050 -2.1 -14.2 succinyldiaminopimelate transaminase compare
BBR_RS17495 -2.1 -8.7 DUF58 domain-containing protein compare
BBR_RS19260 -2.1 -13.7 hypothetical protein compare
BBR_RS17720 -2.0 -9.6 CRISPR-associated helicase/endonuclease Cas3 compare
BBR_RS13735 -2.0 -1.1 Lon protease compare
BBR_RS12645 -2.0 -5.3 acyltransferase compare
BBR_RS12855 -2.0 -3.7 glycine cleavage system protein H compare
BBR_RS18555 -2.0 -8.4 NlpC/P60 family protein compare
BBR_RS12975 -2.0 -10.2 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS12980 -2.0 -10.6 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS16080 -2.0 -1.7 DUF1287 domain-containing protein compare
BBR_RS16240 -1.9 -4.6 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD compare
BBR_RS18375 -1.9 -9.0 ATP-dependent helicase compare
BBR_RS20420 -1.9 -7.6 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
BBR_RS13750 -1.9 -1.9 DivIVA domain-containing protein compare
BBR_RS17490 -1.9 -9.5 MoxR family ATPase compare
BBR_RS12775 -1.8 -4.7 hypothetical protein compare
BBR_RS20720 -1.8 -5.2 DUF4422 domain-containing protein compare
BBR_RS13070 -1.8 -1.4 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS13450 -1.8 -2.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS17515 -1.8 -6.5 hypothetical protein compare
BBR_RS20775 -1.8 -1.5 DUF4230 domain-containing protein compare
BBR_RS19350 -1.8 -2.3 tRNA-Val compare
BBR_RS12365 -1.8 -6.0 DUF177 domain-containing protein compare
BBR_RS18550 -1.8 -7.6 universal stress protein compare
BBR_RS13820 -1.8 -0.8 ATP-binding protein compare
BBR_RS13455 -1.8 -3.7 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS18215 -1.8 -5.6 AI-2E family transporter compare
BBR_RS17865 -1.8 -3.7 MarR family transcriptional regulator compare
BBR_RS12665 -1.8 -10.2 acyltransferase compare
BBR_RS18050 -1.8 -2.2 threonylcarbamoyl-AMP synthase compare
BBR_RS12310 -1.7 -1.1 signal recognition particle protein compare
BBR_RS14670 -1.7 -7.2 excinuclease ABC subunit UvrA compare
BBR_RS15305 -1.7 -4.3 hypothetical protein compare
BBR_RS20885 -1.7 -0.6 hypothetical protein compare
BBR_RS19375 -1.7 -1.2 acyl-CoA carboxylase subunit beta compare
BBR_RS16070 -1.7 -3.3 hypothetical protein compare
BBR_RS20795 -1.7 -1.2 cystathionine gamma-lyase compare
BBR_RS12755 -1.7 -10.9 DUF4365 domain-containing protein compare
BBR_RS11675 -1.7 -1.2 hypothetical protein compare
BBR_RS11715 -1.7 -10.1 N-acetyltransferase compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in nutrient dropout control experiments