Experiment set2IT048 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Vancomycin Hydrochloride Hydrate 0.12 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3264 -6.1 -4.2 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_2129 -4.8 -6.4 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_2753 -4.3 -5.1 HtrA protease/chaperone protein compare
Pf6N2E2_4187 -4.3 -4.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4072 -3.6 -6.4 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_2605 -3.6 -7.4 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_4352 -3.6 -3.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4075 -3.6 -7.1 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_3261 -3.5 -4.2 hypothetical protein compare
Pf6N2E2_624 -3.5 -7.4 hypothetical protein PA3071 compare
Pf6N2E2_5430 -3.3 -11.5 Transglycosylase, Slt family compare
Pf6N2E2_4454 -2.9 -7.9 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_75 -2.9 -3.5 Colicin V production protein compare
Pf6N2E2_4417 -2.8 -7.3 Protein of unknown function DUF484 compare
Pf6N2E2_622 -2.8 -6.1 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_5733 -2.7 -5.2 NLP/P60 family protein compare
Pf6N2E2_2217 -2.6 -7.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4153 -2.6 -1.7 Sensory box histidine kinase compare
Pf6N2E2_5508 -2.6 -3.2 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_3666 -2.5 -6.4 InaA protein compare
Pf6N2E2_4369 -2.5 -3.3 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2967 -2.5 -2.8 Cold shock protein CspA compare
Pf6N2E2_3753 -2.5 -15.2 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_3039 -2.4 -8.3 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_5252 -2.4 -3.3 FIG00956396: hypothetical protein compare
Pf6N2E2_3460 -2.3 -2.4 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_623 -2.2 -1.6 FIG00954674: hypothetical protein compare
Pf6N2E2_3060 -2.2 -3.3 Outer membrane protein H precursor compare
Pf6N2E2_4353 -2.2 -5.7 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_625 -2.2 -6.4 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_2447 -2.1 -6.8 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_4584 -2.0 -3.2 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_620 -2.0 -7.8 BatD compare
Pf6N2E2_621 -2.0 -6.9 TPR domain protein in aerotolerance operon compare
Pf6N2E2_2646 -1.9 -2.1 FIG00953416: hypothetical protein compare
Pf6N2E2_4206 -1.9 -2.4 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_4797 -1.8 -1.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_2218 -1.8 -5.1 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_4585 -1.8 -10.7 Cell division protein FtsX compare
Pf6N2E2_4074 -1.8 -10.5 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_3515 -1.8 -7.7 Probable transmembrane protein compare
Pf6N2E2_4351 -1.8 -10.2 Predicted signal transduction protein compare
Pf6N2E2_2940 -1.8 -7.7 OmpA family protein compare
Pf6N2E2_5340 -1.7 -4.3 Stringent starvation protein A compare
Pf6N2E2_2824 -1.7 -9.7 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_4204 -1.7 -2.4 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_2277 -1.6 -2.1 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_2825 -1.6 -4.5 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_4416 -1.6 -3.3 Tyrosine recombinase XerC compare
Pf6N2E2_3373 -1.6 -2.9 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_3351 -1.6 -4.7 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_144 -1.5 -12.3 Uncharacterized protein YtfM precursor compare
Pf6N2E2_3516 -1.5 -2.0 Probable transmembrane protein compare
Pf6N2E2_586 -1.5 -7.1 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) compare
Pf6N2E2_3656 -1.5 -5.8 Probable transcription regulator Mig-14 compare
Pf6N2E2_145 -1.5 -6.6 putative exported protein compare
Pf6N2E2_4162 -1.5 -2.8 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_3841 -1.5 -5.9 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_2282 -1.4 -3.8 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_2074 -1.4 -2.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_5006 -1.4 -6.0 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3624 -1.4 -6.8 Flagellar motor rotation protein MotB compare
Pf6N2E2_3667 -1.4 -2.0 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_4273 -1.4 -6.4 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_3568 -1.3 -2.2 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_5727 -1.3 -5.7 FIG00955360: hypothetical protein compare
Pf6N2E2_2823 -1.3 -4.5 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_5428 -1.3 -6.1 DNA recombination and repair protein RecO compare
Pf6N2E2_4205 -1.3 -3.9 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_2013 -1.3 -1.5 hypothetical protein compare
Pf6N2E2_4372 -1.3 -5.7 FIG00460773: hypothetical protein compare
Pf6N2E2_4197 -1.3 -7.6 DNA recombination and repair protein RecF compare
Pf6N2E2_968 -1.3 -4.0 FIG00962395: hypothetical protein compare
Pf6N2E2_5337 -1.3 -3.8 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_405 -1.2 -2.0 hypothetical protein compare
Pf6N2E2_1238 -1.2 -3.5 hypothetical protein compare
Pf6N2E2_3625 -1.2 -7.9 Flagellar motor rotation protein MotA compare
Pf6N2E2_2010 -1.2 -1.8 hypothetical protein compare
Pf6N2E2_2606 -1.2 -3.8 hypothetical protein compare
Pf6N2E2_3876 -1.2 -4.4 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_3908 -1.2 -5.9 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_2992 -1.2 -3.6 Regulatory protein RecX compare
Pf6N2E2_5771 -1.2 -5.4 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_5345 -1.2 -6.1 LppC putative lipoprotein compare
Pf6N2E2_4886 -1.1 -8.2 Catalase (EC 1.11.1.6) compare
Pf6N2E2_156 -1.1 -1.2 Carbon storage regulator compare
Pf6N2E2_3461 -1.1 -1.5 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_4611 -1.1 -3.0 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4414 -1.1 -3.4 FIG00953808: hypothetical protein compare
Pf6N2E2_1806 -1.1 -2.4 hypothetical protein compare
Pf6N2E2_2510 -1.1 -3.8 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_1660 -1.0 -3.1 RND efflux system, membrane fusion protein CmeA compare
Pf6N2E2_5534 -1.0 -3.5 FIG000859: hypothetical protein YebC compare
Pf6N2E2_4773 -1.0 -1.2 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_3842 -1.0 -3.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_5338 -1.0 -6.0 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_3282 -1.0 -1.9 FIG005080: Possible exported protein compare
Pf6N2E2_1215 -1.0 -2.4 probable membrane protein YPO2362 compare
Pf6N2E2_5178 -1.0 -1.6 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2325 -1.0 -4.8 Recombination protein RecR compare
Pf6N2E2_4974 -1.0 -5.1 DedA protein compare
Pf6N2E2_2625 -1.0 -3.7 Flagellar P-ring protein FlgI compare
Pf6N2E2_4169 -1.0 -3.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2582 -1.0 -2.7 Flagellar motor switch protein FliN compare
Pf6N2E2_3655 -1.0 -6.8 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_3786 -1.0 -3.1 Twin-arginine translocation protein TatC compare
Pf6N2E2_5331 -1.0 -3.8 ATPase, AFG1 family compare
Pf6N2E2_5768 -1.0 -2.5 DNA recombination-dependent growth factor C compare
Pf6N2E2_5544 -1.0 -5.1 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_4360 -1.0 -6.5 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf6N2E2_5728 -1.0 -2.8 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_1694 -1.0 -1.1 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_3839 -0.9 -3.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3524 -0.9 -3.4 hypothetical protein compare
Pf6N2E2_2278 -0.9 -7.2 Transcription-repair coupling factor compare
Pf6N2E2_309 -0.9 -1.8 FIG00957702: hypothetical protein compare
Pf6N2E2_595 -0.9 -1.7 Arsenical resistance operon repressor compare
Pf6N2E2_3534 -0.9 -2.6 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_4843 -0.9 -4.2 FIG00956941: hypothetical protein compare
Pf6N2E2_127 -0.9 -1.1 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_2592 -0.9 -3.8 Flagellar motor switch protein FliG compare
Pf6N2E2_4764 -0.9 -3.9 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_1315 -0.9 -1.4 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_2480 -0.9 -1.6 FIG00957636: hypothetical protein compare
Pf6N2E2_2597 -0.9 -4.6 Flagellar regulatory protein FleQ compare
Pf6N2E2_2627 -0.9 -3.8 Flagellar basal-body rod protein FlgG compare
Pf6N2E2_3130 -0.9 -3.1 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf6N2E2_3761 -0.9 -7.4 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_1812 -0.9 -3.0 peptide ABC transporter, ATP-binding protein compare
Pf6N2E2_1625 -0.8 -2.7 Ferric reductase (1.6.99.14) compare
Pf6N2E2_2513 -0.8 -2.4 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_5536 -0.8 -0.9 Holliday junction DNA helicase RuvA compare
Pf6N2E2_3947 -0.8 -1.4 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf6N2E2_5111 -0.8 -2.7 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_2869 -0.8 -1.5 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_3040 -0.8 -3.2 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_4601 -0.8 -2.1 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_3504 -0.8 -5.8 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_4618 -0.8 -3.7 Chemotaxis signal transduction protein compare
Pf6N2E2_2180 -0.8 -2.0 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_4888 -0.8 -6.8 Excinuclease ABC subunit A compare
Pf6N2E2_282 -0.8 -1.0 GNAT family acetyltransferase YjcF compare
Pf6N2E2_417 -0.8 -2.6 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_1545 -0.8 -2.4 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_43 -0.8 -3.3 Histidine permease YuiF compare
Pf6N2E2_3514 -0.8 -2.8 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_4362 -0.8 -2.2 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_3980 -0.8 -4.8 Type I secretion system, outer membrane component LapE compare
Pf6N2E2_2219 -0.8 -1.4 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_2941 -0.8 -2.8 Esterase A compare
Pf6N2E2_1140 -0.8 -2.2 Polymyxin resistance protein ArnC, glycosyl transferase (EC 2.4.-.-) compare
Pf6N2E2_89 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_1667 -0.8 -1.4 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_4635 -0.8 -3.5 ATP-dependent RNA helicase RhlE compare
Pf6N2E2_5633 -0.8 -5.5 Aromatic amino acid transport protein AroP compare
Pf6N2E2_6045 -0.8 -1.2 hypothetical protein compare
Pf6N2E2_987 -0.8 -0.9 hypothetical protein compare
Pf6N2E2_2688 -0.8 -1.1 YD repeat protein compare
Pf6N2E2_4071 -0.8 -2.6 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_2591 -0.8 -3.0 Flagellar assembly protein FliH compare
Pf6N2E2_1983 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_663 -0.7 -2.7 Transcriptional activator of acetoin dehydrogenase operon AcoR compare
Pf6N2E2_1323 -0.7 -1.5 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_2488 -0.7 -1.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3978 -0.7 -5.0 Type I secretion system, membrane fusion protein LapC compare
Pf6N2E2_3906 -0.7 -4.9 Transcription accessory protein (S1 RNA-binding domain) compare
Pf6N2E2_525 -0.7 -2.6 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_1248 -0.7 -1.3 MutT/nudix family protein compare
Pf6N2E2_5049 -0.7 -0.8 acetyltransferase, GNAT family compare
Pf6N2E2_1339 -0.7 -2.1 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_2585 -0.7 -3.7 Flagellar hook-length control protein FliK compare
Pf6N2E2_2470 -0.7 -4.4 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf6N2E2_5677 -0.7 -0.9 Carbon storage regulator compare
Pf6N2E2_4077 -0.7 -1.2 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_4159 -0.7 -1.8 Cytochrome c4 compare
Pf6N2E2_5759 -0.7 -4.4 DNA recombination protein RmuC compare
Pf6N2E2_5406 -0.7 -1.7 FIG00958224: hypothetical protein compare
Pf6N2E2_1441 -0.7 -1.9 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_5993 -0.7 -1.2 FIG00957412: hypothetical protein compare
Pf6N2E2_2699 -0.7 -2.6 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO compare
Pf6N2E2_2273 -0.7 -3.7 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) compare
Pf6N2E2_3901 -0.7 -1.9 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Pf6N2E2_2152 -0.7 -1.1 hypothetical protein compare
Pf6N2E2_3134 -0.7 -0.8 hypothetical protein compare
Pf6N2E2_2912 -0.7 -1.1 FIG00954094: hypothetical protein compare
Pf6N2E2_2750 -0.7 -3.5 Putative permease PerM (= YfgO) compare
Pf6N2E2_1082 -0.7 -1.1 CopG protein compare
Pf6N2E2_5328 -0.7 -2.2 FIG00958649: hypothetical protein compare
Pf6N2E2_3981 -0.7 -5.9 T1SS secreted agglutinin RTX compare
Pf6N2E2_1821 -0.7 -1.4 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_5990 -0.7 -1.5 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_5185 -0.7 -3.9 FIG00961017: hypothetical protein compare
Pf6N2E2_5237 -0.7 -1.5 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_1692 -0.7 -1.4 transporter, LysE family compare
Pf6N2E2_3979 -0.7 -4.6 Type I secretion system ATPase, LssB family LapB compare
Pf6N2E2_1784 -0.7 -2.1 Methyl-accepting chemotaxis protein compare
Pf6N2E2_1848 -0.7 -2.6 hypothetical protein compare
Pf6N2E2_3702 -0.7 -2.3 FIG00953907: hypothetical protein compare
Pf6N2E2_3300 -0.7 -1.9 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_1470 -0.6 -2.3 Transcriptional regulator, LysR family compare


Specific Phenotypes

For 3 genes in this experiment

For stress Vancomycin Hydrochloride Hydrate in Pseudomonas fluorescens FW300-N2E2

For stress Vancomycin Hydrochloride Hydrate across organisms